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LotjaGi4g1v0017700.3

Overview

Field Value
Gene ID LotjaGi4g1v0017700
Transcript ID LotjaGi4g1v0017700.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description V-type proton ATPase subunit F; TAIR: AT4G02620.1 vacuolar ATPase subunit F family protein; Swiss-Prot: sp|Q9ZQX4|VATF_ARATH V-type proton ATPase subunit F; TrEMBL-Plants: tr|I3S5X5|I3S5X5_LOTJA V-type proton ATPase subunit F; Found in the gene: LotjaGi4g1v0017700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:2248827..2255896) extracted from Lotus japonicus Gifu genome v1.2.

ATATATAATGGCCAACAGAGTTCAAATTCCTACCAACAAATCGTCACTTATCGCCATGATTGCAGATGAGGTAAGAGCGT AGTGATGTTGTAATTGAAGTACTTACTGTTACTGACTGTAGAACAACAGATATTTGCGTGTTTCTCGTGCATTGCCCTTT AGATTTTCAACTCGCGTTTATAATGACAACATTCAAAAGGCTTATGACAACTACTTTATTTAATACAGGATACTATAGTT GGCTTTCTGCTGGCTGGTGTGGGAAATGTTGACATACGTCGGAAGACGAATTACCTTATTGTGGATTCAAGTATGTCATT GAACTATATTTCACTTACTTTTTTCTGCGCGTGGTTTGTATTAAACTATACAATGTTTTTATTTATTCTTAAATTGTGTA TATTGTTGGAAACCCAACAATCTGGATTCAACAATGAACAGAAAGAACTCAAAATAACCAAGAAATGCAGTTGATTGTTT ATTGAAAGTAAATGGAAAAATACAGAGAGGGAGTAGTAATCCCAGATTCTGACCAGAGCTCAGCTCCTATAGGAAGCTCA TTGCTTCCTATTCATTCTAATTCCTCGAATGATCAAAAGATACCCTCAACCTCTCACTCTATTCCTTAATATCTAGACGG TTACAACCAACTCTACTGTGGGGTCCTTAATTCTGATTGACCTTCCTACCCTTTCTGGAATATACCTTCCACACCTTAGG CCCAGCTGAACCATGTAGTGCTAATGGGCCTTCCACTGGATCGCAGGTCCTAACAACACCCCCTCCTAAAACAGCAACCT TGTCCTCAAGGTTGAATGCAGGAAACTGACTGCTGATTGTGAGTGTGTCTTCCCAAGTAGCCTCTTCTTCAAGCTTTCCT TTCCAATGCACCAACACTTGGTGAACCTCAGCGCCCTGCTGTTGCACTGTACGCGTTGCCAGAATGTTGTCAGGTTCAAT CAGATCAGAACTTTCTCCTTCCAATTGCGTAGGAAGTTCTTCCTCCTCTGTGTACTCCCCTACCGCTTTCTTAAGCAAAG AGACGTGGAATACTGGATGAACTCGGGAACCTTCTGGCAATTTCAACTTGTAAGCCACTGCTCCTATGCGTTCTATCACC GGATACGGCCCATAATATCGAGCAGCCAATTTCGCGTGAACTCGAGTCACCACCGATTGTTGCCGATGGGCTCTTAACTT AACGAAGACCCACTCCCCAATGGCAAACGAGCGGTCCACACGCTTAGCATCCACCTGCGACTTCATACGAGTTTGGGCTC GCAAGAGCTGAGTTTTAAGTTGCCGGAGAGCTTCGTCTCGATCAACCAGCTCCTGTTGGACAGCGGCGACGCGCGTTTCT CCCAATCCCCATCGCGCGAGAGCGGGAGGCTTGCGGCCATAAACAACTTCAAATGGGGTGAGCTGGGTCGCGGAATGGTA CGTGGTGTTGAACCAGTACTCCGCCCAGTGTATCCACATAGCCCAGGTCTTAGGTTGATCAGCGGAAAAACACCGAAGGT AGGTTTCAAGGCAACGGTTGGTCACCTCCGTTTGCCCATTCGATTCCGGATGATACGCTGAACTGAGCTTCAGTTGTGTC CCTTGGAGCTTGAAAAGCTCTTTCCAGAAGTGACTCATAAATATGGGGTCGCGATGGCTTACGATTGTTGACGGAATTCC ATGTAAGCGTATAACTTCCTTGGTGAAAATTTCTGCAATGCTACGAGCTGTATAAGGGTGTTTCAGAGGAATGAAATGGC TGTATTTTGACAAGCGGTCGACGACGACAAGAATCGCCTCATAGCCCCTCGATTTTGGAAGTCCTGTGACAAAATCGATT GAGATGTCTTCCCAAATCCGCTCAGGAATCGGAAGAGGTTGCAGAAGGCCCCCTGGAGAAGTAGCAAGATACTTTTGTCG TTGGCAAATGTCACAACGTCGAACAAATTCCTGAATAACATTCTTCATTCCCACCCAGTACAAGTTGGCCGCTAACCTGC GATATGTTCGCAAAAAACCCGAATGCCCTCCCTGGGGAGAGTTATGGAACTCGTGGAGCATTTTTGGGATCATTTGAGAG TGCTTGGACAGGACCAAGCGGTCTTTGTAGAACAGAACACCCTGTTGGAGCCTGAACTCGGGGTGCGACATTAGGTCCTC TTGCTTCTCTTTAATTACTTGCTGTAAGTGTGGGTCAGCAAGGATCTCTTCTTGGACCTGACGTTGTTCATCCCAACTTG GGTAAGACAGCAGGGTCTGCAACTCCATTCCTTCTTGGATTCGTGAAAGAGCATCCGCTCCCCTGTTCAATTTTCCTGGC TTGTAGCGAATCTCGAAGTCATACCCAAGCAATTTAGCAGTCCAATTCTGTTGATCTCCTGTGGCCACTCGCTGCTGTAG TAGTTCCTTGAGACTCTTCTGGTCGGTAGTAACCACGAATCTCCTACCTAGAAGATAAGGCCGCCAATGTTGTATGGCCA ACGCGATTGCCATCAGCTCCTTCTCATACGCTGATTTAGCCAAATTTCTCACCCCAAGTGCCTTGCTATAATATGCTATG GGATTCTTTCCCTGCATCAGGATTGCTCCTAATCCCGTGCCCGACGCGTCGCATTCGATTAAGAATTCCTTCTCAAAGTT AGGAAGTGTCAACACCGGAGCTGTGGTGAGTTTCTCCTTAAGAGTGTCAAATGCTAGCTGTGCATCAGAGTTCCAGCAGA AGGCATCTTTCTTTGTCAGGTCAGTGAGTGGTTTTGCTACCTTTCCGTAATCCCGAATGAATTTCCGGTAATAACCGGTC AATCCCAAGAACCCTCTCACTCCTTTCACAGTTTTTGGGGTTGGCCACTCACGCACGCTCACTATTTTGCTGGGATCAAC CTCTACCCCTTGTGCTGAGATCAAATGCCCCAAGTACTCCACCTTGTCACGAGCGAATTGGCACTTCTTCTTATTTGCGG TCAGCTGATGTGTGCGCAAGGTTTCCAGCACTGTGCTCAAATGTTCCATGTGAGTAGTCCAATCCTTGCTATATACGAGT ATGTCGTCGAAGAAAACAAGGACATACTTGCGGAGCATGGGCCTGAAAACTTCGTTCATCAGACTTTGGAAAGTTGACGG GGCGTTCATCAAGCCAAATGGCATGACGAGGAATTCGTAATGCCCTTCATGAGTGCGGAAAGCGGTCTTGTGTACATCCT CTGCTTTTACTCGCACTTGGTGATATCCAGATTTTAAATCAAGCTTTGAGAAGAAGCTTGCCCCATGTAACTCGTCTAAC AATTCCTCAATAACTGGTATTGGGAATTTGTCAGGTACTGTCACCTTGTTCAAGGCCCTGTAGTCAACGCACATTCTCCA TGTTTGATCCTTCTTCTTGACAAGAATGACAGGGCTGGAATATGCACTGGTGCTGTTGCGTATGATCCCAGATTCTAACA TCTCCTTCACTTGCTTCTCGATTTCATTCTTGTGCAGGTATGGATATCGGTATGGTCGCACACTAATTGGTCCATGTCCT TCCCTGATATTGATACAATGCTCTTTCCCTCTACTGGGTGGTAAACCAACCCGTTCAGTGAATATGTCAGCGTACCGTTC CAAGACACACTTCAACTCTGTGTGTAAGGCTACTGGCAGAATTGGCTCTTCTGGTTGTTCAATTCTGCAATTCCCCACTG TCCGCAATTCCCCTTGTTCAGTTCTAGGGACTCTCCTGACAATGCTTTGAAGGGCTACTGGAGCTTCTTGCCCTGCTTCG ATTCCTAGTAGCGTGACCCACTGTGTTCCATCCCAGAACTTCATTGAGCGTTTGCTCCAATTGATTAAGGTATCTCCTAG AGTCTTCAACCACTCAATCCCCAGCACGAGATCCGGTCCTCCTAACTCGAAGAGATATGGAGTGCATTTGAGTGAGTATG ACCCGAGCTCCAACTTCACCAATTTGCTCCTGCCCTGGGTGTGTGTTCGATATCCATCCCCGAGCTTGATCGACATCTTG GGAGTGTCTTCGGTTTCCCATCCCATCCTCTGAACTAATTTTTGCTCGATGAAGTTGTGTGTGGCCCCACTGTCCACTAG TACTAGCACCGGAACCCCATGAATCTTTCCTTGGAGCTTCATGGTTTGAGGATTGGCATCGGGCTCGTGAGAGAGGTTGA ACAAGCCCATTATGCTCAGCTCTCCTTCCAGATCCCCTTCTTGTTCTTCCATCTCCATTGCCAAAAGCTTGCTATCTTCT GCATCATCGTCGCCGTCTTCAACAATAAGCACGCGGAGCTGCTTATCGGGGCACTGATGCATGGGATGGTAAGGCCCACC GCATTTGAAACATTTCCCTTTTTGCTTACGGTCCAGCAGTTCTTGGTAAGTGAGGTGAGAAAAACCACGATCCCTTGGCC CAACACGACGCGTTTCACCTTGGGCCTGCTGTTCAACCCTTGGCCCATTTTGTCCAGTTTTTGTTACTGCGGCCCCATTG TCTTTTGCCCCACGTACCCAGATCCAGTCACTCCCTCTCTGTTTACTTGACCCGTTCGCTCCGGCCTGAAAACCCGGTCC GTTCCCTCTGGATCCCCGAGAATAACCCGATCCACTATCCCCTTTCACCTCCTTCTCTACCACACGCGCAGCCATCAACA GCTTTGATCGACTCATACCCTCCATTATCGCCAAGCTTCGAACTTTTCCCCTAATTTCCTCCTTCAATCCATGAAGGAAA TACCCCTGGAATTGCTTATCAGGCAAACGAGGGATCTGGGCTGTTAAATACTCGAACTCGGTGATGTATTCATCGATCGA CCCACGCTGACGTAACTCTGTCAGCTGTTCGTACACATCGCCCTCCCCATGGCCACCGTACCGCTCCAGAAGTGCGTCAC GAAGCTTCTCCCACGACAGTGCAGCATCGGCTTCCAGTAGTGAATTGAAGAAGTGGATGGTTGGCCCCTCCATGCTCAAC TGTGATAGACTCACCTTCACCGCCGGTGATGTACCTTGCACCCGGAAATAGACCTCAGCTCGTGAGATCCAACCGGCTGG GTCCTCTCCGTTGAACATCGGCAGCTCTACCTTCTTGGCAGAGTGTCGAAATTCCAGCAATGCATCTCCCTGCAACCCAC TTGATTCTCCGGCGCTGGGTATAGCTCCCATCGGTTGTGGTGTTCCTCCGTTCCTTTGATTCACGCTCTCTTCTCCGATC TGTACTGATTTTCCCATCGATTTCTCCAGCATAGCAACCAGCGTTGCAGGTAAGTCCTTGACCGCGGTGGTCACCGCCGC GAGAGACGATCGCATCTCCGCGAGCTCACCCTCCAATGCATCGACCTTGGCCTCCATCTTCTGACCGGTGTGCTTGGTCT TCTTCGGTGGCATTCACTGATTTCGGAATGGGTATCCGGCAGGTCGGACCAGTTTGTTGGAAACCCAACAATCTGGATTC AACAATGAACAGAAAGAACTCAAAATAACCAAGAAATGCAGTTGATTGTTTATTGAAAGTAAATGGAAAAATACAGAGAG GGAGTAGTAATCCCAGATTCTGACCAGAGCTCAGCTCCTATAGGAAGCTCATTGCTTCCTATTCATTCTAATTCCTCGAA TGATCAAAAGATACCCTCAACCTCTCACTCTATTCCTTAATATCTAGACGGTTACAACCAACTCTACTGTGGGGTCCTTA ATTCTGATTGACCTTCCTACCCTTTCTGGAATATACCTTCCACACCTTAGGCCCAGCTGATCCATGTAGTGCTAATGGGC CTTCCACTGGATCGCAGGTCCTAACATATATCATGAAATGCCTTCCTACTTGTTTAACTACTGTCTAGACTGTGGTAGAT AAGATACCCAATTAAAGTATCCCTATGTTCTTTTATGTTCTTAATAAAGGCTTATTATCGTTTATTGAAGACATAATAAG AAGAGGCATGTACCTCCATCCTAAATGGGATATGTTGAAAAGTAAAGTTTTTATAAATAGTCCAAGTTCCTTATCTTAAA TATATGCTAAAGGATAGAGAATACATTTCATAGTCTAGACATTGACATTCCTAAGAAACTTTGATATCTCACTTTTGTTG TGCATATGTTATTTTGCATTACCTTCTCCCCTGTTGTTACTTGGGTTACCACAAATTTACAAGATAGCATCCTTGTTTTT CTTTTACTGTTGATAGCGTCAAGTTTTGATGATATTTTCATGCTTATTTTATTTATCAGTTTGAAATCAAATTGATTTTT CATTTTAAGTTTTTGTTTTATCTCTTGTTTTTTATTTTCAGAAACAACTGTCAAACAAATCGAGGATGCATTCAAAGAAT TCACAACAAGGGATGATATTGCAATTGTGCTGATTAGTCAATATGTAAGTCCTGTTCTGTGACTATTTAAAAATGGTTTA GGCTGTCATCTTCATATATATAATGGCCTACTTCCTAGGCCCATTTTCTAGTTCCTTTTGTTAGTTCCTACTTACACAGT TACCCTTACATATTATGGTTAGGCACATATTTTGTCTGGAAATCAAAGTTATTGTTTTTCTGAAGTCCCGGAGGAAATAT TTTCTTATCACTGCTGAAGCTTCCAAATCTTACATATGAGATTTTGAATGAAAAGATTGCTCAATGAATAATGCTAGCCA GTCTTAGAATTTTATTGGATTGCAATGGGGGCCATACCAATACCAATTCCAATACCATTCAATCATAAATCGGCCCTGCT TTTTAGATAATCATCCTGTGGGTTCAAATGTTAACAAGTCATATGGTTTCTCACATTTGGTTCAGTTGTTAGTTGAGTCT ACTGTTACACCTATGTGCTCATTCAACTTTTACTTGTGAGCTTGGGTTACGACCCTCATATCCCCCTCCCTATTCAAAGA TCTTATAGTTTCTTTCTCTGTGCAGGTTGCAAACATGGTAAGGTTTTTAGTTGATAGTTATAACAAGCCTGTTCCTGCAA TACTTGAAATCCCTTCGAAAGATCACCCATATGATCCTGCACATGATTCAGTTCTTTCACGAGTAAAGTATCTCTTTTCT GCCGAATCAGTGGCATCTGACAGACGCTAA
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0017700.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCCAACAGAGTTCAAATTCCTACCAACAAATCGTCACTTATCGCCATGATTGCAGATGAGAACAACAGATATTTGCG TGTTTCTCGTGATACTATAGTTGGCTTTCTGCTGGCTGGTGTGGGAAATGTTGACATACGTCGGAAGACGAATTACCTTA TTGTGGATTCAAAAACAACTGTCAAACAAATCGAGGATGCATTCAAAGAATTCACAACAAGGGATGATATTGCAATTGTG CTGATTAGTCAATATGTTGCAAACATGGTAAGGTTTTTAGTTGATAGTTATAACAAGCCTGTTCCTGCAATACTTGAAAT CCCTTCGAAAGATCACCCATATGATCCTGCACATGATTCAGTTCTTTCACGAGTAAAGTATCTCTTTTCTGCCGAATCAG TGGCATCTGACAGACGCTAA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0017700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MANRVQIPTNKSSLIAMIADENNRYLRVSRDTIVGFLLAGVGNVDIRRKTNYLIVDSKTTVKQIEDAFKEFTTRDDIAIV LISQYVANMVRFLVDSYNKPVPAILEIPSKDHPYDPAHDSVLSRVKYLFSAESVASDRR
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR13861:SF10
1 139 139 2.4E-74 –
PANTHER
PTHR13861
1 139 139 2.4E-74 –
PIRSF
PIRSF015945
3 132 130 4.4E-49
IPR005772
Gene3D
G3DSA:3.40.50.10580
9 131 123 4.3E-42
IPR036906
TIGRFAM
TIGR01101
11 133 123 6.9E-47
IPR005772
SUPERFAMILY
SSF159468
29 108 80 7.32E-15
IPR036906
Pfam
PF01990
30 125 96 3.0E-26
IPR008218

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0033180
Cellular component Proton-transporting V-type ATPase, V1 domain A protein complex that forms part of a proton-transporting V-type ATPase and catalyzes ATP hydrolysis. The V1 complex consists of: (1) a globular headpiece with three alternating copies of subunits A and B that form a ring, (2) a central rotational stalk composed of single copies of subunits D and F, and (3) a peripheral stalk made of subunits C, E, G and H. Subunits A and B mediate the hydrolysis of ATP at three reaction sites associated with subunit A.
Subterm of
Part of
GO:0034220
Biological process Ion transmembrane transport A process in which an ion is transported across a membrane.
Subterm of
GO:0046961
Molecular function Proton-transporting ATPase activity, rotational mechanism Enables the transfer of protons from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out), by a rotational mechanism.
Subterm of
GO:1902600
Biological process Proton transmembrane transport The directed movement of a proton across a membrane.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0017700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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