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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0115700 |
| Transcript ID | LotjaGi4g1v0115700.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Sugar transporter, putative; TAIR: AT4G36670.1 Major facilitator superfamily protein; Swiss-Prot: sp|Q8GXR2|PLT6_ARATH Probable polyol transporter 6; TrEMBL-Plants: tr|I1JCR3|I1JCR3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0115700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:16786913..16788494) extracted from Lotus japonicus Gifu genome v1.2.
TTGACCATAAATTTTCTCTATCAAAATTTAAGTGAAGAATTTGATAATGATTCTCAATATTACTCTTGTTTTATCTACAG GGTCATCTAGAATGAGATGTTGTAAACTAAATTTTTCCTTGTCTTTTATAATATCTAAGATTTTGGATAAATGCACACCT TGTAATTAATACACACCTTATTTTGATTTCAGATACTGGTGTTATGAGTGGAGCCATGCTATTCATAAAGGAAGATATGG AAATAAGTGATACCCAACAAGAGGTTCTAGCTGGAATCTTAAACCTTTGTGCATTGGTGGGATCTTTAGTTGCTGGAAGA ACGTCTGATTACATTGGTCGTCGCTACACAATCTTCTTGGCTTCTGTTCTCTTCATGCTAGGTGCAGTTCTCATGGGGTA TGGCCCAAACTATACAATTTTAATGGTGGGAAGGTGTGTTGGTGGCTTGGGTGTGGGTTTTGCGCTTATGATAGCACCAG TTTACTCAGCAGAGATTTCCTCAGCATCATCTCGAGGTTTTCTAACCTCCTTACCTGAGTTTTGTATTGGAATTGGAATC CTGCTTGGATATATCTCAAACTACTTCTTGGGAAAATTGACTTTGAAGCTAGGATGGAGATTAATGCTTGGAATTGCAGC ATTACCTTCGCTTGCCTTGTCTTTGGGCATTCTAACAATGCCAGAGTCTCCAAGATGGTTGGTGATGCAAGGTCGTCTAG GAAGCGCCAAGAAGGTCCTTTTGCAAGTTTCTAATACCACGCAAGAGGCTGAACTTCGTTTCAGAGAAATAAAAGTTGCT GCTGGGTTTGATGAGAATTGCAATGATGAGATTGTGAAACAACCTCAAAAGTCTCACCTCGGTGAAGGTGTTTGGAAAGA GTTGCTTCTGAGACCCACACCACCTGTTCGTTGGATGCTGATTGCGGCGGTTGGAATTCACTTCTTTGAACATGCAACTG GCATTGAAGCTGTGATGTTATATAGCCCAAGAATCTTTAAGAAAGCTGGTGTTACAAACAAGGATAAGCTCTTACTAGCA ACAATTGGAGTAGGCCTTACAAAAATTACTTTTCTTATAATAGCCTCATTTTTGCTAGACAAAGTTGGTAGAAGACGCCT CTTGCAAATAAGCACGGGAGGAATGGTTTGTGCACTAACACTTCTAGGTTTCAGCTTGACTATGGTGGACCATTCCAACG AAAAGCTCTTGTGGGCCTTGAGCCTGAGTATTTTGGCAACGTACTCCTATGTTGCTTTCTTTAATATTGGGCTTGGGCCT GTGACATGGGTGTATAGTTCAGAGATATTTCCTTTGAGGTTGAGAGCACAAGGAGCTAGCATAGGAGTTGCGGTGAACAG GTCCATGAATGCTACAGTCTCTATGAGTTTTATTTCGATCTACAAAGCAATCACTATAGGTGGGAGTTTTTTCATGTTTG CTGGCATATCTGTCTTAGCTTGGGTGTTCTTCTACATTTTCCTCCCAGAAACCAAGGGCGTGGCCTTAGAAGAAATAGAG ATGATTTTCAGCAAAAAACCTAGTGGTAAAAATGTAGCAACATAATCGGAGACAAGATATAA
CDS sequence (LotjaGi4g1v0115700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTCTCAATATTACTCTTGTTTTATCTACAGGGTCATCTAGAATGAGATATACTGGTGTTATGAGTGGAGCCATGCT ATTCATAAAGGAAGATATGGAAATAAGTGATACCCAACAAGAGGTTCTAGCTGGAATCTTAAACCTTTGTGCATTGGTGG GATCTTTAGTTGCTGGAAGAACGTCTGATTACATTGGTCGTCGCTACACAATCTTCTTGGCTTCTGTTCTCTTCATGCTA GGTGCAGTTCTCATGGGGTATGGCCCAAACTATACAATTTTAATGGTGGGAAGGTGTGTTGGTGGCTTGGGTGTGGGTTT TGCGCTTATGATAGCACCAGTTTACTCAGCAGAGATTTCCTCAGCATCATCTCGAGGTTTTCTAACCTCCTTACCTGAGT TTTGTATTGGAATTGGAATCCTGCTTGGATATATCTCAAACTACTTCTTGGGAAAATTGACTTTGAAGCTAGGATGGAGA TTAATGCTTGGAATTGCAGCATTACCTTCGCTTGCCTTGTCTTTGGGCATTCTAACAATGCCAGAGTCTCCAAGATGGTT GGTGATGCAAGGTCGTCTAGGAAGCGCCAAGAAGGTCCTTTTGCAAGTTTCTAATACCACGCAAGAGGCTGAACTTCGTT TCAGAGAAATAAAAGTTGCTGCTGGGTTTGATGAGAATTGCAATGATGAGATTGTGAAACAACCTCAAAAGTCTCACCTC GGTGAAGGTGTTTGGAAAGAGTTGCTTCTGAGACCCACACCACCTGTTCGTTGGATGCTGATTGCGGCGGTTGGAATTCA CTTCTTTGAACATGCAACTGGCATTGAAGCTGTGATGTTATATAGCCCAAGAATCTTTAAGAAAGCTGGTGTTACAAACA AGGATAAGCTCTTACTAGCAACAATTGGAGTAGGCCTTACAAAAATTACTTTTCTTATAATAGCCTCATTTTTGCTAGAC AAAGTTGGTAGAAGACGCCTCTTGCAAATAAGCACGGGAGGAATGGTTTGTGCACTAACACTTCTAGGTTTCAGCTTGAC TATGGTGGACCATTCCAACGAAAAGCTCTTGTGGGCCTTGAGCCTGAGTATTTTGGCAACGTACTCCTATGTTGCTTTCT TTAATATTGGGCTTGGGCCTGTGACATGGGTGTATAGTTCAGAGATATTTCCTTTGAGGTTGAGAGCACAAGGAGCTAGC ATAGGAGTTGCGGTGAACAGGTCCATGAATGCTACAGTCTCTATGAGTTTTATTTCGATCTACAAAGCAATCACTATAGG TGGGAGTTTTTTCATGTTTGCTGGCATATCTGTCTTAGCTTGGGTGTTCTTCTACATTTTCCTCCCAGAAACCAAGGGCG TGGCCTTAGAAGAAATAGAGATGATTTTCAGCAAAAAACCTAGTGGTAAAAATGTAGCAACATAA
Protein sequence (LotjaGi4g1v0115700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MILNITLVLSTGSSRMRYTGVMSGAMLFIKEDMEISDTQQEVLAGILNLCALVGSLVAGRTSDYIGRRYTIFLASVLFML GAVLMGYGPNYTILMVGRCVGGLGVGFALMIAPVYSAEISSASSRGFLTSLPEFCIGIGILLGYISNYFLGKLTLKLGWR LMLGIAALPSLALSLGILTMPESPRWLVMQGRLGSAKKVLLQVSNTTQEAELRFREIKVAAGFDENCNDEIVKQPQKSHL GEGVWKELLLRPTPPVRWMLIAAVGIHFFEHATGIEAVMLYSPRIFKKAGVTNKDKLLLATIGVGLTKITFLIIASFLLD KVGRRRLLQISTGGMVCALTLLGFSLTMVDHSNEKLLWALSLSILATYSYVAFFNIGLGPVTWVYSSEIFPLRLRAQGAS IGVAVNRSMNATVSMSFISIYKAITIGGSFFMFAGISVLAWVFFYIFLPETKGVALEEIEMIFSKKPSGKNVAT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 452 | 452 | 47.065 | ||
| Phobius | 1 | 41 | 41 | - | – | |
| Gene3D | 2 | 467 | 466 | 1.6E-118 | – | |
| CDD | 19 | 459 | 441 | 0.0 | – | |
| PANTHER | 19 | 471 | 453 | 1.7E-215 | – | |
| PANTHER | 19 | 471 | 453 | 1.7E-215 | – | |
| TIGRFAM | 19 | 459 | 441 | 2.4E-95 | ||
| SUPERFAMILY | 19 | 460 | 442 | 9.68E-61 | ||
| Pfam | 36 | 463 | 428 | 4.8E-103 | ||
| Phobius | 42 | 59 | 18 | - | – | |
| TMHMM | 42 | 59 | 18 | - | – | |
| ProSitePatterns | 58 | 75 | 18 | - | ||
| Phobius | 60 | 70 | 11 | - | – | |
| TMHMM | 69 | 91 | 23 | - | – | |
| Phobius | 71 | 89 | 19 | - | – | |
| Phobius | 90 | 94 | 5 | - | – | |
| Phobius | 95 | 115 | 21 | - | – | |
| PRINTS | 95 | 114 | 20 | 1.5E-16 | ||
| TMHMM | 96 | 118 | 23 | - | – | |
| ProSitePatterns | 100 | 125 | 26 | - | ||
| Phobius | 116 | 126 | 11 | - | – | |
| Phobius | 127 | 145 | 19 | - | – | |
| TMHMM | 128 | 150 | 23 | - | – | |
| Phobius | 146 | 156 | 11 | - | – | |
| TMHMM | 157 | 179 | 23 | - | – | |
| Phobius | 157 | 180 | 24 | - | – | |
| Phobius | 181 | 296 | 116 | - | – | |
| PRINTS | 270 | 280 | 11 | 1.5E-16 | ||
| Phobius | 297 | 318 | 22 | - | – | |
| TMHMM | 297 | 319 | 23 | - | – | |
| ProSitePatterns | 315 | 332 | 18 | - | ||
| Phobius | 319 | 329 | 11 | - | – | |
| TMHMM | 326 | 348 | 23 | - | – | |
| Phobius | 330 | 349 | 20 | - | – | |
| Phobius | 350 | 355 | 6 | - | – | |
| Phobius | 356 | 378 | 23 | - | – | |
| TMHMM | 363 | 385 | 23 | - | – | |
| PRINTS | 364 | 385 | 22 | 1.5E-16 | ||
| Phobius | 379 | 397 | 19 | - | – | |
| PRINTS | 387 | 399 | 13 | 1.5E-16 | ||
| Phobius | 398 | 418 | 21 | - | – | |
| Phobius | 419 | 429 | 11 | - | – | |
| TMHMM | 426 | 448 | 23 | - | – | |
| Phobius | 430 | 448 | 19 | - | – | |
| Phobius | 449 | 474 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi4g1v0115700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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