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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR011043
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 95 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 5.852s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0007409.1
n.a. PREDICTED: galactose oxidase-like [Cicer arietinum] gi|502126221|ref|XP_004499224.1| chr0 2886141 2888723 +
2 domain predictions
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Lj0g3v0071509.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] gi|356525096|ref|XP_003531163.1| chr0 26244699 26247504 -
2 domain predictions
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Lj0g3v0112629.1
n.a. PREDICTED: galactose oxidase-like [Glycine max] gi|356494873|ref|XP_003516307.1| chr0 49086701 49088720 +
2 domain predictions
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Lj0g3v0170319.1
n.a. PREDICTED: galactose oxidase-like [Cicer arietinum] gi|502126221|ref|XP_004499224.1| chr0 81532475 81535057 +
2 domain predictions
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Lj0g3v0295679.1
n.a. F-box [Medicago truncatula] gi|357483729|ref|XP_003612151.1| chr0 153629302 153630728 -
2 domain predictions
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Lj0g3v0353949.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g23880-like [Cicer arietinum] gi|502167973|ref|XP_004514290.1| chr0 186372746 186374532 -
2 domain predictions
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Lj0g3v0358109.1
n.a. PREDICTED: galactose oxidase-like [Glycine max] gi|356509640|ref|XP_003523554.1| chr0 188444569 188446221 +
2 domain predictions
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Lj1g3v1078880.1
n.a. n.a. chr1 13285953 13306158 -
2 domain predictions
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Lj1g3v1078890.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] gi|356519966|ref|XP_003528639.1| chr1 13303859 13306158 +
2 domain predictions
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Lj1g3v1134080.1
n.a. PREDICTED: galactose oxidase-like [Cicer arietinum] gi|502131344|ref|XP_004500954.1| chr1 14064664 14065137 +
2 domain predictions
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Lj1g3v1798690.1
n.a. PREDICTED: F-box only protein 13-like [Glycine max] gi|356507137|ref|XP_003522327.1| chr1 21690396 21692836 -
2 domain predictions
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Lj1g3v4274410.1
n.a. Guanylate kinase [Medicago truncatula] gi|357509727|ref|XP_003625152.1| chr1 50282041 50286108 +
2 domain predictions
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Lj1g3v4955530.1
n.a. PREDICTED: galactose oxidase-like [Glycine max] gi|356571163|ref|XP_003553749.1| chr1 60394834 60397298 -
2 domain predictions
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Lj1g3v5021230.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g61590-like [Glycine max] gi|356506030|ref|XP_003521791.1| chr1 61283212 61285468 +
2 domain predictions
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Lj2g3v0824730.1
n.a. Galactose oxidase [Medicago truncatula] gi|357520921|ref|XP_003630749.1| chr2 12931401 12932078 +
2 domain predictions
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Lj2g3v1277380.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g23880-like [Cicer arietinum] gi|502078956|ref|XP_004486107.1| chr2 20264283 20265725 +
2 domain predictions
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Lj2g3v1339010.1
n.a. PREDICTED: galactose oxidase-like [Solanum lycopersicum] gi|460387424|ref|XP_004239377.1| chr2 21098766 21101268 -
2 domain predictions
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Lj2g3v1649220.1
n.a. F-box family protein [Medicago truncatula] gi|357518861|ref|XP_003629719.1| chr2 25805011 25806159 +
2 domain predictions
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Lj2g3v1659380.1
n.a. F-box family protein [Medicago truncatula] gi|357518861|ref|XP_003629719.1| chr2 25833810 25834958 -
2 domain predictions
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Lj3g3v0787290.1
n.a. PREDICTED: nitrile-specifier protein 5-like [Cicer arietinum] gi|502088392|ref|XP_004488809.1| chr3 9384024 9386562 +
2 domain predictions
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Lj3g3v2361120.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g61590-like [Cicer arietinum] gi|502156951|ref|XP_004510707.1| chr3 29592900 29596411 +
2 domain predictions
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Lj3g3v2361130.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g61590-like [Cicer arietinum] gi|502156951|ref|XP_004510707.1| chr3 29592900 29605950 +
2 domain predictions
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Lj3g3v2362140.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g61590-like [Cicer arietinum] gi|502156951|ref|XP_004510707.1| chr3 29600431 29603423 +
2 domain predictions
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Lj3g3v2363150.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g61590-like [Glycine max] gi|356506030|ref|XP_003521791.1| chr3 29604961 29606272 +
2 domain predictions
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Lj4g3v0189930.1
n.a. proliferating floral organs protein [Lotus japonicus] gi|28624856|gb|AAN87351.1| chr4 2419469 2421514 +
2 domain predictions
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Lj4g3v1721950.1
n.a. PREDICTED: actin-fragmin kinase-like [Glycine max] gi|356513479|ref|XP_003525441.1| chr4 24780736 24784554 -
2 domain predictions
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Lj4g3v2376130.1
n.a. galactose oxidase [Trifolium repens] gi|289540889|gb|ADD09566.1| chr4 32889171 32890454 +
2 domain predictions
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Lj4g3v2563540.1
n.a. PREDICTED: F-box only protein 6-like [Glycine max] gi|356540130|ref|XP_003538543.1| chr4 34314586 34318385 +
2 domain predictions
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Lj4g3v3060330.1
n.a. n.a. chr4 40783719 40785293 +
2 domain predictions
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Lj4g3v3060340.1
n.a. Galactose oxidase [Medicago truncatula] gi|357520921|ref|XP_003630749.1| chr4 40783789 40785293 -
2 domain predictions
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Lj4g3v3113210.1
n.a. circadian clock-associated FKF1 [Glycine max] gi|351727583|ref|NP_001235886.1| chr4 41619472 41622815 -
2 domain predictions
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Lj5g3v0837710.1
n.a. F-box protein [Medicago truncatula] gi|357505603|ref|XP_003623090.1| chr5 11908964 11910383 +
2 domain predictions
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Lj5g3v0890630.1
n.a. PREDICTED: guanylate kinase-like [Glycine max] gi|356504801|ref|XP_003521183.1| chr5 13210246 13214177 -
2 domain predictions
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Lj5g3v1681440.2
n.a. PREDICTED: serine/threonine-protein phosphatase BSL1-like [Glycine max] gi|356500242|ref|XP_003518942.1| chr5 23874799 23900121 -
2 domain predictions
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Lj5g3v2166090.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] gi|356519966|ref|XP_003528639.1| chr5 30975179 30977047 +
2 domain predictions
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Lj5g3v2166110.1
n.a. galactose oxidase [Trifolium repens] gi|289540889|gb|ADD09566.1| chr5 30978659 30980467 +
2 domain predictions
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Lj5g3v2182420.1
n.a. PREDICTED: galactose oxidase-like [Glycine max] gi|356509640|ref|XP_003523554.1| chr5 31571949 31573601 +
2 domain predictions
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Lj6g3v0388010.1
n.a. PREDICTED: F-box protein At5g49610-like [Glycine max] gi|356529089|ref|XP_003533129.1| chr6 3527795 3530462 -
2 domain predictions
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Lj6g3v0388020.1
n.a. PREDICTED: F-box protein At5g49610-like [Glycine max] gi|356529089|ref|XP_003533129.1| chr6 3528673 3529893 -
2 domain predictions
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Lj6g3v0523890.1
n.a. F-box protein [Medicago truncatula] gi|357447429|ref|XP_003593990.1| chr6 5185836 5188245 +
2 domain predictions
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Lj6g3v1368660.1
n.a. clock-associated PAS protein ZEITLUPE 2 [Glycine max] gi|351727148|ref|NP_001235871.1| chr6 16175863 16181915 -
2 domain predictions
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Lj6g3v1368660.3
n.a. PREDICTED: adagio protein 1-like [Cicer arietinum] gi|502085564|ref|XP_004487946.1| chr6 16175863 16181915 -
2 domain predictions
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LotjaGi0g1v0000200.1
n.a. Guanylate kinase; TAIR: AT3G57550.1 guanylate kinase; Swiss-Prot: sp|Q9M682|GMK2_ARATH Guanylate kinase 2; TrEMBL-Plants: tr|A0A0B2P9S7|A0A0B2P9S7_GLYSO Guanylate kinase; Found in the gene: LotjaGi0g1v0000200 LjG1.1_chr0 1083521 1087800 +
2 domain predictions
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LotjaGi0g1v0000200.2
n.a. Guanylate kinase; TAIR: AT3G57550.1 guanylate kinase; Swiss-Prot: sp|Q9M682|GMK2_ARATH Guanylate kinase 2; TrEMBL-Plants: tr|A0A0B2P9S7|A0A0B2P9S7_GLYSO Guanylate kinase; Found in the gene: LotjaGi0g1v0000200 LjG1.1_chr0 1083550 1087644 +
2 domain predictions
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LotjaGi1g1v0036700.1
n.a. F-box protein; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|I3SBY9|I3SBY9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0036700 LjG1.1_chr1 5111233 5114009 -
2 domain predictions
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LotjaGi1g1v0173100.1
n.a. F-box protein interaction domain protein; TAIR: AT3G23880.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9LIR8|FBK67_ARATH F-box/kelch-repeat protein At3g23880; TrEMBL-Plants: tr|G7IKD2|G7IKD2_MEDTR F-box protein interaction domain protein; Found in the gene: LotjaGi1g1v0173100 LjG1.1_chr1 32915517 32917903 +
2 domain predictions
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LotjaGi1g1v0227700.1
n.a. Glyoxal oxidase-related protein; TAIR: AT1G14430.1 glyoxal oxidase-related protein; Swiss-Prot: sp|Q3HRQ2|GLOX_VITPS Aldehyde oxidase GLOX; TrEMBL-Plants: tr|A0A151TRE7|A0A151TRE7_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0227700 LjG1.1_chr1 52757808 52762552 +
2 domain predictions
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LotjaGi1g1v0298700.1
n.a. F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|K7KW05|K7KW05_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0298700 LjG1.1_chr1 72274705 72277772 +
2 domain predictions
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LotjaGi1g1v0373500.1
n.a. F-box family protein; TAIR: AT4G33160.2 F-box family protein; Swiss-Prot: sp|Q9SMZ3|FBX13_ARATH F-box only protein 13; TrEMBL-Plants: tr|I1JU39|I1JU39_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0373500 LjG1.1_chr1 85184043 85187053 -
2 domain predictions
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LotjaGi1g1v0373500.2
n.a. F-box family protein; TAIR: AT4G33160.2 F-box family protein; Swiss-Prot: sp|Q9SMZ3|FBX13_ARATH F-box only protein 13; TrEMBL-Plants: tr|I1JU39|I1JU39_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0373500 LjG1.1_chr1 85184582 85185814 -
2 domain predictions
 –