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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PF04116
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 42 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 0.027s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0103419.1
n.a. PREDICTED: delta(7)-sterol-C5(6)-desaturase-like [Cicer arietinum] gi|502091398|ref|XP_004489538.1| chr0 44106437 44110645 +
2 domain predictions
4 GO terms
Lj0g3v0299729.1
n.a. PREDICTED: beta-carotene hydroxylase 2, chloroplastic-like isoform X1 [Cicer arietinum] gi|502164615|ref|XP_004513181.1| chr0 155722261 155725528 -
2 domain predictions
4 GO terms
Lj1g3v4156050.1
n.a. Protein WAX2 [Medicago truncatula] gi|357509471|ref|XP_003625024.1| chr1 49427619 49435255 -
2 domain predictions
4 GO terms
Lj2g3v1280020.1
n.a. PREDICTED: sphinganine C(4)-monooxygenase 1-like [Cicer arietinum] gi|502093755|ref|XP_004490042.1| chr2 20564083 20567183 -
2 domain predictions
4 GO terms
Lj2g3v1375520.1
n.a. Sterol 4-alpha-methyl-oxidase [Medicago truncatula] gi|357516749|ref|XP_003628663.1| chr2 21652110 21652791 -
2 domain predictions
4 GO terms
Lj2g3v1375540.1
n.a. PREDICTED: methylsterol monooxygenase 2-2-like [Cicer arietinum] gi|502093235|ref|XP_004489880.1| chr2 21657252 21660238 -
2 domain predictions
4 GO terms
Lj2g3v1902110.1
n.a. beta-carotene hydroxylase [Carica papaya] gi|325461582|gb|ADZ14893.1| chr2 28205975 28208473 +
2 domain predictions
4 GO terms
Lj3g3v0618210.1
n.a. PREDICTED: protein WAX2-like [Glycine max] gi|356520717|ref|XP_003529007.1| chr3 6772363 6780546 -
2 domain predictions
4 GO terms
Lj3g3v0618250.1
n.a. PREDICTED: protein ECERIFERUM 1-like [Cicer arietinum] gi|502155670|ref|XP_004510150.1| chr3 6788634 6801909 -
2 domain predictions
4 GO terms
Lj4g3v0287300.1
n.a. PREDICTED: fatty acid 2-hydroxylase-like [Glycine max] gi|356524916|ref|XP_003531074.1| chr4 3530434 3532829 +
2 domain predictions
4 GO terms
Lj4g3v0299420.1
n.a. Fatty acid 2-hydroxylase [Medicago truncatula] gi|357448649|ref|XP_003594600.1| chr4 3597694 3601787 +
2 domain predictions
4 GO terms
Lj4g3v1120540.1
n.a. Protein WAX2 [Medicago truncatula] gi|357509471|ref|XP_003625024.1| chr4 16870455 16878999 -
2 domain predictions
4 GO terms
Lj4g3v1302690.1
n.a. PREDICTED: methylsterol monooxygenase 1-1-like [Cicer arietinum] gi|502175906|ref|XP_004515763.1| chr4 19155748 19158892 +
2 domain predictions
4 GO terms
Lj5g3v1889400.1
n.a. PREDICTED: sphinganine C(4)-monooxygenase 1-like [Cicer arietinum] gi|502118803|ref|XP_004496405.1| chr5 26934006 26937563 +
2 domain predictions
4 GO terms
Lj5g3v1889410.1
n.a. n.a. chr5 26934006 26939602 -
2 domain predictions
4 GO terms
Lj5g3v1988680.1
n.a. PREDICTED: beta-carotene hydroxylase 2, chloroplastic-like [Cicer arietinum] gi|502119168|ref|XP_004496526.1| chr5 27927410 27929925 +
2 domain predictions
4 GO terms
Lj6g3v1049050.1
n.a. PREDICTED: protein WAX2-like [Glycine max] gi|356547835|ref|XP_003542310.1| chr6 11888618 11895140 -
2 domain predictions
4 GO terms
Lj6g3v1629500.1
n.a. Fatty acid 2-hydroxylase [Medicago truncatula] gi|357448649|ref|XP_003594600.1| chr6 18335064 18339625 -
2 domain predictions
4 GO terms
LotjaGi1g1v0664900.1
n.a. Fatty acid hydroxylase superfamily protein; TAIR: AT1G02205.2 Fatty acid hydroxylase superfamily; Swiss-Prot: sp|F4HVY0|CER1_ARATH Protein ECERIFERUM 1; TrEMBL-Plants: tr|G7KRL9|G7KRL9_MEDTR Fatty acid hydroxylase superfamily protein; Found in the gene: LotjaGi1g1v0664900 LjG1.1_chr1 122706112 122713663 +
2 domain predictions
4 GO terms
LotjaGi2g1v0075000.1
n.a. Delta(7)-sterol-C5(6)-desaturase; TAIR: AT3G02580.1 sterol 1; Swiss-Prot: sp|Q9ZT29|SC5D_TOBAC Delta(7)-sterol-C5(6)-desaturase; TrEMBL-Plants: tr|I3S5C2|I3S5C2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0075000 LjG1.1_chr2 19622007 19626593 +
2 domain predictions
4 GO terms
LotjaGi2g1v0075000.2
n.a. Delta(7)-sterol-C5(6)-desaturase; TAIR: AT3G02580.1 sterol 1; Swiss-Prot: sp|Q9ZT29|SC5D_TOBAC Delta(7)-sterol-C5(6)-desaturase; TrEMBL-Plants: tr|I3S5C2|I3S5C2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0075000 LjG1.1_chr2 19622026 19625981 +
2 domain predictions
4 GO terms
LotjaGi2g1v0075000.3
n.a. Delta(7)-sterol-C5(6)-desaturase; TAIR: AT3G02580.1 sterol 1; Swiss-Prot: sp|Q9ZT29|SC5D_TOBAC Delta(7)-sterol-C5(6)-desaturase; TrEMBL-Plants: tr|I3S5C2|I3S5C2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0075000 LjG1.1_chr2 19623659 19625981 +
2 domain predictions
4 GO terms
LotjaGi2g1v0124000.1
n.a. Beta-carotene hydroxylase; TAIR: AT4G25700.1 beta-hydroxylase 1; Swiss-Prot: sp|Q9SZZ8|BCH1_ARATH Beta-carotene 3-hydroxylase 1, chloroplastic; TrEMBL-Plants: tr|A0A151T4H1|A0A151T4H1_CAJCA Beta-carotene hydroxylase; Found in the gene: LotjaGi2g1v0124000 LjG1.1_chr2 45561131 45564470 -
2 domain predictions
4 GO terms
LotjaGi2g1v0304600.1
n.a. Sphingoid base hydroxylase 2; TAIR: AT1G14290.1 sphingoid base hydroxylase 2; Swiss-Prot: sp|Q9AST3|SBH2_ARATH Sphinganine C4-monooxygenase 2; TrEMBL-Plants: tr|I3T7X2|I3T7X2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0304600 LjG1.1_chr2 77808479 77811631 -
2 domain predictions
4 GO terms
LotjaGi2g1v0315600.1
n.a. Methylsterol monooxygenase 2-1; TAIR: AT2G29390.2 sterol 4-alpha-methyl-oxidase 2-2; Swiss-Prot: sp|Q8VWZ8|SMO22_ARATH Methylsterol monooxygenase 2-2; TrEMBL-Plants: tr|I3T333|I3T333_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0315600 LjG1.1_chr2 79112547 79115322 -
2 domain predictions
4 GO terms
LotjaGi2g1v0315700.1
n.a. Methylsterol monooxygenase 2-1; TAIR: AT1G07420.1 sterol 4-alpha-methyl-oxidase 2-1; Swiss-Prot: sp|Q8VWZ8|SMO22_ARATH Methylsterol monooxygenase 2-2; TrEMBL-Plants: tr|V7CH10|V7CH10_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0315700 LjG1.1_chr2 79116982 79121069 -
2 domain predictions
4 GO terms
LotjaGi2g1v0315700.2
n.a. Methylsterol monooxygenase 2-1; TAIR: AT1G07420.1 sterol 4-alpha-methyl-oxidase 2-1; Swiss-Prot: sp|Q8VWZ8|SMO22_ARATH Methylsterol monooxygenase 2-2; TrEMBL-Plants: tr|V7CKP9|V7CKP9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0315700 LjG1.1_chr2 79117205 79119622 -
2 domain predictions
4 GO terms
LotjaGi2g1v0315700.3
n.a. Methylsterol monooxygenase 2-1; TAIR: AT1G07420.1 sterol 4-alpha-methyl-oxidase 2-1; Swiss-Prot: sp|Q8VWZ8|SMO22_ARATH Methylsterol monooxygenase 2-2; TrEMBL-Plants: tr|V7CH10|V7CH10_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0315700 LjG1.1_chr2 79117879 79119622 -
2 domain predictions
4 GO terms
LotjaGi3g1v0073300.1
n.a. Fatty acid hydroxylase superfamily protein; TAIR: AT1G02205.2 Fatty acid hydroxylase superfamily; Swiss-Prot: sp|F4HVY0|CER1_ARATH Protein ECERIFERUM 1; TrEMBL-Plants: tr|K7KE60|K7KE60_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0073300 LjG1.1_chr3 8027701 8036172 -
2 domain predictions
4 GO terms
LotjaGi3g1v0073400.1
n.a. Fatty acid hydroxylase superfamily protein; TAIR: AT1G02205.2 Fatty acid hydroxylase superfamily; Swiss-Prot: sp|F4HVY0|CER1_ARATH Protein ECERIFERUM 1; TrEMBL-Plants: tr|A0A0B2RDR1|A0A0B2RDR1_GLYSO Protein WAX2; Found in the gene: LotjaGi3g1v0073400 LjG1.1_chr3 8044166 8057632 -
2 domain predictions
4 GO terms
LotjaGi4g1v0027100.1
n.a. Fatty acid 2-hydroxylase; TAIR: AT2G34770.1 fatty acid hydroxylase 1; Swiss-Prot: sp|O48916|FAH1_ARATH Dihydroceramide fatty acyl 2-hydroxylase FAH1; TrEMBL-Plants: tr|I3T5U8|I3T5U8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0027100 LjG1.1_chr4 3285202 3288834 +
2 domain predictions
4 GO terms
LotjaGi4g1v0027100.2
n.a. Fatty acid 2-hydroxylase; TAIR: AT2G34770.1 fatty acid hydroxylase 1; Swiss-Prot: sp|O48916|FAH1_ARATH Dihydroceramide fatty acyl 2-hydroxylase FAH1; TrEMBL-Plants: tr|I3T5U8|I3T5U8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0027100 LjG1.1_chr4 3285683 3287531 +
2 domain predictions
4 GO terms
LotjaGi4g1v0213100.1
n.a. Methylsterol monooxygenase 1-2; TAIR: AT4G12110.1 sterol-4alpha-methyl oxidase 1-1; Swiss-Prot: sp|Q8L7W5|SMO11_ARATH Methylsterol monooxygenase 1-1; TrEMBL-Plants: tr|G7JK82|G7JK82_MEDTR Sterol C4-methyl oxidase 1-2; Found in the gene: LotjaGi4g1v0213100 LjG1.1_chr4 49625372 49629363 +
2 domain predictions
4 GO terms
LotjaGi4g1v0213100.2
n.a. Methylsterol monooxygenase 1-2; TAIR: AT4G12110.1 sterol-4alpha-methyl oxidase 1-1; Swiss-Prot: sp|Q8L7W5|SMO11_ARATH Methylsterol monooxygenase 1-1; TrEMBL-Plants: tr|G7JK82|G7JK82_MEDTR Sterol C4-methyl oxidase 1-2; Found in the gene: LotjaGi4g1v0213100 LjG1.1_chr4 49625640 49628259 +
2 domain predictions
4 GO terms
LotjaGi4g1v0293700.1
n.a. Fatty acid hydroxylase superfamily protein; TAIR: AT5G57800.1 Fatty acid hydroxylase superfamily; Swiss-Prot: sp|Q8H1Z0|CER3_ARATH Protein ECERIFERUM 3; TrEMBL-Plants: tr|A0A151S9I0|A0A151S9I0_CAJCA Protein WAX2; Found in the gene: LotjaGi4g1v0293700 LjG1.1_chr4 66558677 66565373 +
2 domain predictions
4 GO terms
LotjaGi5g1v0284700.1
n.a. Sphingoid base hydroxylase 2; TAIR: AT1G14290.1 sphingoid base hydroxylase 2; Swiss-Prot: sp|Q9AST3|SBH2_ARATH Sphinganine C4-monooxygenase 2; TrEMBL-Plants: tr|I3S4G2|I3S4G2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0284700 LjG1.1_chr5 60128227 60132334 +
2 domain predictions
4 GO terms
LotjaGi5g1v0284700.2
n.a. Sphingoid base hydroxylase 2; TAIR: AT1G14290.1 sphingoid base hydroxylase 2; Swiss-Prot: sp|Q9AST3|SBH2_ARATH Sphinganine C4-monooxygenase 2; TrEMBL-Plants: tr|I3S4G2|I3S4G2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0284700 LjG1.1_chr5 60128807 60131778 +
2 domain predictions
4 GO terms
LotjaGi5g1v0296700.1
n.a. Beta-carotene hydroxylase; TAIR: AT4G25700.1 beta-hydroxylase 1; Swiss-Prot: sp|Q9SZZ8|BCH1_ARATH Beta-carotene 3-hydroxylase 1, chloroplastic; TrEMBL-Plants: tr|I3SJ50|I3SJ50_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0296700 LjG1.1_chr5 61360788 61364142 +
2 domain predictions
4 GO terms
LotjaGi6g1v0198600.1
n.a. Fatty acid hydroxylase superfamily protein; TAIR: AT5G57800.1 Fatty acid hydroxylase superfamily; Swiss-Prot: sp|Q8H1Z0|CER3_ARATH Protein ECERIFERUM 3; TrEMBL-Plants: tr|A0A1J7H5N6|A0A1J7H5N6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0198600 LjG1.1_chr6 49531579 49538539 +
2 domain predictions
4 GO terms
LotjaGi6g1v0268100.1
n.a. Fatty acid 2-hydroxylase-like protein; TAIR: AT2G34770.1 fatty acid hydroxylase 1; Swiss-Prot: sp|O48916|FAH1_ARATH Dihydroceramide fatty acyl 2-hydroxylase FAH1; TrEMBL-Plants: tr|A0A072V5H1|A0A072V5H1_MEDTR Fatty acid 2-hydroxylase-like protein; Found in the gene: LotjaGi6g1v0268100 LjG1.1_chr6 58291688 58297779 -
2 domain predictions
4 GO terms
LotjaGi6g1v0268100.2
n.a. Fatty acid 2-hydroxylase-like protein; TAIR: AT2G34770.1 fatty acid hydroxylase 1; Swiss-Prot: sp|O48916|FAH1_ARATH Dihydroceramide fatty acyl 2-hydroxylase FAH1; TrEMBL-Plants: tr|A0A072V5H1|A0A072V5H1_MEDTR Fatty acid 2-hydroxylase-like protein; Found in the gene: LotjaGi6g1v0268100 LjG1.1_chr6 58293279 58296364 -
2 domain predictions
4 GO terms
LotjaGi6g1v0268100.3
n.a. Fatty acid 2-hydroxylase-like protein; TAIR: AT2G34770.1 fatty acid hydroxylase 1; Swiss-Prot: sp|O48916|FAH1_ARATH Dihydroceramide fatty acyl 2-hydroxylase FAH1; TrEMBL-Plants: tr|A0A072V5H1|A0A072V5H1_MEDTR Fatty acid 2-hydroxylase-like protein; Found in the gene: LotjaGi6g1v0268100 LjG1.1_chr6 58293279 58296367 -
2 domain predictions
4 GO terms