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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0114500 |
| Transcript ID | LotjaGi4g1v0114500.2 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | PQ-loop repeat family protein / transmembrane family protein; TAIR: AT4G36850.1 PQ-loop repeat family protein / transmembrane family protein; Swiss-Prot: sp|Q7TT49|MRCKB_RAT Serine/threonine-protein kinase MRCK beta; TrEMBL-Plants: tr|G7LFJ3|G7LFJ3_MEDTR PQ-loop protein/transmembrane family protein; Found in the gene: LotjaGi4g1v0114500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:16547998..16553722) extracted from Lotus japonicus Gifu genome v1.2.
GTCCGACAGAGTTTTCACTATCACTAGTTGCGTCTCGTTGTGTCTTACTAGTGCTATTTCGGTGAGCTATGTTCCTATAA AACCAGCTCCTGCTATCTTTTCAAAGACACACCAGTGACACCACCACCTTTCCATTTCTCAGCTGAAACTCGCACACAAA AAAGAGAAAGAAGGTTAAAGATTATTATGGCACCTTCTTACTGTGTGAATGAGAGGAAACCCTGTGTAGGATGGGTTGAG ACATACTTCAATGACTGTCTTTGCACCATGAAAGATGACATCTCGTTCAGTCTTGGACTTACCAGTTTAGCATTCTGGGG AATAGCAGAAATCCCTCAAATCATCACCATTTTTCGCACCAAGTCCAACCATGGAATGTCCCTTGCCTTTCTCTGCACTT GGGTCGCTGGGTTCGTTCCATTTTCAATTTAATTCATACACTTTTTCACTTTTTACTATTGTTGCGAAATCATTTATAGG TATCATGTTTTACTAAATGCATGTTTGGAAACTCGTTGAAAATCCACCTAACTAAATTAAGATGTACAAAAGTAACTTTC TTATGATATAATGGTCTTTATGAACAATGCAATTCTGGCTGCAGTGGCAATTTCAGAATTTATGAAAAAAATTAACTCTA GAGTTTGTGGCCGTTCAAAACTGTCACAAACCGTAAGTGTCGCAACTTTCACATATATTTCCATATCCATGAATCTCCAC TACTGATTATGATTTTGACTTCATTGATATTTTGAACGAGTTTATAGTACAAATGTAAAATATATGGGAACAAAGGGTTG ATTAAGAATATTTTGATTTTGATGCAGAGACATATGCAACCTGGTAGGTTGCCTTCTGGAACCAGCTACGGTGAGTCACT CTGAACCAAATGAACTATTAAATGTTTTGTTTGGTTGCAAGGTGGTCCTGAAACAGAGAGCCCTGACATTCAATGCAACT GGGTGGCCTTGATGTTCTCTGTTATCCTGATGATGCTCTGTATCATATCATCCACTACGTTCTCTACATTTTTTTCATTA TTTGTGATTCTCTGGACTCACTTTTTGTCATTTTGCTGTTTGTTTTTTCCTGTTTGGATATGGATATGGATGCACGTGCT GATGCAGCTGCCCACACAGTATTACACTGCATTGGTAAATAATTGCAAGTTCCAATTTTTTGTTGTATCTTGTTCTTCTT TGCACATTGTATATTTCAAATGTTTATCCTGATTGAGAAATCAACTTATGTAGCTGTGATGTTATACAATAAAAAATGTT TTGTTGATTTGCTCACACTTTCCTTAGAGCGTAAAAGAAGTGGTGTCAAGCCATAGAAGAAAACGAAAGAGAGCATAAGA TGTGATATATATATGTTATAATAAGAAAAAAAAAATTAGAAATAGTTCACAATTTGCGAAAATCATGTAAAAATATAACG AGGTATTATGAATAAACTCATACTCCTTCTATATAGATAATAAAATTCTTTAAAACTCATTTGATTATTCAATCTAACTT GGGTACACAGGCCGAGGGAGGGGATATGCTGTTGCTATGATCCCCTAAAGCTTTTTTATTTTATTTTCTGATATATATGT ATGTAAGGTGTAAAAATCATTGTAAACATGTCATATTTTTTTATCTCAGCCTCTCTTTGAACTTAGCCTCCTAATATCAA ATTCCTACCTCTATCACTAGTGTCTAGGTACATGTCTGATTTTGTTTGAGTAAGGTCTCAATTCGAGTTTTATAGATGAA AAAAATCAATGAAAAAGCTAACACCACCACGATATCAATGTTCTCACTTCTCATGATGGATACATACATATGATGTGATA CACTAAAAAAAAATTACTCAAACAACAATTGTAACTGTTGAGAAGTATCACATTAGCTTAAAATATGTTAAAGTAAGTCT TATTGTTAAGTCATCATCGCTTTTTGGGTAGAGTATGTCCTAGCTCAAATTCTAAGATAGTATTAGAGTCTTTTCTATAT CTGTTTATTGGAGGCCTCTTATATATGGGTGGTCACTTGCGGATATTTATTCCTGTAAATTTCACGTTTCATATGGTCAT CCCTTGAATGTGAGAGAGGGTGTTTAAGAATCTCACATTAATTAACAATATGACTAATAAGTTCTTACTTTCTACGGATT GCTTCTTTCGCCTCTTTCACCATCAAAGTGCCTATGGTACCGGTTCATATTTGATTAGCCGAAGCTCACCCCTAAACTAT CTTTTAGAGTAAAATTAAGCCCAACATACATTTTAATAGTAATATCTTACTTTACACTCTAAAATATTGTGTAAAAACAA TATATGTATTTATATAGATTTTTTTTATTCTTAGTTCGGCCCTCTTGTTAACTTCGTTTTTTATAGCAACGTTAGGCGCA GTAAGGAAAAAAAAAACTATAGGGGGGGAATTAGTAGATCTCCATATCAAGGGATGGATCTGATAAAGGAACTTGTGCAG ATATTATCTCAGGGTTAAGCCTTCATTTAGGTCCAAGTTTTGGTAATTTGGGAGGAGGCACTTCTTTAAGAAAATAAAAG GCATGAGCATGACAAGAGTTCGTGGGGGAAGAATTTACGTTAGAAGGTTGAAGCCACGCTTTTTATATGATTTACAACTA CATGATGTGTCTCAAAAAGGATTGTTGGCATCTTTAAAAAATCTGTAACAGCTATTAAGGCAGTCGAAGAGACTCGCTAG TCGTTAAGGTAAACTAGTTGTTGGAAGGACCAACCGTAGGTCTAGGTTTAGTCGATGGCATGCTAAGGTGAAATGACTAG AGGGCAAAGTCATGAATGTGGACAAGAATTGAGGAAAGGTACATGGGCTCAATCCGGAGTTGAAGATATTTTACGGGCTT CTAGAAGATCTACATAGTGGCAGGTGATTGTTAATTGTTGTAGGCTTGTTAAATTTGCCTCTATAAATCAAGGAAAAAAC ACAACTCAAACATTTATCTTTTGCATTTAGTTGTTGACTTAGTTCATAGCTTTACCTTAGTCACAATTTCTCAATAGCGA TCACTAAGAGATTTTTAAAGTGTTTTACAAACCTACATTGAGGAACATGGTCTCTTACTCGAGTAATTACTTAATTAGAA AATCGTTACGTTGCTTTCTCAGCCGACCCACACAGCTACATAGTCACAATCTATTTGTAAACCAACAAAGATAAAATCTT TATTTAAACCAATTAGTCCCCTATACTCAGTTGTATTAAGGTATCATTAATATTCCACCTGTTTAACCTACAAAATCACA AGATCTTAATTAGCAGTTGTTATTGTGATTAACAGCTTTACATGAGCACCACGATCTTGTTAGTATCGCAAGTCATATAT TTTGACTACATCAGTAGATGGTGTACACATCGTCACAACATCAACAACAAAGGGGTACATTTCCAATTTCTTTGACTCCT AATAGAAATACTTAAGCCCTGTTTTTTGGCTAATTAATATCAAATGTCTATCTTGTAGCAGACTCATGAGGAAGAGGAAA GACCATTGAAACCGAAAGCTAGTGAGGAGTCTGAGATTCCAATACCAAATGGCACACCCAGAGCTGCACCTAGACGAGAG TATTACTATATGTAAGAACAATTTCCTAGCAATTAGTGTCAATTGTAAAATTTAATTTGCATTTTAGAAGTAAAATTAGT TCAAATTGTTATATATGTGTGACATGAAAAATGAACTAAAGTGCTTGAGTTCTAATTATGCAGGTCAGCAAGGTCATTGG CTGGAAGTGCCACTCCACCCTCGCTTAGCTACATAAGAGCTGCTAGAAGTGGCCCATCAGCCATGGAATTCAACGGCGCG GACTCTTCTTCTGACGATGAAGCACCTCCACCTACCTCTGCATCTCGTTCTCTAGCTGTGAGTCACTCACTTGTTTGCCT CAAACATGCTACTTTCCTCCCACTTCTAAAGTTAGACTTTATACCTCTTTAGACGCTGACCAAAAAACACTAATTATCCG AGCTTATCTAGTGTTTTTTTCTCAGATAAGGTGCAATAAGTATTATTTAGTCCGTATCCGAACTGACTCTTTGTAAATTT TAATGTGTCACACGCGTTTATTAAGTCTTACCTTGCTTTTTACGCGTACATTTCCAGGATCTTGAACCCGTGATCTCAAT CATTTGACAACGGCTTTAGTCTTCTTGAGCTTAATTAGTCTTTGCCTCCTTACAGTGATGATACATATAATAATGCTATA TGCTTGCTTGTGGTGCTTGACAGGGAAGTTATGGAACATTTCTAGCAGCATCCCTTAACTTGCCCCTGAAGAGTGATGCT TTGAGACATTATGGATACACAGGATTTACTACAAGAAAGCTCTTACAGGTAACACTGACTAGTGGCACTGGTGAAATAAT TAAATTGAATTACACTCATAATTTTATCTCGTGTTTGATTTCTTAATTAATTTGCATAACTACATTTTCTAGTTTCTAGT AATTAATTAAGATTCATGACAGGGAGACGAGATACATAATGCAATTGGTCTTTGGTTGGGATGGCTCATGGCAGCTATCT ATATAAGTAGTCGTCTTCCTCAAATATGGTTAAACGTAATTCTCCAACTTCTTTTCATTATTTAATTTTGGGTTTGGAAT ATTATTCCTTTATTTTGATTATATTGTTATGTCCTTATTTTTTTATCAGATTAAAAGAGGGAGTGTGGAGGTAATTTTAT CTTTAAACATTCTTCTTGCCTTTTGATTATGAATTAGCATTTCTACTGATTTATACATGCTCTGTTCTGATTATTACAGG GCTTAAGTCCTTTCATGTTCATCTTTGCACTGGTAGCTAATGTTACATACGTAGGAAGGTTCAATTTAATTCCCTCCTTC TGCATAAATCTGGTCCTAATTCTCCAAATTATGTGAAGTTATTTAGTTCTAATTAACATTTGTATTGATGCAGTATTCTT GTACGAGCTACGGAATTCAAAAGCATCAAAGCTAATATGCCATGGTTGCTGGATGCCACCGTTTGCGTGACACTGGACAT TTTTGTATCCTAAACATGCATGTTTAGACACACGCAGTAAAATCATAATGAAGCCAAAATCACAGTGGACAGAAGCAAAT TTCTTTAGTTTTTGCAATTGTTCACCATGATTTTTGTCTCACCATGATTTTCCTCCGTCTATCCAAGCATACACGAAGTT CTTGATGTTAGATTTTTTTTTTTTTTTTTTGAATTTCAGTGCTCTCTGTTAACCCTGCTGTGTATACTACAGAAAAAAGT ATGATTATAACTGAAACCTTAACAACATTTGATAGATAATATCGCAGTACATCTACTATAGATACTTTCAAAAGAGAGAA AGAGAAGCAAGTGATGATAGAGACTACAAAGAAGTGGGAAAAGCTGCTGCATCTTGAATCTTGAGCTGTGTAACTCTGCC TTAACTAATTGAAGTTCAATTTGAAACATCAGTGACAATCAGCATTTTCCCTAAATTGGGCCACTATTTTTGCTTATGTT ACACTCTTCAAGGAGATGGAAGTCAACAAATATTATACAGGGATTATATGATATATTAATGTATCCATTAACATGAACTT GCTTATGACATGATCGTAGTGGCTACTCTGATATTGATGTATTGATTACAGCCAAAACATGTGAGAGACCATAGTTTCTT TATTATAATTTTCAAGACTGATGAACCACCATATTTGTGTTGGAT
CDS sequence (LotjaGi4g1v0114500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCTCTGTTATCCTGATGATGCTCTGTATCATATCATCCACTACGTTCTCTACATTTTTTTCATTATTTGTGATTCT CTGGACTCACTTTTTGTCATTTTGCTGTTTGTTTTTTCCTGTTTGGATATGGATATGGATGCACGTGCTGATGCAGCTGC CCACACAGTATTACACTGCATTGCTTTACATGAGCACCACGATCTTGTTAGTATCGCAAGTCATATATTTTGACTACATC AGTAGATGGTGTACACATCGTCACAACATCAACAACAAAGGGACTCATGAGGAAGAGGAAAGACCATTGAAACCGAAAGC TAGTGAGGAGTCTGAGATTCCAATACCAAATGGCACACCCAGAGCTGCACCTAGACGAGAGTATTACTATATGTCAGCAA GGTCATTGGCTGGAAGTGCCACTCCACCCTCGCTTAGCTACATAAGAGCTGCTAGAAGTGGCCCATCAGCCATGGAATTC AACGGCGCGGACTCTTCTTCTGACGATGAAGCACCTCCACCTACCTCTGCATCTCGTTCTCTAGCTGGAAGTTATGGAAC ATTTCTAGCAGCATCCCTTAACTTGCCCCTGAAGAGTGATGCTTTGAGACATTATGGATACACAGGATTTACTACAAGAA AGCTCTTACAGGGAGACGAGATACATAATGCAATTGGTCTTTGGTTGGGATGGCTCATGGCAGCTATCTATATAAGTAGT CGTCTTCCTCAAATATGGTTAAACGTAATTCTCCAACTTCTTTTCATTATTTAA
Protein sequence (LotjaGi4g1v0114500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFSVILMMLCIISSTTFSTFFSLFVILWTHFLSFCCLFFPVWIWIWMHVLMQLPTQYYTALLYMSTTILLVSQVIYFDYI SRWCTHRHNINNKGTHEEEERPLKPKASEESEIPIPNGTPRAAPRREYYYMSARSLAGSATPPSLSYIRAARSGPSAMEF NGADSSSDDEAPPPTSASRSLAGSYGTFLAASLNLPLKSDALRHYGYTGFTTRKLLQGDEIHNAIGLWLGWLMAAIYISS RLPQIWLNVILQLLFII
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| TMHMM | 4 | 26 | 23 | - | – | |
| Phobius | 6 | 26 | 21 | - | – | |
| Phobius | 27 | 30 | 4 | - | – | |
| TMHMM | 31 | 50 | 20 | - | – | |
| Phobius | 31 | 51 | 21 | - | – | |
| Phobius | 52 | 56 | 5 | - | – | |
| PANTHER | 52 | 249 | 198 | 2.9E-84 | – | |
| PANTHER | 52 | 249 | 198 | 2.9E-84 | – | |
| TMHMM | 55 | 77 | 23 | - | – | |
| Phobius | 57 | 77 | 21 | - | – | |
| Phobius | 78 | 220 | 143 | - | – | |
| MobiDBLite | 94 | 108 | 15 | - | – | |
| MobiDBLite | 94 | 121 | 28 | - | – | |
| MobiDBLite | 159 | 179 | 21 | - | – | |
| Phobius | 221 | 239 | 19 | - | – | |
| Pfam | 226 | 249 | 24 | 2.7E-4 | ||
| Phobius | 240 | 257 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0114500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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