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PF05183

Source: Pfam

Description

RNA dependent RNA polymerase

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003968
Molecular function RNA-directed 5'-3' RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1); uses an RNA template, i.e. the catalysis of RNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time.
Subterm of

Associated Lotus transcripts 16

Transcript Name Description Predicted domains Domain count
Lj0g3v0080799.1
– PREDICTED: RNA-dependent RNA polymerase 1-like [Glycine max] gi|356519367|ref|XP_003528344.1|
Domains
4
Lj0g3v0136629.1
– PREDICTED: RNA-dependent RNA polymerase 6-like [Glycine max] gi|356507732|ref|XP_003522618.1|
Domains
4
Lj1g3v1911730.1
– PREDICTED: RNA-dependent RNA polymerase 6-like [Glycine max] gi|356515444|ref|XP_003526410.1|
Domains
8
Lj2g3v0855300.1
– PREDICTED: probable RNA-dependent RNA polymerase 5-like [Cicer arietinum] gi|502164066|ref|XP_004513037.1|
Domains
5
Lj2g3v0855300.2
– PREDICTED: probable RNA-dependent RNA polymerase 5-like [Cicer arietinum] gi|502164066|ref|XP_004513037.1|
Domains
5
Lj2g3v0855300.3
– PREDICTED: probable RNA-dependent RNA polymerase 5-like [Cicer arietinum] gi|502164066|ref|XP_004513037.1|
Domains
4
Lj2g3v1069050.1
– PREDICTED: RNA-dependent RNA polymerase 1-like [Glycine max] gi|356499585|ref|XP_003518619.1|
Domains
7
Lj4g3v1535110.1
– PREDICTED: RNA-dependent RNA polymerase 2-like [Cicer arietinum] gi|502152277|ref|XP_004508850.1|
Domains
11
LotjaGi1g1v0384200.1
– RNA-dependent RNA polymerase; TAIR: AT3G49500.1 RNA-dependent RNA polymerase 6; Swiss-Prot: sp|Q9SG02|RDR6_ARATH RNA-dependent RNA polymerase 6; TrEMBL-Plants: tr|T1YXS9|T1YXS9_LOTJA RNA-dependent RNA polymerase; Found in the gene: LotjaGi1g1v0384200
Domains
7
LotjaGi1g1v0384200.2
– RNA-dependent RNA polymerase; TAIR: AT3G49500.1 RNA-dependent RNA polymerase 6; Swiss-Prot: sp|Q9SG02|RDR6_ARATH RNA-dependent RNA polymerase 6; TrEMBL-Plants: tr|T1YXS9|T1YXS9_LOTJA RNA-dependent RNA polymerase; Found in the gene: LotjaGi1g1v0384200
Domains
7
LotjaGi2g1v0000800.1
– RNA-dependent RNA polymerase; TAIR: AT1G14790.1 RNA-dependent RNA polymerase 1; Swiss-Prot: sp|Q9LQV2|RDR1_ARATH RNA-dependent RNA polymerase 1; TrEMBL-Plants: tr|A0A151S591|A0A151S591_CAJCA RNA-dependent RNA polymerase; Found in the gene: LotjaGi2g1v0000800
Domains
8
LotjaGi2g1v0001000.1
– RNA-dependent RNA polymerase; TAIR: AT1G14790.1 RNA-dependent RNA polymerase 1; Swiss-Prot: sp|Q9LQV2|RDR1_ARATH RNA-dependent RNA polymerase 1; TrEMBL-Plants: tr|K7K760|K7K760_SOYBN RNA-dependent RNA polymerase; Found in the gene: LotjaGi2g1v0001000
Domains
7
LotjaGi2g1v0001000.2
– RNA-dependent RNA polymerase; TAIR: AT1G14790.1 RNA-dependent RNA polymerase 1; Swiss-Prot: sp|Q9LQV2|RDR1_ARATH RNA-dependent RNA polymerase 1; TrEMBL-Plants: tr|K7K760|K7K760_SOYBN RNA-dependent RNA polymerase; Found in the gene: LotjaGi2g1v0001000
Domains
7
LotjaGi2g1v0223900.1
– RNA-dependent RNA polymerase; TAIR: AT2G19930.3 RNA-dependent RNA polymerase family protein; Swiss-Prot: sp|O82188|RDR5_ARATH Probable RNA-dependent RNA polymerase 5; TrEMBL-Plants: tr|A0A151R3T9|A0A151R3T9_CAJCA RNA-dependent RNA polymerase; Found in the gene: LotjaGi2g1v0223900
Domains
5
LotjaGi4g1v0239000.1
– RNA-dependent RNA polymerase; TAIR: AT4G11130.1 RNA-dependent RNA polymerase 2; Swiss-Prot: sp|O82504|RDR2_ARATH RNA-dependent RNA polymerase 2; TrEMBL-Plants: tr|G7JNT8|G7JNT8_MEDTR RNA-dependent RNA polymerase; Found in the gene: LotjaGi4g1v0239000
Domains
9
LotjaGi4g1v0239000.2
– RNA-dependent RNA polymerase; TAIR: AT4G11130.1 RNA-dependent RNA polymerase 2; Swiss-Prot: sp|O82504|RDR2_ARATH RNA-dependent RNA polymerase 2; TrEMBL-Plants: tr|G7JNT8|G7JNT8_MEDTR RNA-dependent RNA polymerase; Found in the gene: LotjaGi4g1v0239000
Domains
4

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
PTHR23079:SF5 PANTHER 1 6.25