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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0087000 |
| Transcript ID | LotjaGi4g1v0087000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription factor Pur-alpha 1; TAIR: AT2G32080.1 purin-rich alpha 1; Swiss-Prot: sp|Q9SKZ1|PUR_ARATH Transcription factor Pur-alpha 1; TrEMBL-Plants: tr|A0A151UB56|A0A151UB56_CAJCA Transcription factor Pur-alpha 1; Found in the gene: LotjaGi4g1v0087000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:11557027..11561082) extracted from Lotus japonicus Gifu genome v1.2.
GTGTAATAAAATCAGAAGTAACCTCATTATAGTTCATTTCACTTGTACGGGTACACTATTTAATGTCGACGCTGAAGTTA ACCTCCAGGTATAAGTCATTCCAAACTTGCACATACATACAGTAATTAAGTAATTACCACCACCAATACAATCCCCGCAG CTCAAAACAAATTGACTTTGTAGCGGTGAAAATAAAGATCACATCAAATGGATCTGCGAACAATAGCCTCGCCTTATGTG CTCACATCGGGAATTACGTCATCGTACTCCTTCTACTACTACTAGCTCCAGTCATTCATTCACACATTCACTCATTCATT CATTCCACTCCCGATTCCGATTCCGAACGAAACCCTTGGATTCGGCGATGCCGCTTTATTGTTAACAATCAGATCTAGAT AACTTCATTGAGTAGCGGCGCGGCGGAGATGGAGGGGAATTCCGGCGGTGGTGGTGGTGGCGGAAGCGGCGGTGGAGGCG GCGGCGGTGGAGGTTCTGATGTGGAGCTTCTGTGCAAGACGTTGCAGGTGGAGCACAAGCTGTTCTACTTCGATCTGAAG GAGAATCCTCGCGGTCGCTACCTCAAGATTTCGGAGAAGACTTCTGCTACGAGGTCCACCATCATCGTTCCGTTCTCCGG CATTTCCTGGTTTCTCGATCTCTTCAATTACTATGTTAACTCTGACGATCAAGACCTCTTCAGTAAGGAACTGCAGCTTG ACACCAAGGTAACTCAACCCACCCTCACTCTTCAATTCAGCTCCAAAGATTTCAATCTCACCACATTGATTGTAGTGTTT TTATCAAATTGATTTGTTAGAGATGCATAATTGTTGCCAAATTTAGAGTAAACAATCAATTTTCATTTGCAGGACTCAGG TAGTAAGTAGTATACAAAAGTATGAATTTGGTAACAATTTCGCTTAATTGCACCTCCGATTGCTCGTTCGCGATTCGCTT TAAGTGGGGACCAAAAGTGCAATTAAGCCTAACGATTTTGTATCTTTGACCGACTAATTTGATGAAAAGCATTCATTTGA TGGAGGCCAAACTGACAGATTTTTCCTTTTGTTTTTCAGGTTTTTTACTTCGACATTGGGGAGAATAGGAGGGGCCGCTT CTTAAAGGTACTTGTTACTTGAATTAGGTTTAATATGCTTTTTATGTTTGTTGGTTTGATGACTATTGTTCTTGACTTTA TTTTTTCCACATAGACATGTCAGAGTTTTGCAGTGGTATGTTTCTGTATTGCTGCAGAGGGAAGGTCAAAACATCTAGGA TTTGTAGAGTTTACAATTGGTGGTTTTAGGCTTTTAGCATGCATGTTTTTTCATGAGCTATAAGGAAATTTAGTTAATGG CATTGAAGGTGTTGTGATCAACCAAACCCTGGTATGAAAAGGTGGAAAATGAATAGCAGGTTTTACCATTTCAACTTGTT TATCAGTTGGAAAGAGCCTGATATATATAACAGGTTAGGGATATTAATAACCTTAGGATTTGAATGAAGATTTTCTTTTT CTTTTTTAAATCAAAACTAGGAATGTGAAACAAAAATGTAAATGTGTGGTAATTGATTGGGCTGCTGCTTGTTAGACATT CCTAAATAGTTGCTTGAATGCATAATACTACTTTAAGCTCTTGGAATTACACACTCTTCCTGGTCAATGGTTTATATGCA AGCATTTTGCTCTGCAGATTTTTTTGTAGAATTATTTTGGTAATGGTGGAAACAAAGTGCTTGCATATAAACATTGTGGA TTTGTATGGCTTGAACTCTGAAAGTAAAGGCCTGATTACAATGAGAAAAAGAGAACCTTATGGAAGTGAGCTTTATCTGT AAAAATCATGCCTTGGCAGATTTCTGATTTATCTTAGCATTGACTTCTGAAGCTTAGTTTTTAGATGTTTGACTGAATCT CTTAAGGTTGCAAAAAGCTGTATCTTGTTTTGCATCTATTTGGGCTTACCTAATTTTATTGTGGAATTTCTATCTTAGGA TGAATATTTTATGTATGTTTTTTTTGTGTGTCAAGATTATGATTCTAATTTATTTTTGAAGGTGTCGGAGGCTTCTGTAA GCAGAAACCGTAGCACTATAATTGTTCCTGCAGGAAGCTCCAGGGACGAAGGGTGGGCTGCATTCAGAAACATTTTGGCA GAGATTAATGAGGCATCAAGGCTTTTCATTATGCCCAATCAGGTTTCCTTAATTTGCATGTAGACATTTTTTGTAGTTCC AATTTATCTTCTAGGATCTGTTTAATGTCATCTAATTGTTTGTATTGCACAGCAGCAAAATTCTGAATCCTCAGAGCGTC TTGTCGGACTTTCGGATGATGTTGGTGCTGGCTTCATATCTGGTCATAGTACACAACCTGCAACCTCTTCTGAATTGAAT GTGGACAGGTCTGTTGATTTACCAGCTCAGGATGAAATTGGAAACTTGGGGGTCTCAAAAGTTATCAGGGCTGATCAAAA AAGATTCTTCTTTGATCTTGGGAGCAATAACAGGGGTCATTTCTTAAGAATATCTGAGGTTTGTTGCCATTGTCTTATTG TCCTTTACCCTTTATTATGTTTTAGTGTTCGAATATGACTTTCTGCTTTAAATTCTTGTTATTTCATTGCAGGTTGCAGG TTCTGATCGTTCCTCCATCATCCTTCCTCTGTCAGGGCTCAAGCAGTTTCATGAGATCGTTGGTCACTTTGTTGAAATCA CCAAGGACCGAATCGAGGGAATGGCAGTTGCAAATGTCCGCACAGTTGATCCCCCTCAAAGATGAGTGCTAACATATGGG GTTTTCTGTGACAACAAGTAGTCACTCTCGGCCAAGGTTTCGTTAGGGAATGGGTGTTATCGCTGTATCTGATTGTGCTA TTTTTATTTTTATTTTTCCTCAGCCTTCTCCTTCTCATGTCATCTTCAATTAATGCTTTTGAAATAATCCAAACACTGGT TGGTTGGTTAGCAGAATAAATGGAATATCTTGGCAAGGTCAATATGAATAGGAAATAACAAAAGAGAAATGAACCAGAGA CTTGTATTTGTTTGGATAGTTTGGCACCCGGTCTATATGTTGTAATAATGATTGTTTAATTATTTTGCTTTGCTGCACAG TTTTCACATGGATTTAAAGTTCTCATACAGGCTGAGGTATCAACCACCATGCGTACCATATTTTTAGGTTCGATGATTGG CTTCCTCCTTGCTTAAACTTAGCTTTCATAGTTTTACCATCATTTATCTGTTTTTTTTTGTCAATTCATTTATCTGTTTC TTGTGTATCTAAACTTGGGCCAAAACTATTTGGACCATCCTCATTTACTATCCACACCATCCTTTTGAGCAAAAATACAA TTATACCCCCAGACTTAAAAAAAACTGAATCAATCAAACAGGAAAAGAAAACTTCTCCCCACACCATCTCCCTCTCTCAC GGTTTCTCTCTTTCTCTCGGCCCTTTCATTCTCAACTTTCCCAAATGAAAAAAAAAAAAAAACCGTAGCCACCACCCTGA TCTTTGTTGGAGAAGGAAGGAAGGAGGAAGAAGGATCTTGAAGAAGTTGGAGAAGGAAGCAAGAAGAAGAAGCAAAGGAA CAAGAAAGAGGAAGAAGAGGAAGAAGGAGAAGTCAAACATCATCTTGACAAAATCGCTTGGTTTCCCGATCTGTTTCAAT ACACAATTTAAATTGCGGTAGCTTTATGCTTACGGCAATTTAAATTGGGGTAGTACTATGTTCCTCTGTTTTTCTGTTCC TTGATATCCTTTGGGTTTTTGAATCGCAAAATCGGGTTGTGTTCGTGAGCCTTGGACAGAACATAAGAGAAATCGATTTC TAAAACCTTCTGTTAAATTCAAAACCTGCCTGCTATGTTCCACTGTTGGATCCGCAATTAAAATTGCGATAGCTTTATCC TTTCCGTCATTTTAATTGCGGTAGTGCTATGTTTCTGATTGTTTGATCTGCAATTAAAATTGAGTAAACTACCGCAATTT AAATTGAGTAAACTACCACAATTAAAATTGAGTGAACTACCGCAATTTTAATTGAG
CDS sequence (LotjaGi4g1v0087000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGGGAATTCCGGCGGTGGTGGTGGTGGCGGAAGCGGCGGTGGAGGCGGCGGCGGTGGAGGTTCTGATGTGGAGCT TCTGTGCAAGACGTTGCAGGTGGAGCACAAGCTGTTCTACTTCGATCTGAAGGAGAATCCTCGCGGTCGCTACCTCAAGA TTTCGGAGAAGACTTCTGCTACGAGGTCCACCATCATCGTTCCGTTCTCCGGCATTTCCTGGTTTCTCGATCTCTTCAAT TACTATGTTAACTCTGACGATCAAGACCTCTTCAGTAAGGAACTGCAGCTTGACACCAAGGTTTTTTACTTCGACATTGG GGAGAATAGGAGGGGCCGCTTCTTAAAGGTGTCGGAGGCTTCTGTAAGCAGAAACCGTAGCACTATAATTGTTCCTGCAG GAAGCTCCAGGGACGAAGGGTGGGCTGCATTCAGAAACATTTTGGCAGAGATTAATGAGGCATCAAGGCTTTTCATTATG CCCAATCAGCAGCAAAATTCTGAATCCTCAGAGCGTCTTGTCGGACTTTCGGATGATGTTGGTGCTGGCTTCATATCTGG TCATAGTACACAACCTGCAACCTCTTCTGAATTGAATGTGGACAGGTCTGTTGATTTACCAGCTCAGGATGAAATTGGAA ACTTGGGGGTCTCAAAAGTTATCAGGGCTGATCAAAAAAGATTCTTCTTTGATCTTGGGAGCAATAACAGGGGTCATTTC TTAAGAATATCTGAGGTTGCAGGTTCTGATCGTTCCTCCATCATCCTTCCTCTGTCAGGGCTCAAGCAGTTTCATGAGAT CGTTGGTCACTTTGTTGAAATCACCAAGGACCGAATCGAGGGAATGGCAGTTGCAAATGTCCGCACAGTTGATCCCCCTC AAAGATGA
Protein sequence (LotjaGi4g1v0087000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEGNSGGGGGGGSGGGGGGGGGSDVELLCKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVPFSGISWFLDLFN YYVNSDDQDLFSKELQLDTKVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSSRDEGWAAFRNILAEINEASRLFIM PNQQQNSESSERLVGLSDDVGAGFISGHSTQPATSSELNVDRSVDLPAQDEIGNLGVSKVIRADQKRFFFDLGSNNRGHF LRISEVAGSDRSSIILPLSGLKQFHEIVGHFVEITKDRIEGMAVANVRTVDPPQR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 10 | 282 | 273 | 1.1E-87 | ||
| Gene3D | 20 | 86 | 67 | 8.3E-19 | – | |
| SMART | 26 | 87 | 62 | 3.9E-23 | ||
| Pfam | 30 | 84 | 55 | 5.2E-9 | ||
| Gene3D | 87 | 156 | 70 | 1.4E-21 | – | |
| SMART | 89 | 156 | 68 | 6.5E-25 | ||
| Pfam | 90 | 151 | 62 | 1.2E-9 | ||
| Gene3D | 207 | 279 | 73 | 1.9E-20 | – | |
| Pfam | 209 | 272 | 64 | 9.5E-13 | ||
| SMART | 215 | 276 | 62 | 5.2E-26 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA polymerase II regulatory region sequence-specific DNA binding | Interacting selectively and non-covalently with a specific sequence of DNA that is part of a regulatory region that controls the transcription of a gene or cistron by RNA polymerase II. | ||
| Molecular function | Purine-rich negative regulatory element binding | Interacting selectively and non-covalently with a 30-bp purine-rich negative regulatory element; the best characterized such element is found in the first intronic region of the rat cardiac alpha-myosin heavy chain gene, and contains two palindromic high-affinity Ets-binding sites (CTTCCCTGGAAG). The presence of this element restricts expression of the gene containing it to cardiac myocytes. |
Expression pattern of LotjaGi4g1v0087000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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