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LotjaGi4g1v0223800.1

Overview

Field Value
Gene ID LotjaGi4g1v0223800
Transcript ID LotjaGi4g1v0223800.1
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Glyceraldehyde-3-phosphate dehydrogenase; TAIR: AT1G13440.1 glyceraldehyde-3-phosphate dehydrogenase C2; Swiss-Prot: sp|P34922|G3PC_PEA Glyceraldehyde-3-phosphate dehydrogenase, cytosolic; TrEMBL-Plants: tr|I3SYQ7|I3SYQ7_LOTJA Glyceraldehyde-3-phosphate dehydrogenase; Found in the gene: LotjaGi4g1v0223800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:52932006..52936582) extracted from Lotus japonicus Gifu genome v1.2.

ATTGTAACAAAAATATTATACTACATTATTACAGGCCGAAAACAAAGGCAGGCCACACTATGGGCTTGAACCTGGAATAT TCTTCAACCACATGACGTGGCCACCAAGAAAAAGACATCAACCAGTGGGCCCCGCTCCTCCTCTCAACGGCACAGATCAC GCCACCGAATTCACCGCTGCAGCATCACGAGTCATACACGGGCTTGGGCTTTGTACCACAGACAAAACCCCTAACCGCAC TAACCTACCCACCAGTCATTTCACCCTCTATATATAACCTTTTCCCCTAAACCCTATTTCATCGTTCACGTTTCTTCTAC AATCAACTGCTACTTCTTCATCCACTCTCACTCTCTCAACAACCATGGGTAATCACTCACTCACTCACAGCCTCTTCATG ATTTTCCTTTTCTGTTTGATTTTTCTCTTTAATCGCTTCAGTTAGTTCGATCTGATCTGAATTTTTGTTGAATTTTGTTT CCATGTTTGAGATCAGGCAAGATCAAGATCGGAATTAACGGTAAATATTCTTCATCCTTCGATCTATGTTCTTCTCTGGC TAGATCGGATCTATGATCTATCGTGTTGTATTACTGTTTGGAATTTCGTTTTTGTTGAATATTGTTTGGTTTGCTCACAG GATTCGGAAGGATCGGGCGTTTGGTGGCCAGAGTTGCTCTTACCAGAGACGATGTTGAACTTGTTGCTGTTAACGATCCA TTCATCACCACCGATTACATGGTACAAAACTCTTACTGAATTTTTCCGATCGGATTTTGGTTTAACGTGATTTTGTAGAT CTGATTCGTGTTTGTTTTTGTGTTTTGTGTGCAGACATACATGTTTAAGTATGACAGTGTTCACGGTCCATGGAAGCACC ACGAGGTCACTGTCAAGGACGCTAACACCCTTCTCTTTGGTGATAAGCCAGTCACTGTATTTGCAAACAGGTATTGTTTC CAATCTCAGATTGCTATGCATGTTATTATTTAATTTAATTTTTTTTTTAGTTAGATTTTAGTTCATTTGAAAATTACCTG TGTAATTGTTGAAGGTGTGGTATGTGGAAATTAAGTCTTGTTATGTTATTATTATTGATTTATTGATGCATTATGGGTTG GTTTAATTGATCCCTAAACTATGTGCGGAGATCCCAATGTTATTGATGTTTGTTTTTTTTAATCTGAAAGTACGGTGTTA GGCTTTAGTTTCATTCGATAATTACCTGTGAAGTTGTTTGTGTCCAAGGTGCGTTGTGTGGAAATGAATGGTTGATTGTT GTTATTGTTGAATCATATTTATACAACATTGGCTTTAACTATCCTGTATACTATGTGCTTCAGGAACCCAGAGGAGATCC CATGGGGTCAGACCGGAGCTGATATTGTTGTGGAGTCCACTGGAGTTTTCACTGACAAGGACAAGGCTGCTGCCCATTTG AAGGTTTGAATATCCGTGGCTTGCATTTTCTGTTGTTTAATTTTCTGTTAAGACTCATGACAATTCCTTAATTAGTGCTT ATACATGTATATGCTTGTTATTAAGTGGTCTGTTTTCATGTAGTTTGGTCTGATTGCGACATATTGCTTGAACTTGCCTA TACTTCATAGATTTGTTGCTTTCATGCATGATGCATCTCACTTTTTTTTTTCCGAAAACAGCCATGTGATTTATCAGGTC TATGTAGTTACTCGTTTGTGAAGTCTTAAGCTTTTTAACCAACTTTGAATTCAGTTCTAGTTAGCTACCGGCCTTCCACA TCTGAAGTTATATCTAATTGTTTGTAAATGGTATCGAAAAACTTTGTCATTCTTTTTAACTAACTTTGGTTTGATTGATA CAGGGTGGTGCCAAGAAGGTTATTATCTCTGCCCCCAGCAAAGATGCTCCCATGTTTGTTGTAGGTGTTAACGAGCATGA GTACAAGCCAGAGCTTAACATCATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCCCTTGCCAAGGTTTCCTTTC TTACCTTGCTGATATTTGTTACTCGGATTTTAGTTCTGCTTTGGCTGCTTGATGTCTTACATTTAGCTTATCATTTTTGT AGGTTATTAATGACAGATTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTGGTGGGTTTATTACTAGT TAGTTACGATTGCATTTCTTATCTCATGGCTTGCTAATTCATGTTTCCCATGCTGTTGTGCAAATCAGCCACTCAGAAGA CTGTTGATGGGCCATCCGCAAAAGACTGGAGAGGTGGAAGGGCTGCCTCATTCAACATCATTCCCAGCAGCACTGGAGCT GCTAAGGTGAGATGTTTGGCACCACATGTGGTGTTTCACATCACACTCTTTACCAGCAACCTTTTGTTGTTCATAGTCAC TGTTATCTGATGTTTTATTTCATTTTTTCTTTCTCAAGGCTGTTGGCAAAGTGCTTCCTGCTTTGAATGGAAAATTGACC GGGATGGCATTCCGTGTTCCTACTGTGGATGTCTCAGTTGTTGACCTCACAGTCAGACTGGAGAAGGCTGCCACCTATGA TCAAATTAAAGCTGCTATCAAGTAAGGGCACAATGCATGTGTTCTCCTCTTGGAGTTGTGTTTCAGAAGCACTTAATTTG AACTATAGTTTATGAGGACTTAAATGTTCTATTATGATATCTGCAAAGATGGCTGCATTATTTCTCCCTAATCCCCTTTC ATCTGGTTTGCAATATAGTTAATATTTGTGTCTTTGACAGGGAGGAGTCTGAGGGCAAATTGAAGGGAATCCTCGGTTAC ACTGAAGATGATGTGGTCTCAACTGACTTCATTGGCGACAACAGGTAAACGTTCTTACTTCTTAGCAGCAGCTTACAAGT TGTTAATTACAGGTTGCTACTGATGGTGTCTATCCTAAATTTCATTATCAAGTGGTTTAGATACAATACTAAAAATGCTT TATGCTTTCGACAAAAGGAATGGACTCCCTTTTATGTATTTGAGTCGGTAATTATTATTCACTGATTTCGTAATTAATAT TTCAGGTCAAGTATCTTTGATGCCAAGGCTGGAATTGCTTTGAATGACAACTTTGTCAAGCTTGTCTCGTGGTATGACAA CGAGATGGGATACAGGTAATCAACATCATACTATTTTTCTTTAATATTTTTTCCTTCGGATGATTGTTCTTTTCGTGTTG ATTTCAAAAAGTAGTGGAATCCATGGTGGTTTCTTTTCCACCATAGTTTATTCCCAGTTGGTTGCTAAAAGTAGTGGAAT CCACCTAGTTATGAAGTTGCTTTGCTTTTGATTAAGTTTTCTAATTCCTCGTTTCTGTTGTTTTGCAGCACCCGTGTGGT TGACCTGATCGTGCATGTTGCAAAATCTCTTTAAGGTGTTGGTGCTGCAAAGTGACCAACTGGCTTAAGTGTGTTTCTTG CAATGTATCTCGTTCAAGTTACGCTTCTTGACCTTGACCGATTGAAATGTCAGTAATAAATTGGTTTCTCGAACTCATGA AGTTGCTCCATGATGAGCGTTAGTTTTTTGGTTGCTTAATACATTGAGGGATCAACTGTTTCAGATTTTTACGTATTTTT GAGTAATCGGCTTTTTGTTAATGTGATAATAGATGGTTTTCATCATTGGTTGCATATGTTGGGAAATGAGCAAATAAAAT TGGTAACTTAATGGTCTCAACAATGTTGGGAAATGAGCAAATAAAATTGTTAACTTAATGGTATCAAATTTTTTGAACGA AGGTTGGATGAAGAATTGATATCTCATGTTGATTTTTATGTGGAAATCCATATTATATGAAGTCGGCAGCTTATATAATG AATGTAGCTTTAACTAACCAGAATTAACTGAAATAATTCGTAGTTGAATGAGAGTAAACAGCTTCTGGGACTTCCTCGTA GTTTAGAGAGATTCCAGAAGTTGAAAAAGATTACTTTGGATGGAAAAATTAAACCCTGATTATTCTTCGGGTAATGAAGC CAATGGTAGATGGTTGTTTGTTTGGATTTATATTTTATTATAAGCACTTTCAATTCAACTTCTTTGGAATAGTTTTTAGT TGTAAGCATTACTAAGGGTTTTCTATGAATTTAATTTTGCTTATTACCTACGTCGGAGTCTAATTCAAGTTGTGACTTAC TGGGAAGAAAAGTGACTTATTGCGGGGTAGTCCAATCAAGCTGTGCTTCATCGGACAGTTAGTTGACACCCTTATTATTC AATTTAATATAAGAGAAAGGAGAGGCCAATATATTTTATAAACTAGATGGGAGGTTAATACAATATCGGTAAAACTTCAT GGGAGGAGATGAGTGCAATTCCCCTTCAATATTCTATAATAAGATTGATGTGTTATTACATATACATATTGAGAATTATC TATGAAAGTTTTATGATAGAGTATTTTATTACATTCGATATGTAATTTGTGGAGCGGGTGTACCTTGTACGTATGGTTGG AAATGAGGATGTTCAGGGGTGAACCTTGGAGAGAAGTAATTTATTTTTTCAATTTGTCATTTGGGTTATATTTGAATGTC TTCTGTTAAACCTATAC
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0223800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGCAAGATCAAGATCGGAATTAACGGATTCGGAAGGATCGGGCGTTTGGTGGCCAGAGTTGCTCTTACCAGAGACGA TGTTGAACTTGTTGCTGTTAACGATCCATTCATCACCACCGATTACATGACATACATGTTTAAGTATGACAGTGTTCACG GTCCATGGAAGCACCACGAGGTCACTGTCAAGGACGCTAACACCCTTCTCTTTGGTGATAAGCCAGTCACTGTATTTGCA AACAGGAACCCAGAGGAGATCCCATGGGGTCAGACCGGAGCTGATATTGTTGTGGAGTCCACTGGAGTTTTCACTGACAA GGACAAGGCTGCTGCCCATTTGAAGGGTGGTGCCAAGAAGGTTATTATCTCTGCCCCCAGCAAAGATGCTCCCATGTTTG TTGTAGGTGTTAACGAGCATGAGTACAAGCCAGAGCTTAACATCATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCC CCCCTTGCCAAGGTTATTAATGACAGATTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTGCCACTCA GAAGACTGTTGATGGGCCATCCGCAAAAGACTGGAGAGGTGGAAGGGCTGCCTCATTCAACATCATTCCCAGCAGCACTG GAGCTGCTAAGGCTGTTGGCAAAGTGCTTCCTGCTTTGAATGGAAAATTGACCGGGATGGCATTCCGTGTTCCTACTGTG GATGTCTCAGTTGTTGACCTCACAGTCAGACTGGAGAAGGCTGCCACCTATGATCAAATTAAAGCTGCTATCAAGGAGGA GTCTGAGGGCAAATTGAAGGGAATCCTCGGTTACACTGAAGATGATGTGGTCTCAACTGACTTCATTGGCGACAACAGGT CAAGTATCTTTGATGCCAAGGCTGGAATTGCTTTGAATGACAACTTTGTCAAGCTTGTCTCGTGGTATGACAACGAGATG GGATACAGCACCCGTGTGGTTGACCTGATCGTGCATGTTGCAAAATCTCTTTAA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0223800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGKIKIGINGFGRIGRLVARVALTRDDVELVAVNDPFITTDYMTYMFKYDSVHGPWKHHEVTVKDANTLLFGDKPVTVFA NRNPEEIPWGQTGADIVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEYKPELNIISNASCTTNCLA PLAKVINDRFGIVEGLMTTVHSITATQKTVDGPSAKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV DVSVVDLTVRLEKAATYDQIKAAIKEESEGKLKGILGYTEDDVVSTDFIGDNRSSIFDAKAGIALNDNFVKLVSWYDNEM GYSTRVVDLIVHVAKSL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10836:SF102
2 336 335 2.5E-220 –
PANTHER
PTHR10836
2 336 335 2.5E-220
IPR020831
PIRSF
PIRSF000149
2 337 336 3.3E-129
IPR020831
SUPERFAMILY
SSF51735
3 170 168 1.31E-65
IPR036291
Pfam
PF00044
4 107 104 2.0E-35
IPR020828
SMART
SM00846
4 154 151 2.2E-92
IPR020828
TIGRFAM
TIGR01534
5 328 324 2.1E-135
IPR006424
Gene3D
G3DSA:3.40.50.720
5 330 326 4.6E-160 –
PRINTS
PR00078
113 126 14 6.2E-50
IPR020831
PRINTS
PR00078
148 166 19 6.2E-50
IPR020831
ProSitePatterns
PS00071
152 159 8 -
IPR020830
SUPERFAMILY
SSF55347
153 316 164 2.14E-81 –
Gene3D
G3DSA:3.30.360.10
153 318 166 4.6E-160 –
Pfam
PF02800
159 316 158 8.3E-72
IPR020829
PRINTS
PR00078
175 191 17 6.2E-50
IPR020831
PRINTS
PR00078
232 249 18 6.2E-50
IPR020831
PRINTS
PR00078
272 287 16 6.2E-50
IPR020831

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006006
Biological process Glucose metabolic process The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides.
Subterm of
GO:0016620
Molecular function Oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces NAD or NADP.
Subterm of
GO:0050661
Molecular function NADP binding Interacting selectively and non-covalently with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP+, or the reduced form, NADPH.
Subterm of
GO:0051287
Molecular function NAD binding Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH.
Subterm of
GO:0055114
Biological process Oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0223800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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