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LotjaGi4g1v0069900.2

Overview

Field Value
Gene ID LotjaGi4g1v0069900
Transcript ID LotjaGi4g1v0069900.2
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; TAIR: AT3G19000.1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; Swiss-Prot: sp|Q9ZSA8|DLO1_ARATH Protein DMR6-LIKE OXYGENASE 1; TrEMBL-Plants: tr|A0A151S4U7|A0A151S4U7_CAJCA Gibberellin 20 oxidase 1; Found in the gene: LotjaGi4g1v0069900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:8838802..8840870) extracted from Lotus japonicus Gifu genome v1.2.

TGAATTAGAGTTAGCCACCTAGGGAGTGCTTCCCTTGTGTGCTTATGAATAGAGCATGAGATGCTTAAATTCAGGTAACA CAATTCGCCCAGACTCTTGCCTATGTTAGCACAAGTGTTTCTAGTGGGGCATTCACGTGAGCTTCTTTAGAGATGAAGCT ACTATTGCTTCGTTCGCTCATTAAGCCACAAAGGTATTTCTAAATCCTTGCTCTGTTTCCTTTTAAACTTTGAAACATGT ATCTTATTTGAGAGATATATATGTGATGTGATAGAAAAAAGTAGAGATAATTATGAAGAGAAAGAGAGAGTAAGTGGAAT TGAGATGAAGTACAAAGTAGAGTGTGAATGAATAAAATAAAAACTCAAGAAAAAGCCACAACTATGCTAAAACTAGTCCA GATTCAATGTATTTACTTGGACAAACAACAATTCTATGAAACCTTTCTCACTATTTCTTTATAATATCTATTTTTTTCTC AAGACAATATAATTGTTCCTCTCAAGGTTGAGGAGCAAGCAGTAACCATGGGAGAGGTTGATCCAGCTTTCATCCAAGAC CCAGAGCACAGGCCAAACCTCTCCATCGTCCAAGCCCAAGGTATTCCTGTGATTGACTTATCTCCATTAACCCACCAAAC AGCTTTAGACCCATCTTCCATTGAAGGATTAGTGAAAGAAATAGGAAGTGCATGCAAAGAATGGGGATTCTTTCAAGTAA CAAACCATGGTGTTCCCCTGAGTCTTAGGCAGAGGATAGAGGAAGCCTCAAGGAAGTTCTTCGCACAGAGTTTGGAAGGG AAGAGGAAGGTTAGCAGAAACGAGGTCAATCCAACTGGTTATTATGACACAGAGCACACCAAGAACATCAGGGACTGGAA GGAAGTGTTTGATTTTCTAGCAAAAGAACCCACTTTGGTCCCTGTCACTTCTGATGAACATGATGATGAAGTTACTCTCT GGAATAATCCATCCCCTGAATACCCTCCAAATTTCAGGTAATTCATTCTAAAATTAATTGATTGATTCATATCAAACAGT GAATAATTTCATTTGATAGCCAGGTTTTTTAGTTTTGGGGGTTCTTTTTCATCGGGTCATTTATAATATTTATTAGAAGA TTGACCTTTGTATAATGGTCTGTGTTCAAAATTTTGTCATTATGAGCAGGGTTATACTCCAAGAGTACATTCAAGAGATG GAGAATCTGGCCTTCAAGTTGATGGAGTTGATAGCTCTGAGCTTAGGCCTTGAACCAAAGAGTTTTGAACAGTTCTTCAT CAAAGATCAAACCAGCTTTATAAGACTTAACCATTACCCTCCTTGCCCTTACTCTCACCTAGCTCTTGGTGTTGGTCGAC ACAAGGATCCTAGTGCCTTGACAATTCTTGGCCAAGATGAGGTTGGAGGACTTGAAGTGAAAAGTAAAGCAGATCAACAG TGGGTTAGAGTGGAACCAACCCCAGATGCTTATATTATCAATGTTGGTGATATTACTCAGGTACCAATTCAGTACCAGCA CCATAACTGAAAAGTTTAATTCTTCCTGACTAATAGTCTAAATTTTGTTGCTTTTTGGGTTAATGAATTATTTATCCTTT GGTTAGTAAAGAGAAACTTCATCCTTGTTAACTTGATGTTGGAGTTGTTTGTGCAGGTTTGGAGCAATGATGCCTATGAG AGTGTGGAACACAGAGTGATGGTTAACTCTGAGAAAGAAAGGTATTCCATTCCTTACTTCTTCTTCCCTGCACATGACAC TGAAGTCAAGCCTCTTGAGAAGCTGATAAATGAGCAAAACCCTGCAAAATATAGGCCATACAAGTGGGGCAAGTTTCTTA TCCACAGAAAGAACAGCAATTTCGAGAAGCAAAATGTGGAGAACCTTCAAATTTATCATTATAAGCTCCCCTAAATATAA TTGTATAAGGAGTATCACTCCGCTTATGCATAATGCATTATGCATGTAAATTGGGAATAATACATTGCAGCATCCGTTAC AATGTTTCTGATATGAGGGACTACAATCGAGTTTGCTGCAAAAATTTACTTGTGATGTAAGTATCATTG
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0069900.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGAGAGGTTGATCCAGCTTTCATCCAAGACCCAGAGCACAGGCCAAACCTCTCCATCGTCCAAGCCCAAGGTATTCC TGTGATTGACTTATCTCCATTAACCCACCAAACAGCTTTAGACCCATCTTCCATTGAAGGATTAGTGAAAGAAATAGGAA GTGCATGCAAAGAATGGGGATTCTTTCAAGTAACAAACCATGGTGTTCCCCTGAGTCTTAGGCAGAGGATAGAGGAAGCC TCAAGGAAGTTCTTCGCACAGAGTTTGGAAGGGAAGAGGAAGGTTAGCAGAAACGAGGTCAATCCAACTGGTTATTATGA CACAGAGCACACCAAGAACATCAGGGACTGGAAGGAAGTGTTTGATTTTCTAGCAAAAGAACCCACTTTGGTCCCTGTCA CTTCTGATGAACATGATGATGAAGTTACTCTCTGGAATAATCCATCCCCTGAATACCCTCCAAATTTCAGGGTTATACTC CAAGAGTACATTCAAGAGATGGAGAATCTGGCCTTCAAGTTGATGGAGTTGATAGCTCTGAGCTTAGGCCTTGAACCAAA GAGTTTTGAACAGTTCTTCATCAAAGATCAAACCAGCTTTATAAGACTTAACCATTACCCTCCTTGCCCTTACTCTCACC TAGCTCTTGGTGTTGGTCGACACAAGGATCCTAGTGCCTTGACAATTCTTGGCCAAGATGAGGTTGGAGGACTTGAAGTG AAAAGTAAAGCAGATCAACAGTGGGTTAGAGTGGAACCAACCCCAGATGCTTATATTATCAATGTTGGTGATATTACTCA GGTTTGGAGCAATGATGCCTATGAGAGTGTGGAACACAGAGTGATGGTTAACTCTGAGAAAGAAAGGTATTCCATTCCTT ACTTCTTCTTCCCTGCACATGACACTGAAGTCAAGCCTCTTGAGAAGCTGATAAATGAGCAAAACCCTGCAAAATATAGG CCATACAAGTGGGGCAAGTTTCTTATCCACAGAAAGAACAGCAATTTCGAGAAGCAAAATGTGGAGAACCTTCAAATTTA TCATTATAAGCTCCCCTAA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0069900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGEVDPAFIQDPEHRPNLSIVQAQGIPVIDLSPLTHQTALDPSSIEGLVKEIGSACKEWGFFQVTNHGVPLSLRQRIEEA SRKFFAQSLEGKRKVSRNEVNPTGYYDTEHTKNIRDWKEVFDFLAKEPTLVPVTSDEHDDEVTLWNNPSPEYPPNFRVIL QEYIQEMENLAFKLMELIALSLGLEPKSFEQFFIKDQTSFIRLNHYPPCPYSHLALGVGRHKDPSALTILGQDEVGGLEV KSKADQQWVRVEPTPDAYIINVGDITQVWSNDAYESVEHRVMVNSEKERYSIPYFFFPAHDTEVKPLEKLINEQNPAKYR PYKWGKFLIHRKNSNFEKQNVENLQIYHYKLP
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:2.60.120.330
1 339 339 2.8E-105
IPR027443
SUPERFAMILY
SSF51197
3 337 335 9.61E-102 –
PANTHER
PTHR10209
8 338 331 2.9E-149 –
PANTHER
PTHR10209:SF477
8 338 331 2.9E-149 –
Pfam
PF14226
26 134 109 1.4E-28
IPR026992
PRINTS
PR00682
52 69 18 5.2E-12 –
Coils
Coil
160 180 21 - –
ProSiteProfiles
PS51471
197 298 102 13.19
IPR005123
Pfam
PF03171
199 298 100 5.8E-27
IPR005123
PRINTS
PR00682
221 242 22 5.2E-12 –
PRINTS
PR00682
286 304 19 5.2E-12 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0016491
Molecular function Oxidoreductase activity Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
Subterm of
GO:0055114
Biological process Oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0069900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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