Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0083300 |
| Transcript ID | LotjaGi4g1v0083300.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 60 kDa chaperonin; TAIR: AT5G18820.1 TCP-1/cpn60 chaperonin family protein; Swiss-Prot: sp|Q56XV8|CPNA2_ARATH Chaperonin 60 subunit alpha 2, chloroplastic; TrEMBL-Plants: tr|G7JJX9|G7JJX9_MEDTR TCP-1/cpn60 chaperonin family protein; Found in the gene: LotjaGi4g1v0083300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:10907434..10912836) extracted from Lotus japonicus Gifu genome v1.2.
ATGCAAACACAAGCTCATACATGTCTCTCTTCATTCTTCTTCTTCCCTCCGAATCGAAACCCTTTCACTTCATCTTCATC CTCTGTAAGTCTCTTTGCTCGCTCTGCAACACTCTCACCCTCACTTTGGTCCATGCCATATACATATATATGCTTCTTTT CTTTTCGTTTTTTCTGACTTTACGCTGTTGCAGTCTTTTCGTTGGAACCAAATGGCAATTAGGGTTCGGAAAAACCCACA CTTTGTGGTGCGCGCTGGTGCTAAGAAGATATCATTCGGTAAGGAATGCAGAGAGGCTTTGCTAGTAGGCATGGATAAAC TCGCTGATGCTGTCTCTCTTACTGTAGGACCCAAAGGTTTCAAATTTCAAAATTCTCCTCTTTTTTTTATGTCTTATATG CTACTAATGACTTAGGTTAGCAATTAAATTAAAGTGTGGTCATTTTTATTTTATTTAATTTGTTGCATTGCTTAATCACT AGAATATTTTTTTATCACTGTTATATGCATTTCTCCATTGTATTAATTTAAGTGCATGTTTGGTTTGAATTAGATTTTAG TGTCTTTACGGTTTTGATTATAAGTTGTTTTAGCTATAAATAAGCTAATCCAAACAATAACCAAGTGTGTGTTTGTTTTG ATGGACTTTCGCTTCATTCGGTTCCATAAACCATGGTTTTAAATTGCAGTCGTGGTTGTGGTTATATTCCAGAAGAGAAA TTCTAGCAACTCTCTCTTTGGCACTCTCTTTCTAACACTCTGTCCTTGCCTGGTTAAAATCCATGTAGTGTCCACTAAAT TATATGGGCTCCACTACCAATTTGGTGGGAATTGTATGAATTTTAACCAATCGAAGTAAGAGTGTTAGAATTGCAGACAA ATGCAGGTTGATGCAACCACAATTGCGGCCATGATGCACTCAAAATCCCTTTACATTGCGGACACAATTACAGTTGCGGG CTGCAATTTAAAACCCTGCTTAGGGGGTGTATTGAGATGAATGTGCTTTTACATTTTGGGTAACATCTAGTGAAACACAC CCTAAGATTCACTATTGCTTTTAATTATGTTCAAGCTGCAGATTGCTTGCACTTGAAGCTCTATATTATGTGGTACTTTG ACTGATTATGGTTCAATGTTTTTTTTACCGTTCATGCTTATTTGTTTCACTCCTAACCACACAGGCCGTAATGTTATTCT TTCTGAATCTGGGAAGCTTAAAGTAATTAATGACGGTGTTACAATTGCACGATCCATAGAGCTTGCCGACGCAATTGAGA ATGCAGGTGCCATGCTAATTCAAGAGGTTGATCATAGTTGTTAGGTTTTGCCACGGGTTAAAAGGTTGAAACTTGAGACA AAAGTTACCACAGATGTATTTAGGTTTCTATGTTTCCTGCTTGTAGGTTGCGAGTAAAATGAATGATTTGGCTGGAGATG GTACTAGCACTGCAATTATTTTGGCTCGAGCCATGATTAAATATGGGCTATTATCTGTTGCATTTGGGGCTAATCCTATT TCGTTGAGGAAAGGGATGGAAAAGACTGTAAAAGATTTGATCAAGTTCTTGAAGACGAGAAGCGTTCCTGTTGAAGGAAG GGATCACATTAAAGGTCTTTTCTTCTGCCTGTTTTTGTTTTGTTAAGGTAATATTTTTTTCACATAGGAAGTATTTGAAG CTATTTATTTCCCTGCTTTTGCAGCTGTAGCATCAATATCTGCTGGAAATGATGAGTATGTTGGCAATTTGATTGCTGAA GCTATAGAGAAGATTGGTTCTGATGGGGTGATCTCCATTGAGACATCTTCAACATCTGAAACCTCCGTCATAATTGAAAA AGGGATGAAGGTATTGATGATGATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAA TAAAATATTTCTCAATGACAGGCGTCAATTCTTCTTTGTCAGATCTGAATGATTGTTGCCCTTGTATTTTTCACTATTAT AGCTATTTGTTCTTTCTGTACAGATTGATAAGGGTTATATGTCTCCTCACTTCATCACAAACCAGGAGAAGTCCATTGTG GAGTTTGACAATGCTAAAATTTTGGTAACTGATCAAAAGATTTCAAATGTCAAAGAAATCATTCCCTTGCTGGAAAAGGC TATGCAGTTGAATGCTCCACTCGTAATTATTGCAGAGGATATCGCAAAACAAGTGTTGGAAACATTAGTAGTGAACAAAG CACAAGGGTTACTAAGAGTTGCAGTTGTAAAATGTCCAGGATTTGGAGATGCAAAGAAAGCTATATTGCAAGATATTGCG CTTATGACAGGTGAGTTCCTATGGCACTATGCTTTTCTATTTTCAAATTATTGTCATGAAGCCTACACACAAATAGTTGC TTCTTTTGCTACTATTGACTGACCAAGTATACTGACAAGAAGCTTTTCTATGACATTGCTTTTCGTTTTCATTTATCAAT TTTAGTTTGGCAGAGAGCCTGCCTTGGGTACTAAGGCAATAATACCACTTTCTTATTTAATAATTTTCTTATTTTAGTTG CTAAGATCTGCATGTTTCACCTCATGTTGACATTAACATCACAGGTGGTGATTTTCTTGCTGGAGATTTGGGTCTCACTC TTGATGGCGCCACATCAGACCAGCTTGGCAATGCACTGAAAGTAACAATAACCAGTAATGCAACAACTATAATTGCTGAT CCTAGCACTAAGGCTGAAATTCAGGCTAGAATTTTACAGATAAAAAAGGATCTTATGGGAATAGATAATGCGAACCTTTC GAAAAAGCTCTCAGAGAGAATTGCAAAACTCTCGGGTGGTATAGCTGTTATAAAGGTACCTAATTCAATGCAAGTGTCAT GGGTTGTCTGTACTCTGATCATCACTCTTTACTTTGCTACTATTTCTTACTCTTTTCTGATTTTATAAATTCTTGAGTTT TATTGAATCATACATTATTCCTATGCATTTCAACCTGCATGTAACTTGAGAAATGGATATTAGATTATTAATCTTAAACA TGGTCATCTTGGAAGTTTTAGTACCTACTAGCCCTTTATGATGTATTCCTTATATAAGTAAAATCCTGTGAAGTTTTTTC ACTTCTATGTCATACTATCACTGATGTTTTATTTATCTTTAATATTATTTCATCTGTGTGATATTTATCTTCTCCTTTAT ATATTTTCTTCTACTTTATATTTTTTTCTAAATCAAATCAAATATTACAATAGCATTTATATTTTCTATTTCTCCAAGAA CTCTAGATGTCCCACTGCCTGTCGTAATGACTCAAGTCATTCTATTTTTATCTTATTGTTTCTCTGAATTCTATGAAATT GATTCTAGATATTGCACCATGTGTACGATAGTCATAATACTTTTGTATGAAGATTTTAGAAAATAAAAAATATGAATAAA AATTGAAATTTGAAACTATGTCCTAAACCATGAAGCAAGATTTATATTTAAATGATTTATCATTCTGTATGATTTACGAT TGTGATATGACTTTAAGACGTGTCATTTGAACCATATAGCCGATCCCACCTAATAGAAAAAAGCTTTTGTTGCTGTTACT GTTGTAGTCAAAATAGAAGTTGCATTTATTTCTTTTTAGAAGGGCTTTACTCACCATTAGTTTGGGTCCTATAAAAGATG TGTTGATTGAATGCAGTATCCCTTGATCCTTGTTTAGGATATGCATGAACCAAGAAACCCATTGTGTTAATTGCATGGAT CATACTAACTTTCATTTGTTTTCGATATTCATGATGTCTTGATTGCAATTTGTTATACAGAAACAAATAGCTGTGATCTT GAATTTTGCTCAGAATATGTAACATTAGCATTATATTCTAGTGTTAACTGCTTAATGCAATAAACCATTATGTAGGTAGG TGCACACACTGAGCTGGAACTTGAAGATAGAAAACTTAGAATCGAGGATGCCAAAAATGCTACATTTGCTGCCATAAATG AAGGGATTGTTCCTGGAGGGGGGGCTACATATGTCCATCTGTTGGACTTGATACCTACAATAAGGAACTCCATGGAAGAT CGAGATGAGCAAATTGGTGCTGATATTGTGGCAAAGGTAAAATTATATATGTTAATCTACAGTATCAAAGCTTGAAGAAA ATAATTGAGGGAGCCAAAAAAATATTTTCCTCAGAATGACTCATCACGAAAAAATCACTATGGTTTGTCTTAAATCAAAG AGGCTGATGATCTGAAATTGCAATTTCTTATATATTGCATCTGAATCTGATAGTGATTGTAGAGGGATAACCCAAGCCCC ATCGGCCTTGAATGTTATTCAGTTATTGGCACTTTATCCCTTGTCAACTCACAATCAAATATTTATGTTGTGTTCAATAA TATCAATTTCATAAATTTGTCATGGCCTACGCAAAGATTGTCTTTTGTGATTGTGTTGGCATGGGATTTAATGTCAATGA CTGCCATCTCAACTTCACGTGACAACTATAACAAATGTACTTTCAGAATTAGGAAAGTAGATTATTGTAAATAGTATCCC TGATTGTTATAGTAGGTTTCAGAATTAGGGAAGTAGAAAGTCTCTTGTGATCTCCTATTTATGGATCCCTGCCATTTAGG AACACTGAAATATAAACTCAATTAGGCTGAGGAACTCTCTCAAGCAATTCTAAATGCTGTAGAATAGTGGAATCTCAAGT TGATCGTCATCAATGTCAAAAATATCTAGTTATCACTTGATTCACTTTGTGGATTGTCCAAACTTGGACATTGGAGAAAC TCCACTATCTACAGTCGTGTGAAGTTTGCATTAAGAGTTTGAGGGGTGTGTCAAGTCTCCTGTGCAAGTGTGCATTATTC TAGTGGGTTTAGGATTCACCATGTAGCATCATCCACTCCCCAAGATAATGGAATATAATTTTTTTAGCTGAGATATTAGT TCTTATTTTTAGTTTCTGGTAAAAATGATTTTTTTCTTACTATTTCCCTCACATATAGCTGGATTGAGACTAGTTCTGTG AAAGGTAATATTACTTATGAACTTGTCTTGTATGCTTTTACATATTTGTGAGAGGTTGCACTTGAATAATGGCAGGCACT CCTTGAACCTGCAAAATCAATTGCAACTAACGCTGGAGTTGATGGAGATGTTGTTGTCCAGAAGATTAGAATATTTGATT GGAGAATTGGATATAATGCAATGACTGGCACATATGAAGATCTTTTGAATGCTGGAGTAGCTGATCCTAGTCGAGTTGCA AGATGTGCTCTTCAAAGTGCGGTATCTGTTGCCGGCGTGGTTCTAACAACTCAAGCTATATTGGTGGAAAAAATAAAGAC ACCCAAGCCACCTGTGCCCATGCTCCCTGGTATAAATCTCTAA
CDS sequence (LotjaGi4g1v0083300.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATAAACTCGCTGATGCTGTCTCTCTTACTGTAGGACCCAAAGGCCGTAATGTTATTCTTTCTGAATCTGGGAAGCT TAAAGTAATTAATGACGGTGTTACAATTGCACGATCCATAGAGCTTGCCGACGCAATTGAGAATGCAGGTGCCATGCTAA TTCAAGAGGTTGCGAGTAAAATGAATGATTTGGCTGGAGATGGTACTAGCACTGCAATTATTTTGGCTCGAGCCATGATT AAATATGGGCTATTATCTGTTGCATTTGGGGCTAATCCTATTTCGTTGAGGAAAGGGATGGAAAAGACTGTAAAAGATTT GATCAAGTTCTTGAAGACGAGAAGCGTTCCTGTTGAAGGAAGGGATCACATTAAAGCTGTAGCATCAATATCTGCTGGAA ATGATGAGTATGTTGGCAATTTGATTGCTGAAGCTATAGAGAAGATTGGTTCTGATGGGGTGATCTCCATTGAGACATCT TCAACATCTGAAACCTCCGTCATAATTGAAAAAGGGATGAAGATTGATAAGGGTTATATGTCTCCTCACTTCATCACAAA CCAGGAGAAGTCCATTGTGGAGTTTGACAATGCTAAAATTTTGGTAACTGATCAAAAGATTTCAAATGTCAAAGAAATCA TTCCCTTGCTGGAAAAGGCTATGCAGTTGAATGCTCCACTCGTAATTATTGCAGAGGATATCGCAAAACAAGTGTTGGAA ACATTAGTAGTGAACAAAGCACAAGGGTTACTAAGAGTTGCAGTTGTAAAATGTCCAGGATTTGGAGATGCAAAGAAAGC TATATTGCAAGATATTGCGCTTATGACAGGTGGTGATTTTCTTGCTGGAGATTTGGGTCTCACTCTTGATGGCGCCACAT CAGACCAGCTTGGCAATGCACTGAAAGTAACAATAACCAGTAATGCAACAACTATAATTGCTGATCCTAGCACTAAGGCT GAAATTCAGGCTAGAATTTTACAGATAAAAAAGGATCTTATGGGAATAGATAATGCGAACCTTTCGAAAAAGCTCTCAGA GAGAATTGCAAAACTCTCGGGTGGTATAGCTGTTATAAAGGTAGGTGCACACACTGAGCTGGAACTTGAAGATAGAAAAC TTAGAATCGAGGATGCCAAAAATGCTACATTTGCTGCCATAAATGAAGGGATTGTTCCTGGAGGGGGGGCTACATATGTC CATCTGTTGGACTTGATACCTACAATAAGGAACTCCATGGAAGATCGAGATGAGCAAATTGGTGCTGATATTGTGGCAAA GGCACTCCTTGAACCTGCAAAATCAATTGCAACTAACGCTGGAGTTGATGGAGATGTTGTTGTCCAGAAGATTAGAATAT TTGATTGGAGAATTGGATATAATGCAATGACTGGCACATATGAAGATCTTTTGAATGCTGGAGTAGCTGATCCTAGTCGA GTTGCAAGATGTGCTCTTCAAAGTGCGGTATCTGTTGCCGGCGTGGTTCTAACAACTCAAGCTATATTGGTGGAAAAAAT AAAGACACCCAAGCCACCTGTGCCCATGCTCCCTGGTATAAATCTCTAA
Protein sequence (LotjaGi4g1v0083300.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDKLADAVSLTVGPKGRNVILSESGKLKVINDGVTIARSIELADAIENAGAMLIQEVASKMNDLAGDGTSTAIILARAMI KYGLLSVAFGANPISLRKGMEKTVKDLIKFLKTRSVPVEGRDHIKAVASISAGNDEYVGNLIAEAIEKIGSDGVISIETS STSETSVIIEKGMKIDKGYMSPHFITNQEKSIVEFDNAKILVTDQKISNVKEIIPLLEKAMQLNAPLVIIAEDIAKQVLE TLVVNKAQGLLRVAVVKCPGFGDAKKAILQDIALMTGGDFLAGDLGLTLDGATSDQLGNALKVTITSNATTIIADPSTKA EIQARILQIKKDLMGIDNANLSKKLSERIAKLSGGIAVIKVGAHTELELEDRKLRIEDAKNATFAAINEGIVPGGGATYV HLLDLIPTIRNSMEDRDEQIGADIVAKALLEPAKSIATNAGVDGDVVVQKIRIFDWRIGYNAMTGTYEDLLNAGVADPSR VARCALQSAVSVAGVVLTTQAILVEKIKTPKPPVPMLPGINL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 519 | 519 | 7.7E-293 | – | |
| Gene3D | 1 | 502 | 502 | 3.3E-186 | ||
| CDD | 1 | 505 | 505 | 0.0 | ||
| PANTHER | 1 | 519 | 519 | 7.7E-293 | – | |
| TIGRFAM | 2 | 506 | 505 | 7.1E-186 | ||
| SUPERFAMILY | 2 | 503 | 502 | 7.83E-60 | ||
| Pfam | 4 | 506 | 503 | 7.1E-92 | ||
| PRINTS | 8 | 34 | 27 | 1.7E-45 | ||
| PRINTS | 63 | 90 | 28 | 1.7E-45 | ||
| SUPERFAMILY | 117 | 179 | 63 | 1.25E-12 | ||
| Gene3D | 118 | 390 | 273 | 3.3E-186 | ||
| Gene3D | 153 | 359 | 207 | 3.3E-186 | ||
| SUPERFAMILY | 165 | 356 | 192 | 9.42E-63 | ||
| PRINTS | 248 | 271 | 24 | 1.7E-45 | ||
| PRINTS | 330 | 355 | 26 | 1.7E-45 | ||
| SUPERFAMILY | 344 | 389 | 46 | 1.1E-11 | ||
| PRINTS | 378 | 399 | 22 | 1.7E-45 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | Protein refolding | The process carried out by a cell that restores the biological activity of an unfolded or misfolded protein, using helper proteins such as chaperones. |
Expression pattern of LotjaGi4g1v0083300.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…