Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi4g1v0213100 |
Transcript ID | LotjaGi4g1v0213100.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Methylsterol monooxygenase 1-2; TAIR: AT4G12110.1 sterol-4alpha-methyl oxidase 1-1; Swiss-Prot: sp|Q8L7W5|SMO11_ARATH Methylsterol monooxygenase 1-1; TrEMBL-Plants: tr|G7JK82|G7JK82_MEDTR Sterol C4-methyl oxidase 1-2; Found in the gene: LotjaGi4g1v0213100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:49625640..49628259) extracted from Lotus japonicus Gifu genome v1.2.
ATGCTTCCCTACCACTCAATTCACGAAGCCACGGCGGCTCTCGGCCGCAACCTCACCGCCGCGGAAACCCTATGGTTCAA CTACTCCGCTACGAAGTCCGATTACTTCCTCTACTGCCACAACATTCTCTTCCTCTTCCTCATCTTCTCCCTCGTCCCTC TCCCCTTCGTCTTCCTCGAGATCAAACGCCTCTCCCCCTTCGACGATTACAAGATCCAACCCAAGGTTCGCCTCTCCCTC CGTGACATGTTCGTCTGCTACAAGTCCGTCATGCGCATGTTCTTCCTCGTCGTCGGTCCCCTCCAACTCGTCTCCTATCC TTCCATCCAGGTTCTTCCATTCTCACACCTTCACACCGTTCTTGTCACCGTTGCATTTCCATTACCCTGTGTGATTCAGC AATTTTTGTTTGTTTTGGTTTTGATTTGATTTTCAGATAATTGGGATCAGAACGGGGTTGCCATTGCCATCAGGGTGGGA GATCCTGTGTCAATTGCTGGTGTATTTCGTGGTGGAGGATTACACCAATTACTGGATCCACAGGTTTCTTCACAACAAGT GGGGTTACGAGAAGATTCATCGCGTTCACCATGAGTACCAGGCTCCGATTGGGTACGCGGCGCCGTATGCTCACTGGGCT GAGATCTTAATCCTTGGGATTCCGTCGTTTCTTGGTCCTGCTATGGTTCCTGGTCACATTATCACGTTCTGGCTGTGGAT TGCGTTGCGCCAGATTGAGGCTATTGACACTCACAGCGGGTAAACCCTTTCTGTCCCTTTTGTTGATTTTCTTCAACAAC CTTTAAAAAATGTGCTTTTCATTTCAACGATATCGAATCTAGTAGTGGGTTGCTTTTTCTCTTTACTGTTTCACGCCTTT TCACTCCTTCATACCTTTATTGTGATTTACGTTTCTTAGTAAGATGATGAAAATCCTTCGCGGATTGTTTGTTTTTCGGT GTTTTAAGATGGTATGATTTGGTGCTAGTAGAGTGATTGGTGAGTGCTGGAAATCTTCTAGCTGAAGGGATGAAATGGAG GTTTCAGAATGGTTTTTGTCTTTAACTGTTTGTTCACTCTTGCTTCTGCTTTGTCATTACCTTCATTTATGCTAGCTGGA AGTCCCTAAAGAACTTCACCGGTTGAATACAGCATAGTTACAATTATTATGATAATAAGTGTTTAGTTTTGGCATTTGAG ATAAAAGGAAAAGGAATTGAACAAAAACGGAAGGAGGGAGCTTTCTTTCATATTTTGATATTGTTATCCATGTTTTCCGT TGTTTTTTATTTGTTAGAAAGCGCGAAAATGGACACTAACGGTTTTCCAAACATAATGGTAAACATTGTGATTCATTTTT AAGTTTCCAATATCAGCATGAGACCCGTGTGGTGGTAGTTATCATTTAACAAACGTTATATGGCTGAAAGCTTGGTGCTG AAGAAGAAACTTGCTAGTGTTTACTTTTCTTGAAGGTACTATTGGGGAATATTGTGATCAAGTGTGGTGCTAGTCTGCTG GATGCCATATTGAAATTCGTATAGGACAAAACATTCCTAGTTTGCTCTTTTGTTCTGTTCTCTTTTTCTTGTCAGCATTT GAACCTTGACCATCAAGATATTATTATGAAACAATTGCCATTTGGACCAGGAATGCCGACTCTTAGTTTTTTGCTCTAAT ACATATAATGTTAAATAAGAAATAAATAATGTAGAAGTCAAATTGGAGTTTGTTTAGGACAAGTCATTTTGCAAGGCTTG GATCTAGTACATATAATGTTCTTAATTGTACTGAGAAATATATCTTTCTGGTGTTTTCTGTGTCAACAATATTGGCGTGT ACACTACAGGACCTACTGGTTAAATGCAAAACTGAGAGTTAAATTGATTTCTATAAATCACTTCTACAGTTTTTTTGGGT ACATAAATCACTTCAACGGTTAATTGCTCTGGACTCTGGACCCAATATGTAAGCTATAAAGGTTTTATGTGTAGATACTC CCAATTATATCAGGAATATTCTTAGTTTTGCTGGGATGGAATATCCCTGCAGTGCTTTAAATTTCTAAATAAATGCTGAT ATTGCTCGTAGAAATTTATCTGGGTTGACTCTTTCTTCGCCATTGATATACATCAGCATATATCCAACCCCCTCCTTTAT GGGAAATTCAGTCTTCATTCTTCTCTAGTTTATGCATTGCAGTTTTGGTACCTGGCATTTATATTTTATTTACTACCTTA TCATGCGTCAGGTATGACTTCCCCTGGAATCCCACAAAATATATTCCATTTTATGGCGGCGCTGACTATCATGATTACCA TCATTATGTTGGAGGACAAAGCCAAAGCAATTTTGCTTCAGTTTTCACATACTGTGATTACATCTATGGAACTGACAAGG TTACATATCTGATTCTGAAATTATTTTTCTCTAAATAAATATCTGCGTGGTTTTATTTCCACATGTCAAATTGGGTTGCT AAGATTCTACTTTGTTATTGTCACAGGGTTACAGGTATCAGAAGAAAATACTTCGGAAGGTAAATTTATTAAGCTTTGTC ATTTGAGAAATGTGATTCCATATTGTGGTTAAGAACATTTTGTTTTCCAAAACAAAATGA
CDS sequence (LotjaGi4g1v0213100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTCCCTACCACTCAATTCACGAAGCCACGGCGGCTCTCGGCCGCAACCTCACCGCCGCGGAAACCCTATGGTTCAA CTACTCCGCTACGAAGTCCGATTACTTCCTCTACTGCCACAACATTCTCTTCCTCTTCCTCATCTTCTCCCTCGTCCCTC TCCCCTTCGTCTTCCTCGAGATCAAACGCCTCTCCCCCTTCGACGATTACAAGATCCAACCCAAGGTTCGCCTCTCCCTC CGTGACATGTTCGTCTGCTACAAGTCCGTCATGCGCATGTTCTTCCTCGTCGTCGGTCCCCTCCAACTCGTCTCCTATCC TTCCATCCAGATAATTGGGATCAGAACGGGGTTGCCATTGCCATCAGGGTGGGAGATCCTGTGTCAATTGCTGGTGTATT TCGTGGTGGAGGATTACACCAATTACTGGATCCACAGGTTTCTTCACAACAAGTGGGGTTACGAGAAGATTCATCGCGTT CACCATGAGTACCAGGCTCCGATTGGGTACGCGGCGCCGTATGCTCACTGGGCTGAGATCTTAATCCTTGGGATTCCGTC GTTTCTTGGTCCTGCTATGGTTCCTGGTCACATTATCACGTTCTGGCTGTGGATTGCGTTGCGCCAGATTGAGGCTATTG ACACTCACAGCGGGTATGACTTCCCCTGGAATCCCACAAAATATATTCCATTTTATGGCGGCGCTGACTATCATGATTAC CATCATTATGTTGGAGGACAAAGCCAAAGCAATTTTGCTTCAGTTTTCACATACTGTGATTACATCTATGGAACTGACAA GGGTTACAGGTATCAGAAGAAAATACTTCGGAAGGTAAATTTATTAAGCTTTGTCATTTGA
Protein sequence (LotjaGi4g1v0213100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLPYHSIHEATAALGRNLTAAETLWFNYSATKSDYFLYCHNILFLFLIFSLVPLPFVFLEIKRLSPFDDYKIQPKVRLSL RDMFVCYKSVMRMFFLVVGPLQLVSYPSIQIIGIRTGLPLPSGWEILCQLLVYFVVEDYTNYWIHRFLHNKWGYEKIHRV HHEYQAPIGYAAPYAHWAEILILGIPSFLGPAMVPGHIITFWLWIALRQIEAIDTHSGYDFPWNPTKYIPFYGGADYHDY HHYVGGQSQSNFASVFTYCDYIYGTDKGYRYQKKILRKVNLLSFVI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 279 | 279 | 3.4E-157 | – | |
Phobius | 1 | 34 | 34 | - | – | |
PANTHER | 1 | 279 | 279 | 3.4E-157 | – | |
Phobius | 35 | 59 | 25 | - | – | |
TMHMM | 36 | 58 | 23 | - | – | |
Phobius | 60 | 79 | 20 | - | – | |
Phobius | 80 | 98 | 19 | - | – | |
TMHMM | 92 | 114 | 23 | - | – | |
Phobius | 99 | 179 | 81 | - | – | |
Pfam | 131 | 265 | 135 | 9.3E-31 | ||
Phobius | 180 | 207 | 28 | - | – | |
TMHMM | 183 | 205 | 23 | - | – | |
Phobius | 208 | 286 | 79 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Iron ion binding | Interacting selectively and non-covalently with iron (Fe) ions. | ||
Biological process | Lipid biosynthetic process | The chemical reactions and pathways resulting in the formation of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. | ||
Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi4g1v0213100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…