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IPR006424

Description

IPR006424 is a Glyceraldehyde-3-phosphate dehydrogenase, type I.

<p>This group of sequences represent glyceraldehyde-3-phosphate dehydrogenase (GAPDH), the enzyme responsible for the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. Forms exist which utilise NAD ([ec:1.2.1.12]), NADP ([ec:1.2.1.13]) or either ([ec:1.2.1.59]). In some species, NAD- and NADP- utilising forms exist, generally being responsible for reactions in the anabolic and catabolic directions respectively [[cite:PUB00009631]]. An additional form of gap gene is found in gammaproteobacteria and is responsible for the conversion of erythrose-4-phosphate (E4P) to 4-phospho-erythronate in the biosynthesis of pyridoxine [[cite:PUB00002270]]. This pathway of pyridoxine biosynthesis appears to be limited, however, to a relatively small number of bacterial species although it is prevalent among the gammaproteobacteria [[cite:PUB00009725]]. This enzyme is described by [interpro:IPR006422]. These two groups of sequences exhibit a close evolutionary relationship. There exists the possibility that some forms of GAPDH may be bifunctional and act on E4P in species which make pyridoxine and via hydroxythreonine and lack a separate E4PDH enzyme (for instance, the GAPDH from Bacillus stearothermophilus has been shown to possess a limited E4PD activity as well as a robust GAPDH activity [[cite:PUB00009726]]).</p>

This description is obtained from EB-eye REST.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Biological process Glucose metabolic process The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides.
Molecular function Oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces NAD or NADP.
Molecular function NADP binding Interacting selectively and non-covalently with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP+, or the reduced form, NADPH.
Molecular function NAD binding Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH.
Biological process Oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

Associated Lotus transcripts 23

Transcript Name Description Predicted domains Domain count
PREDICTED: glyceraldehyde-3-phosphate dehydrogenase, cytosolic-like [Cicer arietinum] gi|502135422|ref|XP_004502328.1| 19
PREDICTED: glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic-like [Glycine max] gi|356561064|ref|XP_003548805.1| 19
PREDICTED: glyceraldehyde-3-phosphate dehydrogenase, cytosolic-like [Glycine max] gi|356558930|ref|XP_003547755.1| 23
PREDICTED: glyceraldehyde-3-phosphate dehydrogenase, cytosolic-like [Cicer arietinum] gi|502176240|ref|XP_004515830.1| 19
PREDICTED: glyceraldehyde-3-phosphate dehydrogenase, cytosolic-like [Glycine max] gi|356511540|ref|XP_003524483.1| 19
Glyceraldehyde-3-phosphate dehydrogenase; TAIR: AT1G42970.1 glyceraldehyde-3-phosphate dehydrogenase B subunit; Swiss-Prot: sp|P12859|G3PB_PEA Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic; TrEMBL-Plants: tr|I1K7A9|I1K7A9_SOYBN Glyceraldehyde-3-phosphate dehydrogenase; Found in the gene: LotjaGi1g1v0567800 19
Glyceraldehyde-3-phosphate dehydrogenase; TAIR: AT1G42970.1 glyceraldehyde-3-phosphate dehydrogenase B subunit; Swiss-Prot: sp|P25857|G3PB_ARATH Glyceraldehyde-3-phosphate dehydrogenase GAPB, chloroplastic; TrEMBL-Plants: tr|W8SQT6|W8SQT6_9ROSA Glyceraldehyde-3-phosphate dehydrogenase; Found in the gene: LotjaGi1g1v0567800 19
Glyceraldehyde-3-phosphate dehydrogenase; TAIR: AT1G42970.1 glyceraldehyde-3-phosphate dehydrogenase B subunit; Swiss-Prot: sp|P25857|G3PB_ARATH Glyceraldehyde-3-phosphate dehydrogenase GAPB, chloroplastic; TrEMBL-Plants: tr|W8SQT6|W8SQT6_9ROSA Glyceraldehyde-3-phosphate dehydrogenase; Found in the gene: LotjaGi1g1v0567800 19
Glyceraldehyde-3-phosphate dehydrogenase; TAIR: AT1G12900.5 glyceraldehyde 3-phosphate dehydrogenase A subunit 2; Swiss-Prot: sp|P12858|G3PA_PEA Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic; TrEMBL-Plants: tr|I1ML66|I1ML66_SOYBN Glyceraldehyde-3-phosphate dehydrogenase; Found in the gene: LotjaGi1g1v0637100 19
Glyceraldehyde-3-phosphate dehydrogenase; TAIR: AT1G12900.5 glyceraldehyde 3-phosphate dehydrogenase A subunit 2; Swiss-Prot: sp|P12858|G3PA_PEA Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic; TrEMBL-Plants: tr|B9RGT1|B9RGT1_RICCO Glyceraldehyde-3-phosphate dehydrogenase; Found in the gene: LotjaGi1g1v0637100 24
Glyceraldehyde-3-phosphate dehydrogenase; TAIR: AT1G12900.5 glyceraldehyde 3-phosphate dehydrogenase A subunit 2; Swiss-Prot: sp|P12858|G3PA_PEA Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic; TrEMBL-Plants: tr|F8UX79|F8UX79_ARAHY Glyceraldehyde-3-phosphate dehydrogenase; Found in the gene: LotjaGi1g1v0637100 24
Glyceraldehyde-3-phosphate dehydrogenase; TAIR: AT1G13440.1 glyceraldehyde-3-phosphate dehydrogenase C2; Swiss-Prot: sp|Q7FAH2|G3PC2_ORYSJ Glyceraldehyde-3-phosphate dehydrogenase 2, cytosolic; TrEMBL-Plants: tr|I1K135|I1K135_SOYBN Glyceraldehyde-3-phosphate dehydrogenase; Found in the gene: LotjaGi2g1v0082700 19
Glyceraldehyde-3-phosphate dehydrogenase; TAIR: AT1G79530.1 glyceraldehyde-3-phosphate dehydrogenase of plastid 1; Swiss-Prot: sp|Q9SAJ6|G3PP1_ARATH Glyceraldehyde-3-phosphate dehydrogenase GAPCP1, chloroplastic; TrEMBL-Plants: tr|I1MM44|I1MM44_SOYBN Glyceraldehyde-3-phosphate dehydrogenase; Found in the gene: LotjaGi3g1v0133700 23
Glyceraldehyde-3-phosphate dehydrogenase; TAIR: AT1G79530.1 glyceraldehyde-3-phosphate dehydrogenase of plastid 1; Swiss-Prot: sp|Q9SAJ6|G3PP1_ARATH Glyceraldehyde-3-phosphate dehydrogenase GAPCP1, chloroplastic; TrEMBL-Plants: tr|I1MM44|I1MM44_SOYBN Glyceraldehyde-3-phosphate dehydrogenase; Found in the gene: LotjaGi3g1v0133700 19
Glyceraldehyde-3-phosphate dehydrogenase; TAIR: AT1G16300.1 glyceraldehyde-3-phosphate dehydrogenase of plastid 2; Swiss-Prot: sp|Q9SAJ6|G3PP1_ARATH Glyceraldehyde-3-phosphate dehydrogenase GAPCP1, chloroplastic; TrEMBL-Plants: tr|I1MM44|I1MM44_SOYBN Glyceraldehyde-3-phosphate dehydrogenase; Found in the gene: LotjaGi3g1v0133700 19
Glyceraldehyde-3-phosphate dehydrogenase; TAIR: AT1G13440.1 glyceraldehyde-3-phosphate dehydrogenase C2; Swiss-Prot: sp|P34922|G3PC_PEA Glyceraldehyde-3-phosphate dehydrogenase, cytosolic; TrEMBL-Plants: tr|I3SYQ7|I3SYQ7_LOTJA Glyceraldehyde-3-phosphate dehydrogenase; Found in the gene: LotjaGi4g1v0223800 19
Glyceraldehyde-3-phosphate dehydrogenase; TAIR: AT1G13440.1 glyceraldehyde-3-phosphate dehydrogenase C2; Swiss-Prot: sp|P34922|G3PC_PEA Glyceraldehyde-3-phosphate dehydrogenase, cytosolic; TrEMBL-Plants: tr|I3SYQ7|I3SYQ7_LOTJA Glyceraldehyde-3-phosphate dehydrogenase; Found in the gene: LotjaGi4g1v0223800 18
Glyceraldehyde-3-phosphate dehydrogenase; TAIR: AT1G13440.1 glyceraldehyde-3-phosphate dehydrogenase C2; Swiss-Prot: sp|P34922|G3PC_PEA Glyceraldehyde-3-phosphate dehydrogenase, cytosolic; TrEMBL-Plants: tr|I3SYQ7|I3SYQ7_LOTJA Glyceraldehyde-3-phosphate dehydrogenase; Found in the gene: LotjaGi4g1v0223800 18
Glyceraldehyde-3-phosphate dehydrogenase; TAIR: AT1G13440.1 glyceraldehyde-3-phosphate dehydrogenase C2; Swiss-Prot: sp|P34922|G3PC_PEA Glyceraldehyde-3-phosphate dehydrogenase, cytosolic; TrEMBL-Plants: tr|I3SYQ7|I3SYQ7_LOTJA Glyceraldehyde-3-phosphate dehydrogenase; Found in the gene: LotjaGi4g1v0223800 19
Glyceraldehyde-3-phosphate dehydrogenase; TAIR: AT1G13440.1 glyceraldehyde-3-phosphate dehydrogenase C2; Swiss-Prot: sp|Q7FAH2|G3PC2_ORYSJ Glyceraldehyde-3-phosphate dehydrogenase 2, cytosolic; TrEMBL-Plants: tr|V7D036|V7D036_PHAVU Glyceraldehyde-3-phosphate dehydrogenase; Found in the gene: LotjaGi6g1v0100900 19
Glyceraldehyde-3-phosphate dehydrogenase; TAIR: AT1G13440.1 glyceraldehyde-3-phosphate dehydrogenase C2; Swiss-Prot: sp|Q7FAH2|G3PC2_ORYSJ Glyceraldehyde-3-phosphate dehydrogenase 2, cytosolic; TrEMBL-Plants: tr|V7D036|V7D036_PHAVU Glyceraldehyde-3-phosphate dehydrogenase; Found in the gene: LotjaGi6g1v0100900 19
Glyceraldehyde-3-phosphate dehydrogenase; TAIR: AT1G13440.1 glyceraldehyde-3-phosphate dehydrogenase C2; Swiss-Prot: sp|Q7FAH2|G3PC2_ORYSJ Glyceraldehyde-3-phosphate dehydrogenase 2, cytosolic; TrEMBL-Plants: tr|V7D036|V7D036_PHAVU Glyceraldehyde-3-phosphate dehydrogenase; Found in the gene: LotjaGi6g1v0100900 19
Glyceraldehyde-3-phosphate dehydrogenase; TAIR: AT1G13440.1 glyceraldehyde-3-phosphate dehydrogenase C2; Swiss-Prot: sp|Q7FAH2|G3PC2_ORYSJ Glyceraldehyde-3-phosphate dehydrogenase 2, cytosolic; TrEMBL-Plants: tr|V7D036|V7D036_PHAVU Glyceraldehyde-3-phosphate dehydrogenase; Found in the gene: LotjaGi6g1v0100900 19

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
TIGR01534 TIGRFAM 1 4.35