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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR006603
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 41 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 7.044s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0064369.1
n.a. PREDICTED: cystinosin homolog isoform 2 [Glycine max] gi|356570367|ref|XP_003553361.1| chr0 22191027 22192151 -
2 domain predictions
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Lj0g3v0132099.1
n.a. PREDICTED: cystinosin homolog [Cicer arietinum] gi|502089534|ref|XP_004488939.1| chr0 60245693 60248200 -
3 domain predictions
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Lj0g3v0132099.3
n.a. PREDICTED: cystinosin homolog [Cicer arietinum] gi|502089534|ref|XP_004488939.1| chr0 60245693 60248414 -
3 domain predictions
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Lj0g3v0215599.1
n.a. PREDICTED: cystinosin homolog [Cicer arietinum] gi|502089534|ref|XP_004488939.1| chr0 109253185 109255607 +
3 domain predictions
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Lj0g3v0274609.1
n.a. PQ-loop repeat-containing protein [Medicago truncatula] gi|357497257|ref|XP_003618917.1| chr0 142397581 142404432 +
3 domain predictions
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Lj0g3v0274609.2
n.a. PQ-loop repeat-containing protein [Medicago truncatula] gi|357497257|ref|XP_003618917.1| chr0 142397581 142406617 +
3 domain predictions
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Lj0g3v0341409.1
n.a. PREDICTED: cystinosin homolog isoform 1 [Glycine max] gi|356570365|ref|XP_003553360.1| chr0 178887277 178891879 -
2 domain predictions
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Lj1g3v3750630.1
n.a. PREDICTED: cystinosin homolog [Cicer arietinum] gi|502089540|ref|XP_004488941.1| chr1 43022580 43025740 -
3 domain predictions
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Lj1g3v3750630.2
n.a. PREDICTED: cystinosin homolog [Cicer arietinum] gi|502089540|ref|XP_004488941.1| chr1 43022580 43024622 -
3 domain predictions
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Lj1g3v3750660.1
n.a. PREDICTED: cystinosin homolog [Cicer arietinum] gi|502089534|ref|XP_004488939.1| chr1 43029233 43030640 -
3 domain predictions
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Lj1g3v3750670.1
n.a. PREDICTED: cystinosin homolog [Cicer arietinum] gi|502089534|ref|XP_004488939.1| chr1 43030993 43031357 -
3 domain predictions
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Lj1g3v4058560.2
n.a. Cystinosin/ERS1p repeat [Medicago truncatula] gi|124359535|gb|ABD28651.2| chr1 47912003 47920040 -
3 domain predictions
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Lj2g3v1817270.1
n.a. PREDICTED: protein RTC2-like [Glycine max] gi|356496804|ref|XP_003517255.1| chr2 27356074 27360032 -
3 domain predictions
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Lj4g3v0924510.1
n.a. PREDICTED: seven transmembrane protein 1-like [Cicer arietinum] gi|502161054|ref|XP_004512003.1| chr4 13640677 13644577 +
3 domain predictions
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Lj4g3v0924510.2
n.a. PREDICTED: protein RTC2-like [Glycine max] gi|356496804|ref|XP_003517255.1| chr4 13640677 13646287 +
3 domain predictions
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Lj5g3v0294890.1
n.a. Cystinosin/ERS1p repeat [Medicago truncatula] gi|124359705|gb|ABD32623.2| chr5 2637596 2642821 +
3 domain predictions
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LotjaGi1g1v0617300.1
n.a. Cystinosin like; TAIR: AT5G40670.1 PQ-loop repeat family protein / transmembrane family protein; Swiss-Prot: sp|P57758|CTNS_ARATH Cystinosin homolog; TrEMBL-Plants: tr|I3SM86|I3SM86_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0617300 LjG1.1_chr1 116393819 116398124 -
3 domain predictions
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LotjaGi1g1v0617400.1
n.a. Cystinosin like; TAIR: AT5G40670.1 PQ-loop repeat family protein / transmembrane family protein; Swiss-Prot: sp|P57758|CTNS_ARATH Cystinosin homolog; TrEMBL-Plants: tr|I3T3G0|I3T3G0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0617400 LjG1.1_chr1 116401504 116410069 -
3 domain predictions
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LotjaGi1g1v0617400.10
n.a. Cystinosin like; TAIR: AT5G40670.1 PQ-loop repeat family protein / transmembrane family protein; Swiss-Prot: sp|P57758|CTNS_ARATH Cystinosin homolog; TrEMBL-Plants: tr|I3T3G0|I3T3G0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0617400 LjG1.1_chr1 116407155 116417964 -
3 domain predictions
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LotjaGi1g1v0617400.11
n.a. Cystinosin like; TAIR: AT5G40670.1 PQ-loop repeat family protein / transmembrane family protein; Swiss-Prot: sp|P57758|CTNS_ARATH Cystinosin homolog; TrEMBL-Plants: tr|I3T3G0|I3T3G0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0617400 LjG1.1_chr1 116415414 116418165 -
3 domain predictions
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LotjaGi1g1v0617400.2
n.a. Cystinosin like; TAIR: AT5G40670.1 PQ-loop repeat family protein / transmembrane family protein; Swiss-Prot: sp|P57758|CTNS_ARATH Cystinosin homolog; TrEMBL-Plants: tr|I3T3G0|I3T3G0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0617400 LjG1.1_chr1 116401504 116410069 -
3 domain predictions
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LotjaGi1g1v0617400.3
n.a. Cystinosin like; TAIR: AT5G40670.1 PQ-loop repeat family protein / transmembrane family protein; Swiss-Prot: sp|P57758|CTNS_ARATH Cystinosin homolog; TrEMBL-Plants: tr|I3T3G0|I3T3G0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0617400 LjG1.1_chr1 116401504 116410069 -
3 domain predictions
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LotjaGi1g1v0617400.4
n.a. Cystinosin like; TAIR: AT5G40670.1 PQ-loop repeat family protein / transmembrane family protein; Swiss-Prot: sp|P57758|CTNS_ARATH Cystinosin homolog; TrEMBL-Plants: tr|I3T3G0|I3T3G0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0617400 LjG1.1_chr1 116401533 116417012 -
3 domain predictions
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LotjaGi1g1v0617400.5
n.a. Cystinosin like; TAIR: AT5G40670.1 PQ-loop repeat family protein / transmembrane family protein; Swiss-Prot: sp|P57758|CTNS_ARATH Cystinosin homolog; TrEMBL-Plants: tr|I3T3G0|I3T3G0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0617400 LjG1.1_chr1 116401533 116417012 -
3 domain predictions
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LotjaGi1g1v0617400.6
n.a. Cystinosin like; TAIR: AT5G40670.1 PQ-loop repeat family protein / transmembrane family protein; Swiss-Prot: sp|P57758|CTNS_ARATH Cystinosin homolog; TrEMBL-Plants: tr|I3T3G0|I3T3G0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0617400 LjG1.1_chr1 116401585 116409831 -
3 domain predictions
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LotjaGi1g1v0617400.7
n.a. Cystinosin like; TAIR: AT5G40670.1 PQ-loop repeat family protein / transmembrane family protein; Swiss-Prot: sp|P57758|CTNS_ARATH Cystinosin homolog; TrEMBL-Plants: tr|I3T3G0|I3T3G0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0617400 LjG1.1_chr1 116401585 116417873 -
3 domain predictions
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LotjaGi1g1v0617400.8
n.a. Cystinosin like; TAIR: AT5G40670.1 PQ-loop repeat family protein / transmembrane family protein; Swiss-Prot: sp|P57758|CTNS_ARATH Cystinosin homolog; TrEMBL-Plants: tr|I3T3G0|I3T3G0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0617400 LjG1.1_chr1 116401585 116417873 -
3 domain predictions
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LotjaGi1g1v0617400.9
n.a. Cystinosin like; TAIR: AT5G40670.1 PQ-loop repeat family protein / transmembrane family protein; Swiss-Prot: sp|P57758|CTNS_ARATH Cystinosin homolog; TrEMBL-Plants: tr|I3T3G0|I3T3G0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0617400 LjG1.1_chr1 116407042 116418165 -
3 domain predictions
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LotjaGi1g1v0654600.1
n.a. PQ-loop repeat family protein / transmembrane family protein; TAIR: AT2G41050.1 PQ-loop repeat family protein / transmembrane family protein; Swiss-Prot: sp|Q12010|YPQ1_YEAST Probable vacuolar amino acid transporter YPQ1; TrEMBL-Plants: tr|K7KEJ3|K7KEJ3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0654600 LjG1.1_chr1 121392919 121405129 -
3 domain predictions
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LotjaGi1g1v0654600.2
n.a. PQ-loop repeat family protein / transmembrane family protein; TAIR: AT2G41050.1 PQ-loop repeat family protein / transmembrane family protein; Swiss-Prot: sp|Q12010|YPQ1_YEAST Probable vacuolar amino acid transporter YPQ1; TrEMBL-Plants: tr|K7KEJ3|K7KEJ3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0654600 LjG1.1_chr1 121393236 121405007 -
3 domain predictions
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LotjaGi2g1v0081400.1
n.a. Cystinosin-like protein; TAIR: AT5G40670.1 PQ-loop repeat family protein / transmembrane family protein; Swiss-Prot: sp|P57758|CTNS_ARATH Cystinosin homolog; TrEMBL-Plants: tr|A0A072U6W8|A0A072U6W8_MEDTR Cystinosin-like protein; Found in the gene: LotjaGi2g1v0081400 LjG1.1_chr2 22174631 22176956 +
3 domain predictions
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LotjaGi2g1v0081500.1
n.a. Cystinosin like; TAIR: AT5G40670.1 PQ-loop repeat family protein / transmembrane family protein; Swiss-Prot: sp|P57758|CTNS_ARATH Cystinosin homolog; TrEMBL-Plants: tr|A0A072TV48|A0A072TV48_MEDTR Lysosomal cystine transporter family protein; Found in the gene: LotjaGi2g1v0081500 LjG1.1_chr2 22179037 22184786 +
3 domain predictions
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LotjaGi2g1v0081700.1
n.a. Cystinosin like; TAIR: AT5G40670.1 PQ-loop repeat family protein / transmembrane family protein; Swiss-Prot: sp|P57758|CTNS_ARATH Cystinosin homolog; TrEMBL-Plants: tr|I1N6Y1|I1N6Y1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0081700 LjG1.1_chr2 22275807 22287428 +
2 domain predictions
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LotjaGi2g1v0089600.1
n.a. PQ-loop repeat family protein / transmembrane family protein; TAIR: AT2G41050.1 PQ-loop repeat family protein / transmembrane family protein; Swiss-Prot: sp|P38279|YPQ3_YEAST Probable vacuolar amino acid transporter YPQ3; TrEMBL-Plants: tr|I3T5L4|I3T5L4_MEDTR Uncharacterized protein; Found in the gene: LotjaGi2g1v0089600 LjG1.1_chr2 26181878 26191335 -
3 domain predictions
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LotjaGi2g1v0394700.1
n.a. PQ-loop repeat family protein / transmembrane family protein; TAIR: AT4G36850.1 PQ-loop repeat family protein / transmembrane family protein; Swiss-Prot: sp|Q12010|YPQ1_YEAST Probable vacuolar amino acid transporter YPQ1; TrEMBL-Plants: tr|G7KAU2|G7KAU2_MEDTR PQ-loop protein/transmembrane family protein; Found in the gene: LotjaGi2g1v0394700 LjG1.1_chr2 89216048 89220625 -
3 domain predictions
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LotjaGi4g1v0114500.1
n.a. PQ-loop repeat family protein / transmembrane family protein; TAIR: AT4G36850.1 PQ-loop repeat family protein / transmembrane family protein; Swiss-Prot: sp|Q12010|YPQ1_YEAST Probable vacuolar amino acid transporter YPQ1; TrEMBL-Plants: tr|G7LFJ3|G7LFJ3_MEDTR PQ-loop protein/transmembrane family protein; Found in the gene: LotjaGi4g1v0114500 LjG1.1_chr4 16547975 16553739 +
3 domain predictions
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LotjaGi4g1v0114500.2
n.a. PQ-loop repeat family protein / transmembrane family protein; TAIR: AT4G36850.1 PQ-loop repeat family protein / transmembrane family protein; Swiss-Prot: sp|Q7TT49|MRCKB_RAT Serine/threonine-protein kinase MRCK beta; TrEMBL-Plants: tr|G7LFJ3|G7LFJ3_MEDTR PQ-loop protein/transmembrane family protein; Found in the gene: LotjaGi4g1v0114500 LjG1.1_chr4 16547998 16553722 +
2 domain predictions
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LotjaGi4g1v0114500.3
n.a. PQ-loop repeat family protein / transmembrane family protein; TAIR: AT4G36850.1 PQ-loop repeat family protein / transmembrane family protein; Swiss-Prot: sp|Q95XZ6|LAAT1_CAEEL Lysosomal amino acid transporter 1; TrEMBL-Plants: tr|G7LFJ3|G7LFJ3_MEDTR PQ-loop protein/transmembrane family protein; Found in the gene: LotjaGi4g1v0114500 LjG1.1_chr4 16547998 16553722 +
3 domain predictions
 –
LotjaGi4g1v0114500.4
n.a. PQ-loop repeat family protein / transmembrane family protein; TAIR: AT4G36850.1 PQ-loop repeat family protein / transmembrane family protein; Swiss-Prot: sp|Q12010|YPQ1_YEAST Probable vacuolar amino acid transporter YPQ1; TrEMBL-Plants: tr|G7LFJ3|G7LFJ3_MEDTR PQ-loop protein/transmembrane family protein; Found in the gene: LotjaGi4g1v0114500 LjG1.1_chr4 16547998 16553722 +
3 domain predictions
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LotjaGi4g1v0114500.5
n.a. PQ-loop repeat family protein / transmembrane family protein; TAIR: AT4G36850.1 PQ-loop repeat family protein / transmembrane family protein; Swiss-Prot: sp|P38279|YPQ3_YEAST Probable vacuolar amino acid transporter YPQ3; TrEMBL-Plants: tr|G7LFJ3|G7LFJ3_MEDTR PQ-loop protein/transmembrane family protein; Found in the gene: LotjaGi4g1v0114500 LjG1.1_chr4 16548010 16553704 +
3 domain predictions
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LotjaGi5g1v0030600.1
n.a. Mannose-P-dolichol utilization defect 1-like protein; TAIR: AT4G07390.1 Mannose-P-dolichol utilization defect 1 protein; Swiss-Prot: sp|Q8VY63|MPU12_ARATH Mannose-P-dolichol utilization defect 1 protein homolog 2; TrEMBL-Plants: tr|G7I2B1|G7I2B1_MEDTR Mannose-P-dolichol utilization defect 1-like protein; Found in the gene: LotjaGi5g1v0030600 LjG1.1_chr5 4913911 4919980 +
3 domain predictions
 –