Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0024300 |
| Transcript ID | LotjaGi4g1v0024300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT1G29950.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9ASX9|BH144_ARATH Transcription factor bHLH144; TrEMBL-Plants: tr|T2DNS4|T2DNS4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0024300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:2967202..2971352) extracted from Lotus japonicus Gifu genome v1.2.
ACCTCATGGGGTCCAAGTCCAAGGTCCCTCTTCACGCGTGCTCTCATCCAACGGTCAACATCACACCCGCGATAGACGGA AGTGCATTTCCAAGAATAAAGCTCATCCAATCCAACGGCTCAGATCCTCCCTCCAATCTCTTCACACCTTCAAATCTTGA AAGAGAATGCTCCAAGTCTCCACACCCCCCTCTTCACCAAAAACCTCTGCATCTTCATCACAACCCTTCCCTGATTCATC TTCAACTTCAACTTCAACTTCGTTTCCCATCAAGGTTCAGGTTTCCCTCTGTTACTGTGAATTGTTTTCCCTCAATTTCT CCCATTAAATTTGTTAATTTTGCAGAATTTTTGCTCATGCAGTGATTCTAGTTTGAAGATCCATCTCTTAAAGTGTATAT TACTCTTTTTCTTATACAAAAAATACATACATATAGTGAATTTGGTTACACTGATAGCTAGGGTTTTATTTAGAAATGGG TTTGCTGATTTGGGAGTATGTTAAGTTTGATGCAAAATTTGGAACTTTACCATGTAGTTAGCTAAAAAATCTGATTTAAG TTAATGGGTATGAAATTTGAATGATGGATTCTGTGTTTGAGGTTAAATTTTGGATTTTTATGGTATAGTTCTTTGTTATG GATGATTGCTCTTGCATTTAAATAGAAGTCTTACTTTGATACTTTCAGGTTGAGTTTTGGGTTTGTTACATCTGAAATTC TGGAGTTCAGCTAAATCAAGATGCCGTGGGTTTCCTTGTTTGTGGATCATAAGAGGAATTGTGTTCGCTTGGTGGTGTTT TTTCGCGTGATTCTGTAATTGTATTAGCTCAAGTGAGTGAGTTTGTCCTGCTAATCTTCCATGATTATATAGTTATATTT ATAAAAAAATTTGTCACATTTGAAGTTCTAATGTAAATAATGTGTTTATAGCTTTTGTTTTTAATTTTTAATTCTTATTG CTTGCTTTGGAAGGCAGAAAATTGGAGTGAGTTCAATTATTTATGATTCATGGACAACATTTTATCGCTGCTAACTATGA TTTATGATTGCTGCACATATGGATCAATGAACTGAGCACAGCTGTGTTAGTTAATACTCTATGAACATTTTATAGAACCT TGTATGGCTTAGGCTACGTTTGGTAGAACATGGAAGGGGATATTTTACTCTGTGGGAATAAAGGACTTTCAAGTTTGTGT TACTCTTCTTATGCAGCATATTGCTGTGGCATTAACTCTGATGATTTTGTACCATTTCTTGCTACTGCAGGTGAAGTCCC ATTAGGTTATAAAGGGATCCTTTGATTTGTTTTCTTTTCCTTTCATTACCAAAGCTGCTGGGAGGGTTGATAATGTACTT TGCCACAACGGCGAAGAGACAACAGGCCTTGAAGGAAGTTGGGCATATTAAAATGAGTGTTGGAGTCATTGCTTATAGTC GATTGATGTTAGTTTGCCAGGTAAAAAATTTCTTCTTTCCTTTTTCTGGGCTGCAATAGAGAAGGATTTAGGATTTGAAC ATCACATGGATTTTTATGTCTTTCCTCCAATGTTGCCTAGAAGATATTTGAACTTTTATAAAATTAGCATATACCTTAAA CATTGAAGGCTGAGGTCTATTATCTTGTTATGGCTAAAAGTATTGAAGGCTGAGGTCTATTATCTTGTTATGGCTATTGG CTTTACAAAGCAACATGCTGTGAAGTATATTGACAACTTTTTGGATGTACATACTCTTTGAATAGACGGTGGTTTTCTCT GGTTATATAAATCGTGTCTCGTAATTTGATTGTATTGAACATCATTGAATTCACTAATTCTCTCCATGACTGCAAAACCA CTCTTCTTTTTTGCTGTACTATTACTAATCTTTATACCACACTACTTTCTTCTGCAGGCTGAGTATTTTCGTCAGTTGCT TAAACCTGTTACGTAGTTTAGCAGGGAGGGATTGCCTTGGACACCATCGTTTGAAGGCTGCAGAAGTTGTCATTACTTGT TAGGTGGAAATCGAGATCACCTTAGTACCTGCTGTTTAATTTTTAGGTTCCTTTAGATTCTTCCATCCAGCTTTAGTACA GGTTAATTTCCAGTTGCATAGGCCAAATCATTGCTTGCTTGTATCTTTCTGAGAGTGCACAGGTATTATAATGCCGACTC GTGAATATTTTCTCCCAGAAAAGGCGGTACTTCCTTTGGCAGGTGTTGCGATTGATACTTGCATACATGCTCCACTTGCT TCTGCCTTTGATGCAGTTTTACCTCCAGGTGTGAGGCAGATAACGCCCTCTGAAAGATTTAAATTGCAGCCTTCTGTGAT TTGCCCTAAGAATTTCGTTATCTGTGATCAAACACGTCAGCAGGGCAGGATTTTGGTCCATCCTTCGATGACCTCCAAAT TTAACAGTCATGGCTTAATGGTTCATGCTACTTGCACTCAAGATCTTGAAAAGAATAAAATTAATCAAATGGAAAGGGAA TTTTCATCTTCTTTTGAAGAGGATCCTGATGACATTGATGCATTGTTGAGCCTCGAAGTGGATGAGCTTGAAGACTCGGA TGAGGAAGAAGTTAGCACAGCAAGGACTCGTGAAATTTGTGAAAGTACATCTGATACTTGCTCTAGTTATTGCTCAAAAT CAAGGAAGAAGAGGTTGTCATCATCTTCTGTACAGAAGTCTTCTGGGACCAGGGGTTACTGCAACAGTGAAACAAACCAC ATGGAGATGAAAAATATGGTGAGGATGCTGAGAAGGATTGTGCCTGGTGGAGGTAGCCAAGTGGATGCTGTTTCTGTTCT AGATGAAGCTGTTAAATACCTCAAATCTCTCAAGGCTGAAGTGGAGCAATTCGGAGTTGGACCATGAAAATAAAAATTGG ACATTCATTTGCTGCAGCAACAGTTGGACTCGATTACCGACTATTTGTTATCCTATATGAATTAGCACCCTTTTCAGACT CGGATATGGTCCTGCCCAGATTCCCTTTTATGAGAAGAGGCCTTGCAAGTAATAAATTGCAGCTGTCATTTTACTTATTC TGGTTATGTAAAAAAAAATACCTTCATAATTGTACTGTAAGTTTGTATGCCATGTGATTCAAATCCAACTTTTGCATGGG ATTTTATGTTCGTTTGAAGTCCTTTCTTGTAATGTTGACTTAACAAGTGTTTCTAGCTAGCTGTGTTGAGCAAGGTATTT GGATATTTGATGGCAACGGTCTAAATGGATGTTAACGCGAATCTTCCCACTAATCCATAGAAGAGTCCTGCTTGGAGTGA GAACTGCTTGACGGGTGCGCAACTTACTTTTCATATTACATAGATCCTAGCCTTGAACACTGATCCCTATTGCTTGAAGT TCGGTCCCTACTGCTGAGATACGGAAACTCGTTGATGCGCTTCCTGCCTATGGAACTACGAGAATTACAGATTGACTCCT CCCGCTCAAGTGGGAGAGCCGTGTTATGGGTGACCTTATTGCACGGTTCAGAGAGCACTTGTGTATGTGATGCAAGTGAC CCATTCGGTGACTTTCGCGGTCGCCCTCACTGAACCGACTTGAATCTGAACTACGATTCAGATCGAGTCTTACCATATGG ATATTTGTTGGCACCAGTTTAAATGGATGTTAACACATATTTCAATATGTAAAGTGAATTGAACTCTTCTTTACTGATGT CAATAGTACACTGTAGTGGTAAAGTAGCGCAGAGCGGCCACCGTTCGCGATGGAAGGGGTTGTGGTAGAGCTTATCATCG TGGCTAGTCATGTTCCATCGTGGTCTGAATTGCTGCCATTGCAGTGCAATTCTATCTCTACTCTTATTAATTGAGATTCT ATCTCTACTCTTATGAAATGAGTTGAAGCACATATCCAAACACTGTTTACCAAATGGTTTTTTTTTTCTTCTAGGAAGAA CAGAGTTTTTGTTCATATTTAATGTAACAAGGTTCGAGCTATTTTCTGCTGTCCTTTATCGAACTGGACAATTGTTAGTG TGAAAGATTAGACTAGTTAGTTCATTTTCCCTTTCTATTATAGAATTAGTTAGAGTTAGTTTCAGTTTCTGTTGTCCTTT CTAATTTTAGTTACCTTTGTAATCAATCCTCACCTACTTATATATAAGTAGGATAGTACATTCTTTCAAGC
CDS sequence (LotjaGi4g1v0024300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCGACTCGTGAATATTTTCTCCCAGAAAAGGCGGTACTTCCTTTGGCAGGTGTTGCGATTGATACTTGCATACATGC TCCACTTGCTTCTGCCTTTGATGCAGTTTTACCTCCAGGTGTGAGGCAGATAACGCCCTCTGAAAGATTTAAATTGCAGC CTTCTGTGATTTGCCCTAAGAATTTCGTTATCTGTGATCAAACACGTCAGCAGGGCAGGATTTTGGTCCATCCTTCGATG ACCTCCAAATTTAACAGTCATGGCTTAATGGTTCATGCTACTTGCACTCAAGATCTTGAAAAGAATAAAATTAATCAAAT GGAAAGGGAATTTTCATCTTCTTTTGAAGAGGATCCTGATGACATTGATGCATTGTTGAGCCTCGAAGTGGATGAGCTTG AAGACTCGGATGAGGAAGAAGTTAGCACAGCAAGGACTCGTGAAATTTGTGAAAGTACATCTGATACTTGCTCTAGTTAT TGCTCAAAATCAAGGAAGAAGAGGTTGTCATCATCTTCTGTACAGAAGTCTTCTGGGACCAGGGGTTACTGCAACAGTGA AACAAACCACATGGAGATGAAAAATATGGTGAGGATGCTGAGAAGGATTGTGCCTGGTGGAGGTAGCCAAGTGGATGCTG TTTCTGTTCTAGATGAAGCTGTTAAATACCTCAAATCTCTCAAGGCTGAAGTGGAGCAATTCGGAGTTGGACCATGA
Protein sequence (LotjaGi4g1v0024300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPTREYFLPEKAVLPLAGVAIDTCIHAPLASAFDAVLPPGVRQITPSERFKLQPSVICPKNFVICDQTRQQGRILVHPSM TSKFNSHGLMVHATCTQDLEKNKINQMEREFSSSFEEDPDDIDALLSLEVDELEDSDEEEVSTARTREICESTSDTCSSY CSKSRKKRLSSSSVQKSSGTRGYCNSETNHMEMKNMVRMLRRIVPGGGSQVDAVSVLDEAVKYLKSLKAEVEQFGVGP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 237 | 237 | 2.3E-76 | – | |
| PANTHER | 1 | 237 | 237 | 2.3E-76 | ||
| CDD | 189 | 232 | 44 | 2.57352E-4 | ||
| Gene3D | 191 | 235 | 45 | 2.8E-5 | ||
| SUPERFAMILY | 192 | 234 | 43 | 3.53E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi4g1v0024300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…