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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0019300 |
| Transcript ID | LotjaGi4g1v0019300.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Aberrant panicle organization 1 protein; TAIR: AT1G30950.1 F-box family protein; Swiss-Prot: sp|Q39090|UFO_ARATH Protein UNUSUAL FLORAL ORGANS; TrEMBL-Plants: tr|Q84UE8|Q84UE8_LOTJA Proliferating floral organs protein; Found in the gene: LotjaGi4g1v0019300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:2414459..2415808) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAAGGTTTTCACCCATCTATGACTATGGCCTCTCCTTTTCCTTACACATTCCCCATCAGTGCTGGTGGTATTGGTGT TGGTGTTGTTGGTGTTGGTAGTAGCAATCTAACCACCCCCACCCCCACTGCCACTGGAACTTACAACAACACTCCATGGA TGAACAGCAGGATATGGAGCAAGCTCCCTCAGAAGCTTCTGGACCGAGTCATTGCCTTCCTCCCTACACCGGCTTTCTTC CGAGCACGCTCCGTCTGCAAGAGATGGTACTCTCTTCTCTTCTCTAACACCTTCCTTGAATTGTACCTCCACCTCTCCCC TCGCCGCCACTGGTTCATCTTCTTCAAGCACAAAACCCGCAAAAACTACATCTACAAAAACAACAACAACAACATTATTA CCGGTTCTGCTGGCACTGCCTCCTGTGAAGGATACCTGTTTGACCCCGCTGAGATGGCGTGGTACCGCATCTCCTTTGCT ATGATCCCACCAGGATTCTCTCCAGCCTCATCCTCTGCAGGCCTTCTCTGTTGGGCCTCAGATGAGGCTGGCCCAAAAAC CATGCTTCTCTCCAACCCTATCCTGGGCTCCTTAACCCAGCTCCCTCCAACTCTAAGGCCAAGGCTCTTCCCTTCCATTG GCCTAACCATCACCCCAACCTGCATAGACGTGACTGTAGCAGGTGATGACATGATATCCCCTTATGCCGTCAAGAACCTC ACATCGGAAAGCTTCCACATCGACGGTGGAGGCTTTTACTCGATGTGGGGCACGACCTCCCCGCTTCCAAGGCTCTGCAG CCTTGAAAGCGGTAGGATGGTGTGTGCTGAGGGGAAATTCTACTGCATGAACTGCAGCCCTTTTAGTGTTTTAGCCTATG ACATTGCATCCACCACTTGGTTCAAGATTCAAGCTCCTATGAGGAGGTTTTTAAGGTCTCCTAACCTGGTTGAGTGTAGG GAGAAGCTGATGCTGGTTGCGGCGGTTGAGAAGAGCAAGCTGAATGTTCCAAGGAGTTTGAGGGTGTGGACGTTGCAGGC TTGTGGGACCATGTGGGTGGAATCTGAGAGGATGCCGCAGCAGCTTTACATTCAGTTTGCTGAGATTGAAGGTGGAAATG GGTTTGAATGTGTAGGGCATGGTGAGTTTGTGGTGATCATGATCAAAGGGACAGATAAGGCGTTGCTGTATGATTTGGTG AGGAAGAGGTGGCAGTGGATTCCGCCGTGTCCTTATGCTGGTTATGATGGGTTTGAGTTGCATGGTTTTGCTTATGAGCC TAGATTGGCTACTCCTGTTACTGCACTTCTTGATCAGTTGGCACTTCCTTTTCAGAGTTACAATGCTTAG
CDS sequence (LotjaGi4g1v0019300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGGTTTTCACCCATCTATGACTATGGCCTCTCCTTTTCCTTACACATTCCCCATCAGTCCCACTGCCACTGGAAC TTACAACAACACTCCATGGATGAACAGCAGGATATGGAGCAAGCTCCCTCAGAAGCTTCTGGACCGAGTCATTGCCTTCC TCCCTACACCGGCTTTCTTCCGAGCACGCTCCGTCTGCAAGAGATGGTACTCTCTTCTCTTCTCTAACACCTTCCTTGAA TTGTACCTCCACCTCTCCCCTCGCCGCCACTGGTTCATCTTCTTCAAGCACAAAACCCGCAAAAACTACATCTACAAAAA CAACAACAACAACATTATTACCGGTTCTGCTGGCACTGCCTCCTGTGAAGGATACCTGTTTGACCCCGCTGAGATGGCGT GGTACCGCATCTCCTTTGCTATGATCCCACCAGGATTCTCTCCAGCCTCATCCTCTGCAGGCCTTCTCTGTTGGGCCTCA GATGAGGCTGGCCCAAAAACCATGCTTCTCTCCAACCCTATCCTGGGCTCCTTAACCCAGCTCCCTCCAACTCTAAGGCC AAGGCTCTTCCCTTCCATTGGCCTAACCATCACCCCAACCTGCATAGACGTGACTGTAGCAGGTGATGACATGATATCCC CTTATGCCGTCAAGAACCTCACATCGGAAAGCTTCCACATCGACGGTGGAGGCTTTTACTCGATGTGGGGCACGACCTCC CCGCTTCCAAGGCTCTGCAGCCTTGAAAGCGGTAGGATGGTGTGTGCTGAGGGGAAATTCTACTGCATGAACTGCAGCCC TTTTAGTGTTTTAGCCTATGACATTGCATCCACCACTTGGTTCAAGATTCAAGCTCCTATGAGGAGGTTTTTAAGGTCTC CTAACCTGGTTGAGTGTAGGGAGAAGCTGATGCTGGTTGCGGCGGTTGAGAAGAGCAAGCTGAATGTTCCAAGGAGTTTG AGGGTGTGGACGTTGCAGGCTTGTGGGACCATGTGGGTGGAATCTGAGAGGATGCCGCAGCAGCTTTACATTCAGTTTGC TGAGATTGAAGGTGGAAATGGGTTTGAATGTGTAGGGCATGGTGAGTTTGTGGTGATCATGATCAAAGGGACAGATAAGG CGTTGCTGTATGATTTGGTGAGGAAGAGGTGGCAGTGGATTCCGCCGTGTCCTTATGCTGGTTATGATGGGTTTGAGTTG CATGGTTTTGCTTATGAGCCTAGATTGGCTACTCCTGTTACTGCACTTCTTGATCAGTTGGCACTTCCTTTTCAGAGTTA CAATGCTTAG
Protein sequence (LotjaGi4g1v0019300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEGFHPSMTMASPFPYTFPISPTATGTYNNTPWMNSRIWSKLPQKLLDRVIAFLPTPAFFRARSVCKRWYSLLFSNTFLE LYLHLSPRRHWFIFFKHKTRKNYIYKNNNNNIITGSAGTASCEGYLFDPAEMAWYRISFAMIPPGFSPASSSAGLLCWAS DEAGPKTMLLSNPILGSLTQLPPTLRPRLFPSIGLTITPTCIDVTVAGDDMISPYAVKNLTSESFHIDGGGFYSMWGTTS PLPRLCSLESGRMVCAEGKFYCMNCSPFSVLAYDIASTTWFKIQAPMRRFLRSPNLVECREKLMLVAAVEKSKLNVPRSL RVWTLQACGTMWVESERMPQQLYIQFAEIEGGNGFECVGHGEFVVIMIKGTDKALLYDLVRKRWQWIPPCPYAGYDGFEL HGFAYEPRLATPVTALLDQLALPFQSYNA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 28 | 409 | 382 | 3.4E-83 | – | |
| PANTHER | 28 | 409 | 382 | 3.4E-83 | – | |
| SUPERFAMILY | 32 | 112 | 81 | 4.97E-13 | ||
| Gene3D | 34 | 78 | 45 | 7.5E-8 | – | |
| ProSiteProfiles | 36 | 85 | 50 | 11.644 | ||
| Pfam | 38 | 73 | 36 | 2.6E-6 | ||
| SMART | 42 | 82 | 41 | 2.6E-6 | ||
| SUPERFAMILY | 65 | 395 | 331 | 6.28E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0019300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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