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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0011200 |
| Transcript ID | LotjaGi4g1v0011200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | O-fucosyltransferase family protein; TAIR: AT1G62330.1 O-fucosyltransferase family protein; Swiss-Prot: sp|Q8W486|Y1491_ARATH Uncharacterized protein At1g04910; TrEMBL-Plants: tr|A0A0S3R9M3|A0A0S3R9M3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0011200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:1388886..1391830) extracted from Lotus japonicus Gifu genome v1.2.
TTGGGGGGAAGAAGTGATTCTAGGAGAAGCTACTAGAAGTAGCTGTCATGGAGGAGAAGTGATTTTTGGAGGGTTAATCG TGGGTCCGATCACAATGTGAAATGCCAAATTAACCAAGCAGCATTAAAACTTTCGAAACAGAGGTTACCTAGTGCAAGCT ACTAATTGCATCTTAGCCAAGCAGTCTGTTGGTAGTCATAAGACTCAAGTTATAGAATTTATTTTCCAATTACTTGGTAG AGTAAAGTTTTATAGGAGCAAGTTTTCAGAAACACTGACTTTTTGTATGTTATGGGACAGAATAAACGTGAACCAAAAGA TTTGTGGCAGGAACCCTTGGTTCCTGCTTCTGCTTGGAGACCTTGTGCTGATCAGCGAAATTGGGAACCTAATGGTAAGT GTGTCTGAAATTTAATTTTTGTTTATATAATGCCTCATTGATTCATAATAAAGGTGATATTCACTGTCTGCTCTCTTCCA CTGTACTCAAATAGAAGGAAATAATGGATATATTTTGGTTACCGCAAATGGCGGGATCAATCAACAACGAGTAGCTGTAA GTATTCTATATTAGGCTGCTTTATTTTATTATGATCATGCTTCTGAATTAATAGGGTTTAATTGATTTTCGAGGAGAAAA GGCCAAGCTTTATTTTAATGATTACTGTGTAATTTGTTTTAATTTTGATTCATAACAGGTTTGTAATGCTGTTGTTGTGG CCCGGTTACTCAATTCAACTTTGGTTATCCCCAAATTTATGTACAGTAGTGTATGGAGAGATGTGAGGTAATGTTCTTTC CAGCTCTCTTTCTTCTTTCGCTTCCTCCTGATCCTCACATATTTTTCTGTTTTATTTTCCTAATATCCGCTTTAGTTAAT AAAACCGATGATCTAGCTAGGACTTTGACCAATGCTCAGTTCTGACATTGATGATTAGTGGAATGTTATAATATGCATCT GGGCTTTGATTAGGATATATTAAGATTTATGAATAATTTTGGTTGATAGGTTGCACATGACTTAAGAGTTTATTTCTCAT GTATTTGTGGGGCAAAATAGCTTATTGGAATTTCTAGCTTTTTCTTTTGTCATGTATTATTTCAATGCCACATGGCCCAC ACCTGCAATCCATGGGTCTTATAATTGCTTATTGTATACTTTCATAGTCAATTCAGCGATATCTATCAGGAGGAGCATTT TATCAATTACTTGACTCCTGATATTCGGATAGTCAGGGAACTTCCCAAGAAACTACAGTCTTTGGACTTGGAGGCGATAG GCAGTGTTGTAAGTCACTTCCTGCCCATGCGAGGAAACTGATTAAACTCTACTTTATCACTTGTATTTGTTTTTAATTGT TTAGAACATGTTTCCAGGTATCAGATGTTGACATGGGGAAGGAGGCCAAGCCAAGTTTTTACGTGAAACACATCCTACCC ATTATACTTAAAAATCAAGTTATTCACTTTGTTGGATTTGGGAATCGCTTGGCATTTGATCCGATACCATTTGAGCTGCA GGTAAATGTCCTTTGATGCTTAAACATTACATTATGTTTTTCATGATTTCAAGCTCTGCAATGGTCTACTATTACCGTCT TTCTGATTTCAATCTACTATGCTCTTCCTAATTGGGAAATTCATTTAGAGACTTCGTTGCAGATGTAACTTTCAGGCCTT GCAATTCGTTCCCAGAATACAAGAAATTGGTGCTTTGCTTCTTAAAAGGTTACGGGAAGATACAGCTCATATTGGACCAT TGGATCATTATCTTGTTGGTTCATTTGCAGAATCAGTGAAGGGGAAAGGTGGAACTAATTCCAAGAAAGTATCCAAATAC CTAGCTTTACATCTCAGATTTGAAATTGACATGGTAGCTCATTCTTTATGTGAATTTGGGGGAGGTGAGGAAGAGAGGAA AGAATTGGAAGCATATCGTGAAATCCATTTTCCTGCATTGGCACTACTGAAGAAGACTACAAAGTATGCATCATAATCCT TTTATCTGAAACTGTTTCCAACTTATACTACCAGGATTGGAAAGATTCGGCGTTCATGCTTATCTTCTTTTACATACCAT GATTTTAATTTATGATGAGAAAAGCCTTACTGTTCAATTCTTTGACTTAAATTAATTGTAATCTGTGCAGATTACCTTCT CCTTCAGAGCTCAGGTCTGAAGGCCTATGTCCTTTGACACCTGAAGAAGCCATCCTCATGCTTGCTGCACTTGGTTTTAA CCGCAAGACACACATATATGTAGCTGGTTCTAATCTGTATGGAGGTCGCTCACGGTTGGTTGCTTTGACCAGCTTGTACC CTAAATTAGTCACTAAAGAGAACTTACTTTCTCCAGATGAACTCAAACCGTTTGCTAATTATTCATCTCAGGTTTGTTGC TATTGTCATTCTTGTTCCAGATGTGTTAACATCTTACAGATCTAATTGAGTCCCTTATTATGGGAAATTTTGTTTTATGC GTTACTTTTTTGTACATTGCTCCTCATACTGAATTATTCAATTTTTGGCATTAATCGGGAATGGTTACCTGCTTATCACT CAGTTTTTTTATTTTTTGCCAACAAGATAATTGAAAATGAACACTGCATTTGTTTTGGTTCTACTTTCTATTGTAGTTAG CCGCATTGGATTTCATAGGCTGCACTGCCTCGGATGCATTTGCCATGACCGATTCAGGAAGTCAGCTATCATCTTTGGTA TCCGGGTATCGAATATATTACGGTGGAGGAAGAATGCCAACAATACGTCCAAATAAACGCAGGCTTGCTGATATATTTAT GAAGAACTCATCCATAGAGTGGCGTGTTTTTGAACAGAGAGTGAGGAAAGCAGTGAGACAAACTAAACATGTGCAGACAA GGCCGAAGGCCAGAAGTATTTACAGGTACCCTAGGTGTAAAGAATGTATGTGCAGGACAGATTGA
CDS sequence (LotjaGi4g1v0011200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTATGGGACAGAATAAACGTGAACCAAAAGATTTGTGGCAGGAACCCTTGGTTCCTGCTTCTGCTTGGAGACCTTGT GCTGATCAGCGAAATTGGGAACCTAATGTCTGCTCTCTTCCACTGTACTCAAATAGAAGGAAATAATGGATATATTTTGG TTACCGCAAATGGCGGGATCAATCAACAACGAGTAGCTGTTTGTAATGCTGTTGTTGTGGCCCGGTTACTCAATTCAACT TTGGTTATCCCCAAATTTATGTACAGTAGTGTATGGAGAGATGTGAGTCAATTCAGCGATATCTATCAGGAGGAGCATTT TATCAATTACTTGACTCCTGATATTCGGATAGTCAGGGAACTTCCCAAGAAACTACAGTCTTTGGACTTGGAGGCGATAG GCAGTGTTGTATCAGATGTTGACATGGGGAAGGAGGCCAAGCCAAGTTTTTACGTGAAACACATCCTACCCATTATACTT AAAAATCAAGTTATTCACTTTGTTGGATTTGGGAATCGCTTGGCATTTGATCCGATACCATTTGAGCTGCAGAGACTTCG TTGCAGATGTAACTTTCAGGCCTTGCAATTCGTTCCCAGAATACAAGAAATTGGTGCTTTGCTTCTTAAAAGGTTACGGG AAGATACAGCTCATATTGGACCATTGGATCATTATCTTGTTGGTTCATTTGCAGAATCAGTGAAGGGGAAAGGTGGAACT AATTCCAAGAAAGTATCCAAATACCTAGCTTTACATCTCAGATTTGAAATTGACATGGTAGCTCATTCTTTATGTGAATT TGGGGGAGGTGAGGAAGAGAGGAAAGAATTGGAAGCATATCGTGAAATCCATTTTCCTGCATTGGCACTACTGAAGAAGA CTACAAAATTACCTTCTCCTTCAGAGCTCAGGTCTGAAGGCCTATGTCCTTTGACACCTGAAGAAGCCATCCTCATGCTT GCTGCACTTGGTTTTAACCGCAAGACACACATATATGTAGCTGGTTCTAATCTGTATGGAGGTCGCTCACGGTTGGTTGC TTTGACCAGCTTGTACCCTAAATTAGTCACTAAAGAGAACTTACTTTCTCCAGATGAACTCAAACCGTTTGCTAATTATT CATCTCAGTTAGCCGCATTGGATTTCATAGGCTGCACTGCCTCGGATGCATTTGCCATGACCGATTCAGGAAGTCAGCTA TCATCTTTGGTATCCGGGTATCGAATATATTACGGTGGAGGAAGAATGCCAACAATACGTCCAAATAAACGCAGGCTTGC TGATATATTTATGAAGAACTCATCCATAGAGTGGCGTGTTTTTGAACAGAGAGTGAGGAAAGCAGTGAGACAAACTAAAC ATGTGCAGACAAGGCCGAAGGCCAGAAGTATTTACAGGTACCCTAGGTGTAAAGAATGTATGTGCAGGACAGATTGA
Protein sequence (LotjaGi4g1v0011200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLWDRINVNQKICGRNPWFLLLLGDLVLISEIGNLMSALFHCTQIEGNNGYILVTANGGINQQRVAVCNAVVVARLLNST LVIPKFMYSSVWRDVSQFSDIYQEEHFINYLTPDIRIVRELPKKLQSLDLEAIGSVVSDVDMGKEAKPSFYVKHILPIIL KNQVIHFVGFGNRLAFDPIPFELQRLRCRCNFQALQFVPRIQEIGALLLKRLREDTAHIGPLDHYLVGSFAESVKGKGGT NSKKVSKYLALHLRFEIDMVAHSLCEFGGGEEERKELEAYREIHFPALALLKKTTKLPSPSELRSEGLCPLTPEEAILML AALGFNRKTHIYVAGSNLYGGRSRLVALTSLYPKLVTKENLLSPDELKPFANYSSQLAALDFIGCTASDAFAMTDSGSQL SSLVSGYRIYYGGGRMPTIRPNKRRLADIFMKNSSIEWRVFEQRVRKAVRQTKHVQTRPKARSIYRYPRCKECMCRTD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 30 | 478 | 449 | 5.7E-169 | ||
| PANTHER | 44 | 477 | 434 | 7.5E-281 | – | |
| PANTHER | 44 | 477 | 434 | 7.5E-281 | – | |
| Pfam | 51 | 411 | 361 | 5.2E-72 | ||
| CDD | 51 | 415 | 365 | 2.72614E-133 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0011200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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