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LotjaGi4g1v0016100.2

Overview

Field Value
Gene ID LotjaGi4g1v0016100
Transcript ID LotjaGi4g1v0016100.2
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Patatin; TAIR: AT1G61850.2 phospholipase A I-like protein; Swiss-Prot: sp|F4HX15|LPAI_ARATH Phospholipase A I; TrEMBL-Plants: tr|K7L3W0|K7L3W0_SOYBN Patatin; Found in the gene: LotjaGi4g1v0016100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:1981341..1987211) extracted from Lotus japonicus Gifu genome v1.2.

GTGCAGTTGGTGGAGTTATCATTGGAAAACAACAAGCTTGTTCGGCCTGTTCTTGACTTCAGGTTTTTGGATTAAATGTT TTTGTATAAATTAATTTAGACTCCATGTATTCTTGTGGCCTTATTGTTCTGGGATATGGCAGGGCTATGTCTGAACTACG TGTTCTTAGGCTATTTGGAAATCCTCTTGAGTTTCTTCCTGAAATTTTGCCCCTCCACAAACTTCGTCACCTTTCTCTTG CAAATATTAGGATTGTGGCTGATGAAAATTTGAGATCAGTGAATGTGCAAATAGAGGTAGCATTTTGCAAACTAACTAAA TTATTTTCTGATTTTACAATGTGATACATATTCAGTAAAACATACTTTTTTTCTGGTCATTGCAGATGGAGAATAGTTCT TACTTTGGTGCATCTAAGCATAAACTCAGTGCTGCCTTCTCTCTTATATTCCGTTTTTCTTCTTGTCATCACCCTTTACT AGCATCTGCTCTAGGAAAGATAATGCAAGACCAAGGAAATAGAGTATTTGTAGGTAAAGATGAGAATGCAGTGCGGCAGC TTATAAGTATGATAAGTAGTGACAACACACATGTGGTATGTTTTAATGAGCCTAACAATCACACATTTTTTTATTCTGCT GCTCTATTTGGTTGTTGTGATCATTCTTAATATTTTACAGGTTGAACAAGCCTGCTCTGCTCTTTCAGCCCTTGCTTCTG ATGATTCTGTCGCACTGCAGCTGATGAAGGCGGACATCATGCAGCCAATCGGAATAGTTCTGAAATCTGCAGGTCGGGAA GAGGTAATATCTGTATTGCAAGTTGTGGTCAAGTTGGCTTTCACATCTGATACAGTCGCTGAGAAGATGTTGACCAAGGA TATTTTGAAATCATTAAAGACTTTATGTTCCTTTAAAGATCCAGAGGCAAGTTAGTTTCTTTCATTAAATTGATACAATA GATTCCTTATATTATACTATGTTCTTTAATTTTAGGGTTTATCGTTCTACAGGTACAAAGATTAGCTCTGTTAGCTGTTG GAAATTTGGCCTTCTCTATAGAGAATCGCCGCATACTTGTTACTTCTGAAAGCTTGCGAGAACTTCTCTTACGCCTGACT GTTGCAACTGAATCACGTGTATGTAAAGCTGCAGCCCGTGCTTTGGCAATTCTTGGTTTGTCTCTAACTCTATATATAAA ATTTACCTATGACTTTCAAGATGTTTCATTATGATTAATGGCTGTCTTCACTTTTCGCTTTTGTAGGAGAAAATGAAAAC CTGAGGCGTGCAATAAGAGGAAGACAAGTGGCTAAGCAAGGACTTCGAATACTCTCAATGGATGGAGGTGGGATGAAAGG TTTAGCAACTGTACAAATGCTGAAGGAAATTGAAAAAGGAACTGGAAAACGAATACATGAGCTATTTGATTTAATATGTG GCACATCAACGGGCGGAATGCTAGCTGTTGCCCTTGGGATTAAGTTAATGACATTGGAAGAATGTGAAGATATATACAAA AATCTTGGTAAGGATGTGCTGTAAGAATTTTAGATCATCTGTTTATATGCCCGGCAATTTTAGATAAACTGATTCAAAAC ATTTTGAATCAGGTAAGCTTGTTTTCGCTGATCCTGTTCCCAAGGACAATGAAGCTGCATCATGGAGAGAAAAGTTAGAT CAACTTTATAAGAGTTCATCACAGAGCTTTAGAGTTGTTGTTCATGGATCAAAAGTATGCACTTCTTTTATGTTATTGTA TTGACTTTTTTTTTTTTATCATTTCTCTTCTTCCTGAACATTACATTCATGCATTCATATAAATACCTTAGAAGCTGTTG AGATCTGACATCAACTAGAGAAATGGCCGATGTAGACTTATAAAGGGTCGGGCAGTCATCATCTCATGAGCTAGCTTTTA GGGTTGAGTTAGACATAGTACAAATTCAAGATGGTATTAGAACCTATGGTAGATCTGATGTTGGGCAACCCACCGTAGCC AATGATCAACCTGGCCTTACACATTTCCCAGTGTAATCTACATAGTCTCATAGTTTCCCCAGTGCATTAAAAAAATCAGC TCTATGATTTAAGATGTCCAATCTTGGACCTGAAGGTGTGGTTTAAAATCCCACATCAACTAGAGATATGAACAAAGTAG ACTTTATAAAGTTTGGACAATCCTCACCCTATAAGTTAGCTTTTGGAGTTGAATTAGATTTTACCCAAATTCAAAAGAAA CTTGCGCTTTAGAAATTCTGAGTGGAAATGAAATACTTCACTTTATTGAAGTTTATGTTGTGCAATTCCTTTTATGTTTG AAGACAAGTGTGTAATGGATTCCTTTCTATGTAGCTATTCGTTATTTGGACAGCTATATATGTATCAGCTATATATTTCT ATGCCCTAAAGGGAGTATTATGACTTATTGTCTTGCAGCACAGTGCAGATCAGTTCGAGAGGCTATTAAAGGAAATGTGT AGTGATGAAGATGGGGATCTAATGATAGACTCTGCTGTGAAAAATGTGCCCAAAGTTTTTGTTGTATCAACCTTAGTGAG CATGATGCCAGCACAGCCGTTCATATTTCGTAATTATCAGGTGTGAGTCTATCTACACACACACATTTATGTACTATATA TATATATATATATATATATATATATATATATATATATCAAGAAAAAGAGGGGACTATAGTTGTAACATAATCACACATAG AAGCTAATTTCACCATCAGTTTTACCTTTTTTATTGGAAAATGTTTTTTGATCTTTTGATGTGCCCGTGTATTACACAGG CTGCACTCTATTATTTTTTTATCGGTCTTTATCATTGCTATTAATTCCACTTGCTCATGGTTGTTAATGTAGTGTTTCAT TGCAATATTTGTTTCTCTCATCTTTTCTTCCTCTTTAATTTTACATCTACAATGCAGTATCCTGCTGGAACACCAGAGGT GGCTCTTACAACATCAGATAGTTCTGGGATCACTGTATTAGCATCGCCTATTGGTGGACAAGCTGGCTATAAACGCAGTG CATTCATTGGAAGTTGTAAGCATCAAGTGTGGCAGGCTATCAGAGCGTCATCTGCTGCTCCTTATTATCTTGATGATTTC TCAGTTGGTATTGATTTTCTCTGCTATTGTTTGCATCAAGTAGCTGTATTTATCTTTTGGTTATTTCCTTTTCTTTTTTG TATTGCTTTGACATGTTTTTCTTTTTATCCTGCAATGTGCCAAAGATGTCAACCGCTGGCAAGATGGTGCGATAGTGGCA AACAATCCTACAATTTTTGCCATAAGAGAAGCACAACTTCTGTGGCCTGACACAAAAATTGACTGTCTGGTTTCAATAGG ATGCGGTTCTGTTCCAACTAGGGTAACTAATCTTCTCTATTTTAGTTTTACAATTGATGAGTAATTTTGATTTTGGAGAC TTGTCGCTGACTATTGAAATTTTAGAGTTACGTATTTTGTTTTTGTGCATTCATACTGTTGTAGATGCGAAAAGGGGGTT GGAGGTATCTGGATACAGGGCAGGTGTTGATTGAGAGTGCATGCTCTGTTGATCGCGTGGAGGAAGCTTTAAGTACATTG TTACCTATGCTTCCTGAAATACAATATTTTCGTTTCAATCCAGGTATTACTTGTGTATTGGAGTGTAAGGATGGAAGAAT CTTCTTTTGCATTCTTACAAATCTATTAGAACCAATTTTCAGTGATTTCCTATTCTTTTTCAATGTTAAATTAGTTTCTT TTCCTTGTCTAATGGGACAAGTGTCCTTGCACCGTAGCTATTGTGGGGGAAGAACTTTAATTCTCAGCAAGTGTTCTCTG TGTTTGGCCTTACAGTTGATGAACGTTGTGATATGGAACTTGATGAGACAGATCCAACAAACTGGCTAAAGTTGGAATCT GCAATTGAAGAATATATGCAACAGAATCATCATGCATTTGAAAATGCGTGTGAGAGATTGCTTCTTCCTTTCCAGCATGA CGAGAACCTGAGATCTAAATTACCCAAGACAAAGGAGTCAAACGAGGGTATTGTGAATTAAATGTTGTGTACACTGTTAA ATTTCACTTTCATTGATCCCTTCAAATATTGAAATCCTTTTTTACCTGTTTTTATCAGGTGCAAATGGCCCTACTTTAGG GTGGAGGCGCAATGTCCTACTTGTTGAAGCTTCACATGATCCAGATTCTGGAAGGATGATCCATCATGCCAGGGCGCTCG AGTCATTCTGTGCTCGTAATAGCATACGGTTATCCCTCATGCAAGGCTTGTCGGGGATAGTCAAGACAGTGCCATCAACA ACATTCGCGACTCCATTTGCGTCACCTTTGTTCACAGGAAGCTTCCCTTCAAGTCCACTTGTGTATAGCCCTGATATAGG TCAGAGGATTGGACGAATTGATCTGGTACCACCTTTAAGTTTAGATGGTCAGTTGGGAAAATCAGCTGCATCGCCTCCAG TATCTCCTCGAGGACTTAGGCAGCTCTCTGTGCCTGTCAAAGCATTGCATGAGAAATTGCAGAATTCACCACAAGTGGGT GTTATACATTTGTCTCTTCAAAATGACTCAGATGGCTTAATTGTTAGGTATGTTCTACCATATTTTATGAATTCATATTC AAATTCATCAGTTCTTTTTCTCCATATGGTTGGAAGCCTGATTATGCTGGCATTTCATTTAGTTGGCACAATGATGTGTT TGTGGTGGCTGAACCTGGAGAGCTTGCTGATAAATTTCTACAAAGTGTTAAATTCAGTTTGTTGTCAACAATGAGGAGAC ATCGCAGGAAGGGCGCATCTCTCTTGGCAAATATTTCTACCATTTCTGATTTAGTTGCCTTTAAACCTTATTTCCAAATT GGAGGCATTGTTCACCGTTATCTAGGACGTCAAACCCTAGTATATTTTCTTCCCTTTGTCCTTTTTTATAATTAGCTGAA ATCAAATTAATATATCTATTAGAAACTTGAGTTTGGATATCTTTTATGCAGGTTATGGAAGATGATCATGAAATTTGTTC ATACATGTTCCGTAGGACTGTTCCCTCTATGCATTTATCACATGATGATGTAAGATGGATGGTATGTGCTTTGTCCCTCT TGATGTCAATTTTGTCGAGCTGCACTCAAACTACTAAGGACTTGTTGACTACAACCCAATGTTCACTTTCATCATCTGAT TAGGAAATTCAGATATAGAATAATGATTGGATTTTTAGCACTTGACTATATGAGTCATTTTTATACTCTCCAATACAAAC GCATTTTCCCTGGGGTAGGAGGTATAGGGAAGAGAAACTGCAGACTATTTGAAGCTCACATCCTCTATATAATATACATA TATACGTGGATATGTTCTGACTCATTTCTGTTTTCTCTTTTTGTTGTTATATTGGATAACCTAGGTTGGAGCTTGGAGAG ACAGGATCATAATATGCACAGGGACATATGGACCTACTCCTTCTCTTATTAAGGCCTTGCTGGATTCAGGTGCCAAAGCT GTCGTATGTTCTTCAAATGAACCACCAGAATCTCAGTTGACGACGTCCTTCGATGGTTCCAGAGAGATGAATGCGATGGA AAATGGGAAGTTTGAAATCGGAGAGGACGATGCAGACGATGAGAACGTACCTGCCAGTCCAGTTAGTGACTGGGAAGATA GTGACGGTGAGAAAATTTTGGACCGCAGTTTTTCTTTTTGGGACGATGATGAAGAGGAACTGTCACAATTTGTTTGTCAG ATATACGAATCATTATTCAGGGAGGGTGCTGGTATCAATGTTGCCTTGCAACATGCCCTTGCCTCATATCGAAAAATGGG GTATGTGTGCCATCTCCCTGGCGTACAATAA
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0016100.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCTGAACTACGTGTTCTTAGGCTATTTGGAAATCCTCTTGAGTTTCTTCCTGAAATTTTGCCCCTCCACAAACTTCG TCACCTTTCTCTTGCAAATATTAGGATTGTGGCTGATGAAAATTTGAGATCAGTGAATGTGCAAATAGAGATGGAGAATA GTTCTTACTTTGGTGCATCTAAGCATAAACTCAGTGCTGCCTTCTCTCTTATATTCCGTTTTTCTTCTTGTCATCACCCT TTACTAGCATCTGCTCTAGGAAAGATAATGCAAGACCAAGGAAATAGAGTATTTGTAGGTAAAGATGAGAATGCAGTGCG GCAGCTTATAAGTATGATAAGTAGTGACAACACACATGTGGTTGAACAAGCCTGCTCTGCTCTTTCAGCCCTTGCTTCTG ATGATTCTGTCGCACTGCAGCTGATGAAGGCGGACATCATGCAGCCAATCGGAATAGTTCTGAAATCTGCAGGTCGGGAA GAGGTAATATCTGTATTGCAAGTTGTGGTCAAGTTGGCTTTCACATCTGATACAGTCGCTGAGAAGATGTTGACCAAGGA TATTTTGAAATCATTAAAGACTTTATGTTCCTTTAAAGATCCAGAGGTACAAAGATTAGCTCTGTTAGCTGTTGGAAATT TGGCCTTCTCTATAGAGAATCGCCGCATACTTGTTACTTCTGAAAGCTTGCGAGAACTTCTCTTACGCCTGACTGTTGCA ACTGAATCACGTGTATGTAAAGCTGCAGCCCGTGCTTTGGCAATTCTTGGAGAAAATGAAAACCTGAGGCGTGCAATAAG AGGAAGACAAGTGGCTAAGCAAGGACTTCGAATACTCTCAATGGATGGAGGTGGGATGAAAGGTTTAGCAACTGTACAAA TGCTGAAGGAAATTGAAAAAGGAACTGGAAAACGAATACATGAGCTATTTGATTTAATATGTGGCACATCAACGGGCGGA ATGCTAGCTGTTGCCCTTGGGATTAAGTTAATGACATTGGAAGAATGTGAAGATATATACAAAAATCTTGGTAAGCTTGT TTTCGCTGATCCTGTTCCCAAGGACAATGAAGCTGCATCATGGAGAGAAAAGTTAGATCAACTTTATAAGAGTTCATCAC AGAGCTTTAGAGTTGTTGTTCATGGATCAAAACACAGTGCAGATCAGTTCGAGAGGCTATTAAAGGAAATGTGTAGTGAT GAAGATGGGGATCTAATGATAGACTCTGCTGTGAAAAATGTGCCCAAAGTTTTTGTTGTATCAACCTTAGTGAGCATGAT GCCAGCACAGCCGTTCATATTTCGTAATTATCAGTATCCTGCTGGAACACCAGAGGTGGCTCTTACAACATCAGATAGTT CTGGGATCACTGTATTAGCATCGCCTATTGGTGGACAAGCTGGCTATAAACGCAGTGCATTCATTGGAAGTTGTAAGCAT CAAGTGTGGCAGGCTATCAGAGCGTCATCTGCTGCTCCTTATTATCTTGATGATTTCTCAGTTGATGTCAACCGCTGGCA AGATGGTGCGATAGTGGCAAACAATCCTACAATTTTTGCCATAAGAGAAGCACAACTTCTGTGGCCTGACACAAAAATTG ACTGTCTGGTTTCAATAGGATGCGGTTCTGTTCCAACTAGGATGCGAAAAGGGGGTTGGAGGTATCTGGATACAGGGCAG GTGTTGATTGAGAGTGCATGCTCTGTTGATCGCGTGGAGGAAGCTTTAAGTACATTGTTACCTATGCTTCCTGAAATACA ATATTTTCGTTTCAATCCAGTTGATGAACGTTGTGATATGGAACTTGATGAGACAGATCCAACAAACTGGCTAAAGTTGG AATCTGCAATTGAAGAATATATGCAACAGAATCATCATGCATTTGAAAATGCGTGTGAGAGATTGCTTCTTCCTTTCCAG CATGACGAGAACCTGAGATCTAAATTACCCAAGACAAAGGAGTCAAACGAGGGTGCAAATGGCCCTACTTTAGGGTGGAG GCGCAATGTCCTACTTGTTGAAGCTTCACATGATCCAGATTCTGGAAGGATGATCCATCATGCCAGGGCGCTCGAGTCAT TCTGTGCTCGTAATAGCATACGGTTATCCCTCATGCAAGGCTTGTCGGGGATAGTCAAGACAGTGCCATCAACAACATTC GCGACTCCATTTGCGTCACCTTTGTTCACAGGAAGCTTCCCTTCAAGTCCACTTGTGTATAGCCCTGATATAGGTCAGAG GATTGGACGAATTGATCTGGTACCACCTTTAAGTTTAGATGGTCAGTTGGGAAAATCAGCTGCATCGCCTCCAGTATCTC CTCGAGGACTTAGGCAGCTCTCTGTGCCTGTCAAAGCATTGCATGAGAAATTGCAGAATTCACCACAAGTGGGTGTTATA CATTTGTCTCTTCAAAATGACTCAGATGGCTTAATTGTTAGTTGGCACAATGATGTGTTTGTGGTGGCTGAACCTGGAGA GCTTGCTGATAAATTTCTACAAAGTGTTAAATTCAGTTTGTTGTCAACAATGAGGAGACATCGCAGGAAGGGCGCATCTC TCTTGGCAAATATTTCTACCATTTCTGATTTAGTTGCCTTTAAACCTTATTTCCAAATTGGAGGCATTGTTCACCGTTAT CTAGGACGTCAAACCCTAGTTATGGAAGATGATCATGAAATTTGTTCATACATGTTCCGTAGGACTGTTCCCTCTATGCA TTTATCACATGATGATGTAAGATGGATGGTTGGAGCTTGGAGAGACAGGATCATAATATGCACAGGGACATATGGACCTA CTCCTTCTCTTATTAAGGCCTTGCTGGATTCAGGTGCCAAAGCTGTCGTATGTTCTTCAAATGAACCACCAGAATCTCAG TTGACGACGTCCTTCGATGGTTCCAGAGAGATGAATGCGATGGAAAATGGGAAGTTTGAAATCGGAGAGGACGATGCAGA CGATGAGAACGTACCTGCCAGTCCAGTTAGTGACTGGGAAGATAGTGACGGTGAGAAAATTTTGGACCGCAGTTTTTCTT TTTGGGACGATGATGAAGAGGAACTGTCACAATTTGTTTGTCAGATATACGAATCATTATTCAGGGAGGGTGCTGGTATC AATGTTGCCTTGCAACATGCCCTTGCCTCATATCGAAAAATGGGGTATGTGTGCCATCTCCCTGGCGTACAATAA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0016100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSELRVLRLFGNPLEFLPEILPLHKLRHLSLANIRIVADENLRSVNVQIEMENSSYFGASKHKLSAAFSLIFRFSSCHHP LLASALGKIMQDQGNRVFVGKDENAVRQLISMISSDNTHVVEQACSALSALASDDSVALQLMKADIMQPIGIVLKSAGRE EVISVLQVVVKLAFTSDTVAEKMLTKDILKSLKTLCSFKDPEVQRLALLAVGNLAFSIENRRILVTSESLRELLLRLTVA TESRVCKAAARALAILGENENLRRAIRGRQVAKQGLRILSMDGGGMKGLATVQMLKEIEKGTGKRIHELFDLICGTSTGG MLAVALGIKLMTLEECEDIYKNLGKLVFADPVPKDNEAASWREKLDQLYKSSSQSFRVVVHGSKHSADQFERLLKEMCSD EDGDLMIDSAVKNVPKVFVVSTLVSMMPAQPFIFRNYQYPAGTPEVALTTSDSSGITVLASPIGGQAGYKRSAFIGSCKH QVWQAIRASSAAPYYLDDFSVDVNRWQDGAIVANNPTIFAIREAQLLWPDTKIDCLVSIGCGSVPTRMRKGGWRYLDTGQ VLIESACSVDRVEEALSTLLPMLPEIQYFRFNPVDERCDMELDETDPTNWLKLESAIEEYMQQNHHAFENACERLLLPFQ HDENLRSKLPKTKESNEGANGPTLGWRRNVLLVEASHDPDSGRMIHHARALESFCARNSIRLSLMQGLSGIVKTVPSTTF ATPFASPLFTGSFPSSPLVYSPDIGQRIGRIDLVPPLSLDGQLGKSAASPPVSPRGLRQLSVPVKALHEKLQNSPQVGVI HLSLQNDSDGLIVSWHNDVFVVAEPGELADKFLQSVKFSLLSTMRRHRRKGASLLANISTISDLVAFKPYFQIGGIVHRY LGRQTLVMEDDHEICSYMFRRTVPSMHLSHDDVRWMVGAWRDRIIICTGTYGPTPSLIKALLDSGAKAVVCSSNEPPESQ LTTSFDGSREMNAMENGKFEIGEDDADDENVPASPVSDWEDSDGEKILDRSFSFWDDDEEELSQFVCQIYESLFREGAGI NVALQHALASYRKMGYVCHLPGVQ
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24185
39 742 704 1.3E-223 –
Gene3D
G3DSA:1.25.10.10
75 256 182 1.4E-14
IPR011989
SUPERFAMILY
SSF48371
83 268 186 2.8E-24
IPR016024
Pfam
PF00514
93 132 40 1.5E-5
IPR000225
CDD
cd07211
269 624 356 6.85368E-150 –
SUPERFAMILY
SSF52151
274 629 356 1.31E-47
IPR016035
ProSiteProfiles
PS51635
279 521 243 38.033
IPR002641
Pfam
PF01734
279 520 242 2.1E-21
IPR002641
MobiDBLite
mobidb-lite
982 1001 20 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0006629
Biological process Lipid metabolic process The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0016100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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