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LotjaGi4g1v0069900.4

Overview

Field Value
Gene ID LotjaGi4g1v0069900
Transcript ID LotjaGi4g1v0069900.4
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; TAIR: AT3G19000.1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; Swiss-Prot: sp|Q9FFF6|DIOX5_ARATH Probable 2-oxoglutarate-dependent dioxygenase At5g05600; TrEMBL-Plants: tr|C6T994|C6T994_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi4g1v0069900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:8841568..8843549) extracted from Lotus japonicus Gifu genome v1.2.

AATCATACTGAAACTAGTCCAGGTTCAATGTATTTGGTTGTTACTCACAACAATCATACAAAGTTTTAGATACCATATTT CTCTCATGACCATTTTTCACTCAAGTTTTCTTATGTAATCACATGATTCACATATCATATTCATTGCATTATCTTTGCTA CCTTTATTTTTTCATTTTTATATCTTATTTGTCTACACCACTCTAGTAATCTACCACACGATTGCTTACCACCATGGGAG AGGTTGATCCAGCTTTTATCCAAGAACCAGAACACAGGCCAAACCTCTCCATCATCCAAGCTGAGGGCATTCCTGTGATC GACCTCTCTCCAATAATCAACAAAACACTTTCAGACCCGTCTGCTATAGAAGGCTTAGTGAAGAAGGTAGGGAGTGCATG CAAGGAGTGGGGTTTCTTCCAAGTCACAAACCATGGTGTTCCCCTGAGTCTGAGGCAGAGCATTGATGAAGCATCAAGGA AGTTCTTTGCACAGAGCATGGAGGAGAAGAGGAAGATTTACAGAGATGAGAGCACAATTTCTGGTTATTATGACACAGAG CACACCAAAAATGTTAGGGACTGGAAGGAAGTGTTTGATTTTGTTGCAACAGAACCCACTGTGGTCCCTCTCACTTCTGA TGAAGATGATGATCGACTCACTCAGTGGACTAATAAATCTCCTGAATACCCTCCAAATTTCAGGTATTTAAGTTGAAGAA TTTTTTTTGGGGAGAGGTCTGAGGGTTCTTTTTCTTTGGATCATTTGATATACAAAAATCATTCGTGCAGCATAGAATAG TGTCAAACACCCAACACCAATTTGTGGGGGTCAGATTTATATAAACTCTGTAATTCATCTATGGCAGGTGTAGGTGTCTG TCACTATTCCGTGGTACATGAATCAACACTATATTTATCACAAGATTTACACTTGCATAATTTTTCTTTGTTCAAAATTA TGTTATTTGAGCAGCGTTATACTCCAAGAGTACATGCAAGAGATGGAGAAACTGGCCTTTAAGTTGCTTGAGCTCATAGC TCTGAGCTTAGGCCTTGAAGCAAAGAGATTTGAACAATTTTTCACCAAAGATCAAACCAGCTTCATAAGATTAAACCACT ATCCTCCTTGTCCCTTCCCTCACCTGGCTCTCGGCGTTGGTCGACACAAAGATGCTGGTGGCTTAACCATTCTTGCACAA GATGAGGTTGGAGGACTTGAAGTTAAACGTAAAGCAGATCAACAGTGGGTGAGAGTTGAACCAACCCCAGATGCTTTTAT TATCAATGTCTGTGATAGTATTCAGGTACAAGTTTCAGTATCACTGTAAAGACTGAAAACATTTGAATTTTTTCTTAGTC TAAATTATATATAATTTGTTTCTCAGTTCAAGAGTTATTTGATCCCTTAATTGACAGATAGAGATATACTTTTTGTTGAG CATTTGAGTTTTTTGTGTGCAGGTTTGGAGCAATGATGCCTATGAGAGTGTGGAGCACAGAGTGATGGTGAATTCTGAGA AAGAAAGGTTTTCCATTCCATACTTCTTCAACCCTGCACATAACTGTGAAGTCAAGCCTTTGGATGAATTGACAAATGAG CAAAACCCTTCAAAATATAGGCCATATGAATGGGGCAAGTTTTTTGTCCACAGAATGGGGGGCAATTTGAAGAAAAAAAA TGTTGAGAACATTCAAATTTATCATTATAAGCTATAGCTTAAAGATTGTTTGATACCTGTGTAGCACTGTAGCTTGCCTT GTGCATGTAAATTGTGATTGCAGCTGATTGATTTTATCCATGACAATGTTTCAGATATCAGCAATCATACAATCGAGTTT GCTGCTAAATATTACTCGTGTGCAATTATCATCGAATAATAGAAAACTAATTTATGGTATCATTTTCTTCTTTAATAGGT TTATTAGCTTTCCTCTCTGCACTACAATTCAATTGATTGTTATTACGAGCAGATAAGAGCAC
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0069900.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGAGAGGTTGATCCAGCTTTTATCCAAGAACCAGAACACAGGCCAAACCTCTCCATCATCCAAGCTGAGGGCATTCC TGTGATCGACCTCTCTCCAATAATCAACAAAACACTTTCAGACCCGTCTGCTATAGAAGGCTTAGTGAAGAAGGTAGGGA GTGCATGCAAGGAGTGGGGTTTCTTCCAAGTCACAAACCATGGTGTTCCCCTGAGTCTGAGGCAGAGCATTGATGAAGCA TCAAGGAAGTTCTTTGCACAGAGCATGGAGGAGAAGAGGAAGATTTACAGAGATGAGAGCACAATTTCTGGTTATTATGA CACAGAGCACACCAAAAATGTTAGGGACTGGAAGGAAGTGTTTGATTTTGTTGCAACAGAACCCACTGTGGTCCCTCTCA CTTCTGATGAAGATGATGATCGACTCACTCAGTGGACTAATAAATCTCCTGAATACCCTCCAAATTTCAGCGTTATACTC CAAGAGTACATGCAAGAGATGGAGAAACTGGCCTTTAAGTTGCTTGAGCTCATAGCTCTGAGCTTAGGCCTTGAAGCAAA GAGATTTGAACAATTTTTCACCAAAGATCAAACCAGCTTCATAAGATTAAACCACTATCCTCCTTGTCCCTTCCCTCACC TGGCTCTCGGCGTTGGTCGACACAAAGATGCTGGTGGCTTAACCATTCTTGCACAAGATGAGGTTGGAGGACTTGAAGTT AAACGTAAAGCAGATCAACAGTGGGTGAGAGTTGAACCAACCCCAGATGCTTTTATTATCAATGTCTGTGATAGTATTCA GGTTTGGAGCAATGATGCCTATGAGAGTGTGGAGCACAGAGTGATGGTGAATTCTGAGAAAGAAAGGTTTTCCATTCCAT ACTTCTTCAACCCTGCACATAACTGTGAAGTCAAGCCTTTGGATGAATTGACAAATGAGCAAAACCCTTCAAAATATAGG CCATATGAATGGGGCAAGTTTTTTGTCCACAGAATGGGGGGCAATTTGAAGAAAAAAAATGTTGAGAACATTCAAATTTA TCATTATAAGCTATAG
Download CDS Sequence

Protein sequence (LotjaGi4g1v0069900.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGEVDPAFIQEPEHRPNLSIIQAEGIPVIDLSPIINKTLSDPSAIEGLVKKVGSACKEWGFFQVTNHGVPLSLRQSIDEA SRKFFAQSMEEKRKIYRDESTISGYYDTEHTKNVRDWKEVFDFVATEPTVVPLTSDEDDDRLTQWTNKSPEYPPNFSVIL QEYMQEMEKLAFKLLELIALSLGLEAKRFEQFFTKDQTSFIRLNHYPPCPFPHLALGVGRHKDAGGLTILAQDEVGGLEV KRKADQQWVRVEPTPDAFIINVCDSIQVWSNDAYESVEHRVMVNSEKERFSIPYFFNPAHNCEVKPLDELTNEQNPSKYR PYEWGKFFVHRMGGNLKKKNVENIQIYHYKL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:2.60.120.330
1 340 340 1.6E-105
IPR027443
SUPERFAMILY
SSF51197
3 338 336 3.71E-100 –
PANTHER
PTHR10209:SF477
8 338 331 1.0E-149 –
PANTHER
PTHR10209
8 338 331 1.0E-149 –
Pfam
PF14226
26 147 122 3.5E-29
IPR026992
PRINTS
PR00682
52 69 18 5.6E-12 –
ProSiteProfiles
PS51471
197 298 102 12.933
IPR005123
Pfam
PF03171
199 298 100 2.4E-26
IPR005123
PRINTS
PR00682
221 242 22 5.6E-12 –
PRINTS
PR00682
286 304 19 5.6E-12 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0016491
Molecular function Oxidoreductase activity Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
Subterm of
GO:0055114
Biological process Oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0069900.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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