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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0239000 |
| Transcript ID | LotjaGi4g1v0239000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-dependent RNA polymerase; TAIR: AT4G11130.1 RNA-dependent RNA polymerase 2; Swiss-Prot: sp|O82504|RDR2_ARATH RNA-dependent RNA polymerase 2; TrEMBL-Plants: tr|G7JNT8|G7JNT8_MEDTR RNA-dependent RNA polymerase; Found in the gene: LotjaGi4g1v0239000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:55504725..55509820) extracted from Lotus japonicus Gifu genome v1.2.
AAATTTTTTGTGTTGTATTTATAGCTTCTACCAATTGCAGAACTACAATAGAAAGTTCAGGCAGTCAAAACCCTCACTGA ACTGAACACTTCCCTAGCCAGCTCCTCCTCCTCTCCTTGTCAATGGGGGTTCCGACTGGTAAACCCACCGTCCGCATCTT CAACATTCCCCAATCCGCCACCGCCAAGGACCTCCTCGCCTTCCTCAAGTCCACATTTGGTCCCTCCTCCATCTACGCCC TCGAAATCTTTTCCGATTACTCCAACTGGAAGTCTCGCGGCTCCGGCCGCGTCCAGTTCGAGGACCTCGCCACCAAGTCC CGCGCCCTCTCTCTCGCCGAATCCCAGAAGCTCATCTTCAAGTCCCACTTCCTCCGCCTCTCCGAAAACTCCGATGATAT CATCCCCCGGCCTCCGCTCCCCCAACACCGCCTCAACAACACCATCCTCAATGCAGGCTTCACCGTCGGACCTGACGATT TTGTTATTCTCGACACCTGGGATGGTGTTCAGGGGTGGATCATGCCAGAACGGAGGAAACTTGAATTCTGGGTCTGGTTC CAAGGGGAGTGTTACAAGCTTGAAATCCCTTTTGAAGATATTTTGGAGACTGTTGGCTATGCTTCTGGTGATGATGGTAA ACCCCCAGATGCCCTCATCTTGAAGGTAGATATCTCTATATCCTTCCCTTGTTGATTTTGGAATTTTGATTATTTCTTGT TCATGCTGCTTTTCCAATTTAGTTAAGCAATTACTCAATTACTTATGTGAAGTTGTGATTTAAATGGTTCATAATCATAA TCATGCAAGAACGCCCGGTTTGGGAAAATAACTTAATTAAGCACTTATGGTCATAAGGAACCATAAGCGCTTATGCCATA AGCGCTTATTCATAAGCTATTTTAAAAAAATATTAAAATAGATTGAAAATAAGTTATATATAAGCATAAGCTCTTTTTCA TAAGCTATCCTGAGTAGCTTATGAAAATAAGCTCAAAACAACTTATGGTAGACCATAAGCTGTTTGCATAAGCTCTCCCA AACACTTGCACAAGCGCTTATGCTATCAGATAAACTCCAATAAGCTCTCCAAAACGAGGCCTATTTCTAGTTCATGCTGC ATTGGTGCTTTTCCAATTTAGATAAGCAATTAGTCAATTAATGATGTGAAGTTGTGATTTAAATGGTTCATGATCATAAT CACTCAAGATCATTTCTCTTCCTGTACATAATTGTTGAAAAGTTTGTCCAAATTGGCTCTTTTTCTGTCTGAGTTTTGTT ATTGGTGATTTTGTTGTATCTATTTCTCTTATATTATTTATCAATGTTGGTTTCTACATTCTCAGTTGGTTACTTTCTTT GTCTTCCTTTTCAGCTGAAATATGGGCCAAGGATATATCAGAGGAAATCAGGGCCAGATATAGCCTCCAAGTTTAAGGCT GATAGGTACCATTTCTGTAAGGATGATATCGAGTTTCTTTGGGTGCGAACAACAGACTTCTCGCCCATCAAGTCGATTGG GCACTCCACATCGTTTTTTTGGGAAATTGACGAAGAATCATCTTCTTTGGATGTTTTTCAAAGTTTTCCATTGTACAGAG TAAGTCTGAAAGATCTAAATCTGGATCAGAAATATTCATGCTCTGCCACAGAAACAGTTCCGCTGGTGAAATGTGGTCCT GGTTCCAAGCTTCCTTATGAGGATCTTTTCCAATTGAATTGCCTTGTCCATACTCAGAAAATCAGTCTTGCTTCAGTGAA TGATGAATTGATTGCCTTGTTTGGAAGCTTAACTGATGAAACCAAAGCCATGGTTTTTCAGAAATTGCACAAACTGAATT CAACTTGTTATGATCCCTTAGAATTTGTGAACACTCAATTGCACGTGCTGAGCAGCAGAAGAAAAAGGCATCTTCCATCA GCGCAGAAAAGGTTGGCAGATAACAACATAATGAGTTGTCATAGAGCACTGATTACCCCAACGAAGATTTATTGCCTTGG ACCGGAGCTTGAAACCTCAAATCATGTGGTAAAGCATTTTGCACAGTATGCTTCGGATTTCATGAGGATTACTTTTGTTG AAGAGGATTGGAGTAAGCTTCCATCTAATGCGGTATCAACTACTGTACACAAGGGAATCTTCTCAAAGCCTTTTAAAACT GAAATATATAAGCGGATATTGACTATTCTTCGAGATGGGATTGTGATTGGATCAAAAAGATTTGAGTTTCTAGCCTTCTC TGCTAGTCAACTGCGGTCAAATTCCGTTTGGGTATTTGCTTCTAATGACCATGTGAAAGCAGCAGATATCAGAGAATGGA TGGGATGTTTCAACAACATTCGTAGTGTTTCTAAATGTGCAGCAAGGATGGGTCAGCTGTTCAGTTCTTCCAAGCAAACT TTTGAAGTCCTTCCTCAAGAAGTGGAAATAATTCCAGATATTGAAGTGAACTCTGATGGTGTAGACTACTGTTTCTCTGA TGGCATTGGAAAAATTTCCCTATCTTTTGCAAGGCAAGTTGCTCAAAAGTTAAAATTGGATCAGAGTCGAATTCCATCAG CATTTCAAATTCGGTATGGTGGATATAAAGGTGTTATTGCTCTGGATCGCCATTCCTTTAGGAAGTTATCATTGCGCGGC AGTATGCTTAAGTTTGAATCCGACAACAGGATGCTCTGTGTTACTAAATGGAGTGAGTCAATGCCTTGCTTTCTCAATCG AGAGATTATATCCCTGCTGTCGACCTTAGGGGTAAAAGATGAGGCGCTTTTGGCTATGCAACAGGAACAGTTGCATTTGC TTGGAAGGATGTTGACTGATAGGGAGGCAGCACTGGATGTTCTGGAAAGTTTGAGTGGAGTTGATTCAAAAAGCATTCTG GTAAAGATGTTGCATCAGTTTTATGAACCAAACAGTGAGCCTTATCTATCGATGATGCTTAAGGCTCACTATACGGAGCA ATTATCTGATTTGAAAAGTAGATGCCGTATATGTGTTCCCAAGGGTCGACTCTTAGTAGGTTGCTTGGATGAAACTGGTA TTTTAAATTATGGCCAAGTGTTTGTTCGCGTTACTGTAAATAAAACTATGGAAAATTCTGGAGATGATAGCTTAAGGAAA GTGGATGGTGATGATAGCACACGCATAATAGTGGGGAAGGTGATAGTCACCAAAAATCCTTGTCTTCACCCAGGAGACGT CAGAGTCCTTGATGCTATCTACCATGAAGAATTGGAGGAAAATGGTATGAGGGATTGCCTTGTATTTCCGCAAAAAGGAC ATAGGTATGTGTACAATTATTACAACCTCCTTTTACTTGTAATCATTTGTTTTATTCAAGGTAGAATTATTACATATTTT TTACATTTATCCGCTTATTTATGGTGTCATTAGCTTCTATGAACCATTAATCATGTGCTAACATAAGAAGCAGGCATGTC CAGTGGGCCGTGAGATAAAGGGTGGAAGAGGGGTGTCATTAGCTAGGCAATTGCATGCATTTAAAACATCCAACATGTAC TTGCTATATGCTATTTTTTACTTTTGCTAAAACAACCGCTGTTCCTGTTATTTAATGAATTTGATGCCATTACTCATTAG TCATGTTTTGTTGATTACTATCTAATGGTGCCAGTTGGTTTTAGGTTGATACTAGCCTCCCTTAAATTTCTGTCCTGGTG TGTGAAAACTGTTCCTAATATTTATTATTTGGATCTTTTTTTTATTCTAAGTCCAAGCCCAACCTGGATTTTAAGGCAAA TCTAGATTCTAGAAGTAACTTTGTAGTCTGAAGACCTAATTTTTTTCGGGCTGGTAGTGCCGTGGACTTTTATTTATATA AAAGTCAGTATCCTTTTTTTTTATTTATAATGATGCTTATTATGTTCATACTTGCTGCGCCTACAGGCCTCATCCAAATG AATGCTCGGGAGGTGATCTTGATGGAGATTTGTTTTTCATTAGCTGGGACAAAGATCTGATCCCGTGTAAAACCGAGGAA CCAATGGACTACACAGCAAGGAGGCCTCGGATAATGGACCATATGGTAACACTAGAGGTAATGTTCAACAAAGTTACATG GGGTTTTTCCCCTTAAAATTGATAAATGTGAAACTTGCTTCTTATTTGTTGTTACCTGTGTGCTTAGGAAATCCAACAAT TTTTTGTTGACTACATGATCAATGATACTCTGGGCGCTATCTCCACCGCACATCTAGTTCATGCTGACCGTGAACCAGAT AAAGCCAGGAGCTCAAAATGTCTGGAGCTGGCACAGCTTCATTCCATGGCTGTTGACTTTGCAAAGACCGGTGCGCCTGC TGCGATGCCTAGAGTTTTGAAACCAAGAGTTTTTCCAGATTTCATGGAGAGGTTTGAAAAGCCTATGTATATCTCCAACG GGGTGCTGGGAAAACTTTACCGTGCCTTAGTTGAGTCAAAATTGCAGGCAAGTTCTAACGTTGTCTGGTCAGAGAAGCTT GCTGAAGACGCATATGATCTTAATCTTGAAGCTAATGGTTTTGAGGCCTTCCTTGAAACTGCATCAAGTCACAAAGAAAT GTATGCAGAGAAGATGACCGCTTTAATGAAGTTCTATGGTGCAGAGACTGAGGATGAACTGCTAACCGGTAACCTGCAAA ACCGAGCTTCGTATTTGCAGCGTGATAACCGGAGGTATACAGATATGAAGGATCGGATTCTGATCTCGGTGAAGGATCTT CAGCGTGAAGCCAAAGAATGGTTTGAAGCTGATTGTCAACAGCATGAATATCAAGCTATGGCGTCTGCATGGTATCATGT GACCTATCACCCAAAATATTACCATGAAAGCTCCAGTTTCTTGAGCTTTCCGTGGATAGTTGGTGACATTTTGTTGCACA TTAAGTCTGTAAACAGTAAAGTACTCAGTTGATGTCTCTAATTAATGATAGTAAACTCAGTTGTTGGTTAGCTTTTCTTT CTTAATGATTGGCTTAACCACCTGTTAATTCATGAATGTTTTCTCATCCATAATTTATATTATTATGAGGTATATCGATG GCTTACTTGAAATGAATGTTATGATTAGGTTGGCCATCACTAATTTAATATCTGGT
CDS sequence (LotjaGi4g1v0239000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGGTTCCGACTGGTAAACCCACCGTCCGCATCTTCAACATTCCCCAATCCGCCACCGCCAAGGACCTCCTCGCCTT CCTCAAGTCCACATTTGGTCCCTCCTCCATCTACGCCCTCGAAATCTTTTCCGATTACTCCAACTGGAAGTCTCGCGGCT CCGGCCGCGTCCAGTTCGAGGACCTCGCCACCAAGTCCCGCGCCCTCTCTCTCGCCGAATCCCAGAAGCTCATCTTCAAG TCCCACTTCCTCCGCCTCTCCGAAAACTCCGATGATATCATCCCCCGGCCTCCGCTCCCCCAACACCGCCTCAACAACAC CATCCTCAATGCAGGCTTCACCGTCGGACCTGACGATTTTGTTATTCTCGACACCTGGGATGGTGTTCAGGGGTGGATCA TGCCAGAACGGAGGAAACTTGAATTCTGGGTCTGGTTCCAAGGGGAGTGTTACAAGCTTGAAATCCCTTTTGAAGATATT TTGGAGACTGTTGGCTATGCTTCTGGTGATGATGGTAAACCCCCAGATGCCCTCATCTTGAAGCTGAAATATGGGCCAAG GATATATCAGAGGAAATCAGGGCCAGATATAGCCTCCAAGTTTAAGGCTGATAGGTACCATTTCTGTAAGGATGATATCG AGTTTCTTTGGGTGCGAACAACAGACTTCTCGCCCATCAAGTCGATTGGGCACTCCACATCGTTTTTTTGGGAAATTGAC GAAGAATCATCTTCTTTGGATGTTTTTCAAAGTTTTCCATTGTACAGAGTAAGTCTGAAAGATCTAAATCTGGATCAGAA ATATTCATGCTCTGCCACAGAAACAGTTCCGCTGGTGAAATGTGGTCCTGGTTCCAAGCTTCCTTATGAGGATCTTTTCC AATTGAATTGCCTTGTCCATACTCAGAAAATCAGTCTTGCTTCAGTGAATGATGAATTGATTGCCTTGTTTGGAAGCTTA ACTGATGAAACCAAAGCCATGGTTTTTCAGAAATTGCACAAACTGAATTCAACTTGTTATGATCCCTTAGAATTTGTGAA CACTCAATTGCACGTGCTGAGCAGCAGAAGAAAAAGGCATCTTCCATCAGCGCAGAAAAGGTTGGCAGATAACAACATAA TGAGTTGTCATAGAGCACTGATTACCCCAACGAAGATTTATTGCCTTGGACCGGAGCTTGAAACCTCAAATCATGTGGTA AAGCATTTTGCACAGTATGCTTCGGATTTCATGAGGATTACTTTTGTTGAAGAGGATTGGAGTAAGCTTCCATCTAATGC GGTATCAACTACTGTACACAAGGGAATCTTCTCAAAGCCTTTTAAAACTGAAATATATAAGCGGATATTGACTATTCTTC GAGATGGGATTGTGATTGGATCAAAAAGATTTGAGTTTCTAGCCTTCTCTGCTAGTCAACTGCGGTCAAATTCCGTTTGG GTATTTGCTTCTAATGACCATGTGAAAGCAGCAGATATCAGAGAATGGATGGGATGTTTCAACAACATTCGTAGTGTTTC TAAATGTGCAGCAAGGATGGGTCAGCTGTTCAGTTCTTCCAAGCAAACTTTTGAAGTCCTTCCTCAAGAAGTGGAAATAA TTCCAGATATTGAAGTGAACTCTGATGGTGTAGACTACTGTTTCTCTGATGGCATTGGAAAAATTTCCCTATCTTTTGCA AGGCAAGTTGCTCAAAAGTTAAAATTGGATCAGAGTCGAATTCCATCAGCATTTCAAATTCGGTATGGTGGATATAAAGG TGTTATTGCTCTGGATCGCCATTCCTTTAGGAAGTTATCATTGCGCGGCAGTATGCTTAAGTTTGAATCCGACAACAGGA TGCTCTGTGTTACTAAATGGAGTGAGTCAATGCCTTGCTTTCTCAATCGAGAGATTATATCCCTGCTGTCGACCTTAGGG GTAAAAGATGAGGCGCTTTTGGCTATGCAACAGGAACAGTTGCATTTGCTTGGAAGGATGTTGACTGATAGGGAGGCAGC ACTGGATGTTCTGGAAAGTTTGAGTGGAGTTGATTCAAAAAGCATTCTGGTAAAGATGTTGCATCAGTTTTATGAACCAA ACAGTGAGCCTTATCTATCGATGATGCTTAAGGCTCACTATACGGAGCAATTATCTGATTTGAAAAGTAGATGCCGTATA TGTGTTCCCAAGGGTCGACTCTTAGTAGGTTGCTTGGATGAAACTGGTATTTTAAATTATGGCCAAGTGTTTGTTCGCGT TACTGTAAATAAAACTATGGAAAATTCTGGAGATGATAGCTTAAGGAAAGTGGATGGTGATGATAGCACACGCATAATAG TGGGGAAGGTGATAGTCACCAAAAATCCTTGTCTTCACCCAGGAGACGTCAGAGTCCTTGATGCTATCTACCATGAAGAA TTGGAGGAAAATGGTATGAGGGATTGCCTTGTATTTCCGCAAAAAGGACATAGGCCTCATCCAAATGAATGCTCGGGAGG TGATCTTGATGGAGATTTGTTTTTCATTAGCTGGGACAAAGATCTGATCCCGTGTAAAACCGAGGAACCAATGGACTACA CAGCAAGGAGGCCTCGGATAATGGACCATATGGTAACACTAGAGGAAATCCAACAATTTTTTGTTGACTACATGATCAAT GATACTCTGGGCGCTATCTCCACCGCACATCTAGTTCATGCTGACCGTGAACCAGATAAAGCCAGGAGCTCAAAATGTCT GGAGCTGGCACAGCTTCATTCCATGGCTGTTGACTTTGCAAAGACCGGTGCGCCTGCTGCGATGCCTAGAGTTTTGAAAC CAAGAGTTTTTCCAGATTTCATGGAGAGGTTTGAAAAGCCTATGTATATCTCCAACGGGGTGCTGGGAAAACTTTACCGT GCCTTAGTTGAGTCAAAATTGCAGGCAAGTTCTAACGTTGTCTGGTCAGAGAAGCTTGCTGAAGACGCATATGATCTTAA TCTTGAAGCTAATGGTTTTGAGGCCTTCCTTGAAACTGCATCAAGTCACAAAGAAATGTATGCAGAGAAGATGACCGCTT TAATGAAGTTCTATGGTGCAGAGACTGAGGATGAACTGCTAACCGGTAACCTGCAAAACCGAGCTTCGTATTTGCAGCGT GATAACCGGAGGTATACAGATATGAAGGATCGGATTCTGATCTCGGTGAAGGATCTTCAGCGTGAAGCCAAAGAATGGTT TGAAGCTGATTGTCAACAGCATGAATATCAAGCTATGGCGTCTGCATGGTATCATGTGACCTATCACCCAAAATATTACC ATGAAAGCTCCAGTTTCTTGAGCTTTCCGTGGATAGTTGGTGACATTTTGTTGCACATTAAGTCTGTAAACAGTAAAGTA CTCAGTTGA
Protein sequence (LotjaGi4g1v0239000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGVPTGKPTVRIFNIPQSATAKDLLAFLKSTFGPSSIYALEIFSDYSNWKSRGSGRVQFEDLATKSRALSLAESQKLIFK SHFLRLSENSDDIIPRPPLPQHRLNNTILNAGFTVGPDDFVILDTWDGVQGWIMPERRKLEFWVWFQGECYKLEIPFEDI LETVGYASGDDGKPPDALILKLKYGPRIYQRKSGPDIASKFKADRYHFCKDDIEFLWVRTTDFSPIKSIGHSTSFFWEID EESSSLDVFQSFPLYRVSLKDLNLDQKYSCSATETVPLVKCGPGSKLPYEDLFQLNCLVHTQKISLASVNDELIALFGSL TDETKAMVFQKLHKLNSTCYDPLEFVNTQLHVLSSRRKRHLPSAQKRLADNNIMSCHRALITPTKIYCLGPELETSNHVV KHFAQYASDFMRITFVEEDWSKLPSNAVSTTVHKGIFSKPFKTEIYKRILTILRDGIVIGSKRFEFLAFSASQLRSNSVW VFASNDHVKAADIREWMGCFNNIRSVSKCAARMGQLFSSSKQTFEVLPQEVEIIPDIEVNSDGVDYCFSDGIGKISLSFA RQVAQKLKLDQSRIPSAFQIRYGGYKGVIALDRHSFRKLSLRGSMLKFESDNRMLCVTKWSESMPCFLNREIISLLSTLG VKDEALLAMQQEQLHLLGRMLTDREAALDVLESLSGVDSKSILVKMLHQFYEPNSEPYLSMMLKAHYTEQLSDLKSRCRI CVPKGRLLVGCLDETGILNYGQVFVRVTVNKTMENSGDDSLRKVDGDDSTRIIVGKVIVTKNPCLHPGDVRVLDAIYHEE LEENGMRDCLVFPQKGHRPHPNECSGGDLDGDLFFISWDKDLIPCKTEEPMDYTARRPRIMDHMVTLEEIQQFFVDYMIN DTLGAISTAHLVHADREPDKARSSKCLELAQLHSMAVDFAKTGAPAAMPRVLKPRVFPDFMERFEKPMYISNGVLGKLYR ALVESKLQASSNVVWSEKLAEDAYDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQR DNRRYTDMKDRILISVKDLQREAKEWFEADCQQHEYQAMASAWYHVTYHPKYYHESSSFLSFPWIVGDILLHIKSVNSKV LS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 7 | 1119 | 1113 | 0.0 | – | |
| PANTHER | 7 | 1119 | 1113 | 0.0 | ||
| SUPERFAMILY | 7 | 74 | 68 | 3.12E-6 | ||
| ProSiteProfiles | 8 | 91 | 84 | 8.774 | ||
| ProSiteProfiles | 123 | 183 | 61 | 9.355 | – | |
| Pfam | 381 | 961 | 581 | 1.8E-179 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA-directed 5'-3' RNA polymerase activity | Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1); uses an RNA template, i.e. the catalysis of RNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. |
Expression pattern of LotjaGi4g1v0239000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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