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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0189600 |
| Transcript ID | LotjaGi4g1v0189600.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein NRT1/ PTR FAMILY 5.1; TAIR: AT1G32450.1 nitrate transporter 1.5; Swiss-Prot: sp|Q9LQL2|PTR14_ARATH Protein NRT1/ PTR FAMILY 7.3; TrEMBL-Plants: tr|A0A151SKI8|A0A151SKI8_CAJCA Peptide transporter PTR1; Found in the gene: LotjaGi4g1v0189600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:43420940..43422882) extracted from Lotus japonicus Gifu genome v1.2.
TTAGGACAAGACAATGCTGATGCTGCTAACAATGTGAGCAAGTGGACTGGCACAGTTTACCTCTTCTCTCTTGTGGGTGC TTTCCTCAGTGATTCTTATTGGGGAAGGTACAAAACTTGTGCCATCTTTCAAGGCATCTTTGTACTGGTAAGTAACATAC TCTTAATTTCATTTTCCTCTCTTTTTCTTCTAGCTTGCCACATTCTTTGGGTAATTAACTTGTCTTCTGGTTTGATATAA CAGGGTCTAGTATTCTTGTCCCTTTCATCATACCTCTCATTGCTTAGACCTAAAGGTTGTGGGAGTGAACTGCTTCACTG TGGGAAACATTCAAGCTTGGAGATGGGGATGTTCTACCTATCAATCTACCTCATTGCCTTAGGGAATGGAGGGTATCAAC CAAACATTGCCACATTTGGAGCTGACCAATTTGATGAAGAGCACTCAAAGGAAGGTTACTCAAAGGTGGCATTTTTCAGC TACTTCTACCTGGCTCTGAACCTTGGTTCACTTTTCTCAAACACCATTCTGGGCTATTTTGAAGACGAAGGAATTTGGGC TCTTGGGTTCTGGGTCTCTGCAGGCTCTGCCTTTGCAGCACTTGTGTTGTTTCTTGTTGGGACACCAAGATATAGACACT TCAAACCTTGTGGCAATCCACTTTCAAGATTCTGCCAAGTCCTTGTTGCTGCATGGAGGAAATTGGGAGTTCAGATGACA TCAAATGGAGAGGACTTGTATGTCGTGGATGAAGAGGAATCTTCCACCAACAGCAACAACAGAAAGATTATTCTCCACAC CCATGGATTCAAGTAAGTAGTACAAGCTAATTTCAACTGAAACATTGTAGTGGAACACTTTTAATAAGGTTACATTACAT GGAATGATTTTACTAGTATTTGTGTAATAGGCTAGTATCATGTTTGGACAGAAGCGTATACTCTTAAGAAAAAATTAGCT GATCCAAACATTCTACTTAGATGTTGTGACATGAGTCATGACTTCCAAATTAAACACCACTATCATTCTTGTTTCTAATG AGCCATAACAATTTGATCAATTTGCTATATTGTCATCTGCATTGCAGGTTTCTGGATAGGGCAGCATACATATCTTCAAG AGATCTAGATGACAAGAAAGGAGGCTTTTACAATCCGTGGCGTCTCTGTCCTATAACTCAAGTTGAAGAAGTAAAGTGCA TACTAAGACTTCTTCCAATTTGGCTATGCACCATAATCTACTCAGTAGTTTTCACACAAATGGCTTCTCTTTTCGTGGAG CAAGGTGCCGCCATGAAAACTACAATTTACCATTTCAGAATACCCCCAGCAAGCATGTCAAGCTTTGATATCCTCAGCGT AGCAGTCTTCATCTTCTTCTACCGCCGCGTCATCGATCCTCTTGTGGGAAAACTTAAAAAAACAAAATCCAAGGGACTCA CTGAGCTTCAGAGGATGGGAATTGGGCTTGTCATAGCTGTAATGGCAATGGTTTCAGCAGGAATAGTCGAATGCTACAGG CTCAAGTACGCAAAACACGGCACAAGCTCTCTAAGCATCTTCTGGCAAGTTCCTCAGTACGCACTCGTAGGAGCATCTGA GGTTTTTATGTATGTAGGACAATTAGAGTTCTTCAATGCTCAAACACCAGAAGGGTTAAAGAGCTTTGGAAGTGCTCTTT GTATGACTTCAATCTCACTCGGGAACTATGTGAGTAGCATAATTGTTAGCATAGTTATGAAGATCTCCACTCAGGATCAC ATGCCAGGGTGGATCCCCGGCAACCTAAACAGAGGTCACCTAGATAGGTTTTTCTTCCTCTTAGCTGCATTGACATCACT GGACTTGATTGCATACATTGCAGTCGCAAAGTGGTTCAAGAACATACAGACGGAATGCAAACATGACGAGGATGATAAGA TTGGTAACTTAATTAAGGTCTAA
CDS sequence (LotjaGi4g1v0189600.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGATGTTCTACCTATCAATCTACCTCATTGCCTTAGGGAATGGAGGGTATCAACCAAACATTGCCACATTTGGAGC TGACCAATTTGATGAAGAGCACTCAAAGGAAGGTTACTCAAAGGTGGCATTTTTCAGCTACTTCTACCTGGCTCTGAACC TTGGTTCACTTTTCTCAAACACCATTCTGGGCTATTTTGAAGACGAAGGAATTTGGGCTCTTGGGTTCTGGGTCTCTGCA GGCTCTGCCTTTGCAGCACTTGTGTTGTTTCTTGTTGGGACACCAAGATATAGACACTTCAAACCTTGTGGCAATCCACT TTCAAGATTCTGCCAAGTCCTTGTTGCTGCATGGAGGAAATTGGGAGTTCAGATGACATCAAATGGAGAGGACTTGTATG TCGTGGATGAAGAGGAATCTTCCACCAACAGCAACAACAGAAAGATTATTCTCCACACCCATGGATTCAAGTTTCTGGAT AGGGCAGCATACATATCTTCAAGAGATCTAGATGACAAGAAAGGAGGCTTTTACAATCCGTGGCGTCTCTGTCCTATAAC TCAAGTTGAAGAAGTAAAGTGCATACTAAGACTTCTTCCAATTTGGCTATGCACCATAATCTACTCAGTAGTTTTCACAC AAATGGCTTCTCTTTTCGTGGAGCAAGGTGCCGCCATGAAAACTACAATTTACCATTTCAGAATACCCCCAGCAAGCATG TCAAGCTTTGATATCCTCAGCGTAGCAGTCTTCATCTTCTTCTACCGCCGCGTCATCGATCCTCTTGTGGGAAAACTTAA AAAAACAAAATCCAAGGGACTCACTGAGCTTCAGAGGATGGGAATTGGGCTTGTCATAGCTGTAATGGCAATGGTTTCAG CAGGAATAGTCGAATGCTACAGGCTCAAGTACGCAAAACACGGCACAAGCTCTCTAAGCATCTTCTGGCAAGTTCCTCAG TACGCACTCGTAGGAGCATCTGAGGTTTTTATGTATGTAGGACAATTAGAGTTCTTCAATGCTCAAACACCAGAAGGGTT AAAGAGCTTTGGAAGTGCTCTTTGTATGACTTCAATCTCACTCGGGAACTATGTGAGTAGCATAATTGTTAGCATAGTTA TGAAGATCTCCACTCAGGATCACATGCCAGGGTGGATCCCCGGCAACCTAAACAGAGGTCACCTAGATAGGTTTTTCTTC CTCTTAGCTGCATTGACATCACTGGACTTGATTGCATACATTGCAGTCGCAAAGTGGTTCAAGAACATACAGACGGAATG CAAACATGACGAGGATGATAAGATTGGTAACTTAATTAAGGTCTAA
Protein sequence (LotjaGi4g1v0189600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGMFYLSIYLIALGNGGYQPNIATFGADQFDEEHSKEGYSKVAFFSYFYLALNLGSLFSNTILGYFEDEGIWALGFWVSA GSAFAALVLFLVGTPRYRHFKPCGNPLSRFCQVLVAAWRKLGVQMTSNGEDLYVVDEEESSTNSNNRKIILHTHGFKFLD RAAYISSRDLDDKKGGFYNPWRLCPITQVEEVKCILRLLPIWLCTIIYSVVFTQMASLFVEQGAAMKTTIYHFRIPPASM SSFDILSVAVFIFFYRRVIDPLVGKLKKTKSKGLTELQRMGIGLVIAVMAMVSAGIVECYRLKYAKHGTSSLSIFWQVPQ YALVGASEVFMYVGQLEFFNAQTPEGLKSFGSALCMTSISLGNYVSSIIVSIVMKISTQDHMPGWIPGNLNRGHLDRFFF LLAALTSLDLIAYIAVAKWFKNIQTECKHDEDDKIGNLIKV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 434 | 434 | 4.2E-256 | ||
| Phobius | 1 | 43 | 43 | - | – | |
| PANTHER | 1 | 434 | 434 | 4.2E-256 | – | |
| SUPERFAMILY | 2 | 430 | 429 | 1.44E-19 | ||
| CDD | 2 | 419 | 418 | 1.93949E-179 | – | |
| Pfam | 3 | 379 | 377 | 1.6E-87 | ||
| Phobius | 44 | 65 | 22 | - | – | |
| TMHMM | 44 | 66 | 23 | - | – | |
| Phobius | 66 | 70 | 5 | - | – | |
| TMHMM | 71 | 93 | 23 | - | – | |
| Phobius | 71 | 92 | 22 | - | – | |
| Phobius | 93 | 197 | 105 | - | – | |
| TMHMM | 198 | 220 | 23 | - | – | |
| Phobius | 198 | 220 | 23 | - | – | |
| Phobius | 221 | 239 | 19 | - | – | |
| Phobius | 240 | 259 | 20 | - | – | |
| TMHMM | 240 | 259 | 20 | - | – | |
| Phobius | 260 | 279 | 20 | - | – | |
| Phobius | 280 | 302 | 23 | - | – | |
| TMHMM | 280 | 302 | 23 | - | – | |
| Phobius | 303 | 313 | 11 | - | – | |
| Phobius | 314 | 333 | 20 | - | – | |
| TMHMM | 317 | 339 | 23 | - | – | |
| Phobius | 334 | 353 | 20 | - | – | |
| TMHMM | 352 | 374 | 23 | - | – | |
| Phobius | 354 | 378 | 25 | - | – | |
| Phobius | 379 | 397 | 19 | - | – | |
| TMHMM | 398 | 420 | 23 | - | – | |
| Phobius | 398 | 416 | 19 | - | – | |
| Phobius | 417 | 441 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi4g1v0189600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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