Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi4g1v0011200 |
Transcript ID | LotjaGi4g1v0011200.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | O-fucosyltransferase family protein; TAIR: AT1G62330.1 O-fucosyltransferase family protein; Swiss-Prot: sp|Q8W486|Y1491_ARATH Uncharacterized protein At1g04910; TrEMBL-Plants: tr|A0A0S3R9M3|A0A0S3R9M3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0011200 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:1388886..1391830) extracted from Lotus japonicus Gifu genome v1.2.
TTGGGGGGAAGAAGTGATTCTAGGAGAAGCTACTAGAAGTAGCTGTCATGGAGGAGAAGTGATTTTTGGAGGGTTAATCG TGGGTCCGATCACAATGTGAAATGCCAAATTAACCAAGCAGCATTAAAACTTTCGAAACAGAGGTTACCTAGTGCAAGCT ACTAATTGCATCTTAGCCAAGCAGTCTGTTGGTAGTCATAAGACTCAAGTTATAGAATTTATTTTCCAATTACTTGGTAG AGTAAAGTTTTATAGGAGCAAGTTTTCAGAAACACTGACTTTTTGTATGTTATGGGACAGAATAAACGTGAACCAAAAGA TTTGTGGCAGGAACCCTTGGTTCCTGCTTCTGCTTGGAGACCTTGTGCTGATCAGCGAAATTGGGAACCTAATGGTAAGT GTGTCTGAAATTTAATTTTTGTTTATATAATGCCTCATTGATTCATAATAAAGGTGATATTCACTGTCTGCTCTCTTCCA CTGTACTCAAATAGAAGGAAATAATGGATATATTTTGGTTACCGCAAATGGCGGGATCAATCAACAACGAGTAGCTGTAA GTATTCTATATTAGGCTGCTTTATTTTATTATGATCATGCTTCTGAATTAATAGGGTTTAATTGATTTTCGAGGAGAAAA GGCCAAGCTTTATTTTAATGATTACTGTGTAATTTGTTTTAATTTTGATTCATAACAGGTTTGTAATGCTGTTGTTGTGG CCCGGTTACTCAATTCAACTTTGGTTATCCCCAAATTTATGTACAGTAGTGTATGGAGAGATGTGAGGTAATGTTCTTTC CAGCTCTCTTTCTTCTTTCGCTTCCTCCTGATCCTCACATATTTTTCTGTTTTATTTTCCTAATATCCGCTTTAGTTAAT AAAACCGATGATCTAGCTAGGACTTTGACCAATGCTCAGTTCTGACATTGATGATTAGTGGAATGTTATAATATGCATCT GGGCTTTGATTAGGATATATTAAGATTTATGAATAATTTTGGTTGATAGGTTGCACATGACTTAAGAGTTTATTTCTCAT GTATTTGTGGGGCAAAATAGCTTATTGGAATTTCTAGCTTTTTCTTTTGTCATGTATTATTTCAATGCCACATGGCCCAC ACCTGCAATCCATGGGTCTTATAATTGCTTATTGTATACTTTCATAGTCAATTCAGCGATATCTATCAGGAGGAGCATTT TATCAATTACTTGACTCCTGATATTCGGATAGTCAGGGAACTTCCCAAGAAACTACAGTCTTTGGACTTGGAGGCGATAG GCAGTGTTGTAAGTCACTTCCTGCCCATGCGAGGAAACTGATTAAACTCTACTTTATCACTTGTATTTGTTTTTAATTGT TTAGAACATGTTTCCAGGTATCAGATGTTGACATGGGGAAGGAGGCCAAGCCAAGTTTTTACGTGAAACACATCCTACCC ATTATACTTAAAAATCAAGTTATTCACTTTGTTGGATTTGGGAATCGCTTGGCATTTGATCCGATACCATTTGAGCTGCA GGTAAATGTCCTTTGATGCTTAAACATTACATTATGTTTTTCATGATTTCAAGCTCTGCAATGGTCTACTATTACCGTCT TTCTGATTTCAATCTACTATGCTCTTCCTAATTGGGAAATTCATTTAGAGACTTCGTTGCAGATGTAACTTTCAGGCCTT GCAATTCGTTCCCAGAATACAAGAAATTGGTGCTTTGCTTCTTAAAAGGTTACGGGAAGATACAGCTCATATTGGACCAT TGGATCATTATCTTGTTGGTTCATTTGCAGAATCAGTGAAGGGGAAAGGTGGAACTAATTCCAAGAAAGTATCCAAATAC CTAGCTTTACATCTCAGATTTGAAATTGACATGGTAGCTCATTCTTTATGTGAATTTGGGGGAGGTGAGGAAGAGAGGAA AGAATTGGAAGCATATCGTGAAATCCATTTTCCTGCATTGGCACTACTGAAGAAGACTACAAAGTATGCATCATAATCCT TTTATCTGAAACTGTTTCCAACTTATACTACCAGGATTGGAAAGATTCGGCGTTCATGCTTATCTTCTTTTACATACCAT GATTTTAATTTATGATGAGAAAAGCCTTACTGTTCAATTCTTTGACTTAAATTAATTGTAATCTGTGCAGATTACCTTCT CCTTCAGAGCTCAGGTCTGAAGGCCTATGTCCTTTGACACCTGAAGAAGCCATCCTCATGCTTGCTGCACTTGGTTTTAA CCGCAAGACACACATATATGTAGCTGGTTCTAATCTGTATGGAGGTCGCTCACGGTTGGTTGCTTTGACCAGCTTGTACC CTAAATTAGTCACTAAAGAGAACTTACTTTCTCCAGATGAACTCAAACCGTTTGCTAATTATTCATCTCAGGTTTGTTGC TATTGTCATTCTTGTTCCAGATGTGTTAACATCTTACAGATCTAATTGAGTCCCTTATTATGGGAAATTTTGTTTTATGC GTTACTTTTTTGTACATTGCTCCTCATACTGAATTATTCAATTTTTGGCATTAATCGGGAATGGTTACCTGCTTATCACT CAGTTTTTTTATTTTTTGCCAACAAGATAATTGAAAATGAACACTGCATTTGTTTTGGTTCTACTTTCTATTGTAGTTAG CCGCATTGGATTTCATAGGCTGCACTGCCTCGGATGCATTTGCCATGACCGATTCAGGAAGTCAGCTATCATCTTTGGTA TCCGGGTATCGAATATATTACGGTGGAGGAAGAATGCCAACAATACGTCCAAATAAACGCAGGCTTGCTGATATATTTAT GAAGAACTCATCCATAGAGTGGCGTGTTTTTGAACAGAGAGTGAGGAAAGCAGTGAGACAAACTAAACATGTGCAGACAA GGCCGAAGGCCAGAAGTATTTACAGGTACCCTAGGTGTAAAGAATGTATGTGCAGGACAGATTGA
CDS sequence (LotjaGi4g1v0011200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTATGGGACAGAATAAACGTGAACCAAAAGATTTGTGGCAGGAACCCTTGGTTCCTGCTTCTGCTTGGAGACCTTGT GCTGATCAGCGAAATTGGGAACCTAATGTCTGCTCTCTTCCACTGTACTCAAATAGAAGGAAATAATGGATATATTTTGG TTACCGCAAATGGCGGGATCAATCAACAACGAGTAGCTGTTTGTAATGCTGTTGTTGTGGCCCGGTTACTCAATTCAACT TTGGTTATCCCCAAATTTATGTACAGTAGTGTATGGAGAGATGTGAGTCAATTCAGCGATATCTATCAGGAGGAGCATTT TATCAATTACTTGACTCCTGATATTCGGATAGTCAGGGAACTTCCCAAGAAACTACAGTCTTTGGACTTGGAGGCGATAG GCAGTGTTGTATCAGATGTTGACATGGGGAAGGAGGCCAAGCCAAGTTTTTACGTGAAACACATCCTACCCATTATACTT AAAAATCAAGTTATTCACTTTGTTGGATTTGGGAATCGCTTGGCATTTGATCCGATACCATTTGAGCTGCAGAGACTTCG TTGCAGATGTAACTTTCAGGCCTTGCAATTCGTTCCCAGAATACAAGAAATTGGTGCTTTGCTTCTTAAAAGGTTACGGG AAGATACAGCTCATATTGGACCATTGGATCATTATCTTGTTGGTTCATTTGCAGAATCAGTGAAGGGGAAAGGTGGAACT AATTCCAAGAAAGTATCCAAATACCTAGCTTTACATCTCAGATTTGAAATTGACATGGTAGCTCATTCTTTATGTGAATT TGGGGGAGGTGAGGAAGAGAGGAAAGAATTGGAAGCATATCGTGAAATCCATTTTCCTGCATTGGCACTACTGAAGAAGA CTACAAAATTACCTTCTCCTTCAGAGCTCAGGTCTGAAGGCCTATGTCCTTTGACACCTGAAGAAGCCATCCTCATGCTT GCTGCACTTGGTTTTAACCGCAAGACACACATATATGTAGCTGGTTCTAATCTGTATGGAGGTCGCTCACGGTTGGTTGC TTTGACCAGCTTGTACCCTAAATTAGTCACTAAAGAGAACTTACTTTCTCCAGATGAACTCAAACCGTTTGCTAATTATT CATCTCAGTTAGCCGCATTGGATTTCATAGGCTGCACTGCCTCGGATGCATTTGCCATGACCGATTCAGGAAGTCAGCTA TCATCTTTGGTATCCGGGTATCGAATATATTACGGTGGAGGAAGAATGCCAACAATACGTCCAAATAAACGCAGGCTTGC TGATATATTTATGAAGAACTCATCCATAGAGTGGCGTGTTTTTGAACAGAGAGTGAGGAAAGCAGTGAGACAAACTAAAC ATGTGCAGACAAGGCCGAAGGCCAGAAGTATTTACAGGTACCCTAGGTGTAAAGAATGTATGTGCAGGACAGATTGA
Protein sequence (LotjaGi4g1v0011200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLWDRINVNQKICGRNPWFLLLLGDLVLISEIGNLMSALFHCTQIEGNNGYILVTANGGINQQRVAVCNAVVVARLLNST LVIPKFMYSSVWRDVSQFSDIYQEEHFINYLTPDIRIVRELPKKLQSLDLEAIGSVVSDVDMGKEAKPSFYVKHILPIIL KNQVIHFVGFGNRLAFDPIPFELQRLRCRCNFQALQFVPRIQEIGALLLKRLREDTAHIGPLDHYLVGSFAESVKGKGGT NSKKVSKYLALHLRFEIDMVAHSLCEFGGGEEERKELEAYREIHFPALALLKKTTKLPSPSELRSEGLCPLTPEEAILML AALGFNRKTHIYVAGSNLYGGRSRLVALTSLYPKLVTKENLLSPDELKPFANYSSQLAALDFIGCTASDAFAMTDSGSQL SSLVSGYRIYYGGGRMPTIRPNKRRLADIFMKNSSIEWRVFEQRVRKAVRQTKHVQTRPKARSIYRYPRCKECMCRTD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PIRSF | 30 | 478 | 449 | 5.7E-169 | ||
PANTHER | 44 | 477 | 434 | 7.5E-281 | – | |
PANTHER | 44 | 477 | 434 | 7.5E-281 | – | |
Pfam | 51 | 411 | 361 | 5.2E-72 | ||
CDD | 51 | 415 | 365 | 2.72614E-133 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0011200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…