Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi4g1v0254100 |
Transcript ID | LotjaGi4g1v0254100.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Transmembrane protein adipocyte-associated 1; TAIR: AT3G05010.1 Protein of unknown function, transmembrane-40; Swiss-Prot: sp|Q5ZII3|TPRA1_CHICK Transmembrane protein adipocyte-associated 1 homolog; TrEMBL-Plants: tr|I3T2L6|I3T2L6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0254100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:60830191..60836070) extracted from Lotus japonicus Gifu genome v1.2.
ATTCCATTAGTTACTTAGTCCGACCTTGAATAAAAACAAAAACAGTAATCAACTATTATTAAATGGAAAGTTTGTGTTTC CTCCCTAATCCTAATTAGTGTTGCTGACAGAAGCTTTGGTCGTTCCATGATCTACCATTCAACCCAACCAATTCCACGAT CTAGTTGAACACAACTCCACTCCACTTTCTCAACAACCAAACAAACAATGTTTTCTTGTGAATCAATCACACTCTGTGAA TCAGGGACGTAACAACAACGAAACTAAACCATGTCAAGGAGCGTGGAAGAGGAGATCAAGATCAACAGCGATGTGGTTGA TCTGAACTGCAACGGATACGACACCTTCCTTGTCGTTTCGTCGGTTCTGTTCATCGTGTATCTGGTGGTGCGCGCCAAGA AGAACTTCAGGAGGCTCTTTCATGGTGGCTCATACATTTTGATTTCCTATTATGCCCTCCTCTGGCTTGTTACCCTTTTG AACCTCGCTTGGTCTTTTCTTCAGGTACATACATGCCCATCAATCATATCTTCCCTTTCTTTGCGAAATTTCGGAACTTG TTGTGATTCTCTTGAAATTTCAGTGGTTTTGGTGCAGAATTTGCATCTGGGTCTTTCCCGATTTCTTTGCATTTTTTTGT CACAGTTTTTTATGATTGGCTGTATGTTTTTTACATTGTCAAGTAGGGTGAGTGTTGCAAGGAATGAAGTGTGAGTGTGA GAGTATTGTTCCTACAAGGAATTGTTAATTAGGTAGTAATGTACTTGGTAAGGTAAATCAATATTTGGACTAGTTCATTT TGGTTGAAGAGAGTGCTAAAAGATATCTAGATGACATGCAGAAAGAGTTAAATATTTTTTTGAAGTTTCAAATGTATACA ATGCAGCAATGCTTTACAATGCACAGGAAATAATGATAGAGGGGTTAGGGTCTGATTTCACCTTATTTTCCCTTAATGCA TTTATTGAACCCAAACCAAGTTCTTAGTCAGAAATCAACTCAGTTAGATAATTAAGTTCATTTCCTTGGTACCGCAATCC TTTATTCCTGACCTTAGTTGACTAATTCCTTAGATTGGCTTATTTGGCAATAATCAATCGAAGCAAGGGAATTTACGCAA GATCACATTTATTTACACCGACGTCTTTTCATAGATCATCAACTTATGTGGTGATTACTTCAAGACCTCCCGTACACTAA TTTTTCGATTGGATATATGGACATATCATTATCTTGTGGTGGACCAAGGCATGTAAAGCGTTACGAACAGAAGGAATCAC TTGATCAAGGACAAAGAGCTTGACTAAAAGCATCGAATCTGAGGTGCAATTGAGTTTAAATTTGGATCCATCCTTCCCTA GCCTAAAGAATATGTTTTCACATGATAATAGAAGCAAAAGAGCAAAGAGACGGAGAAAACTCTTCTAGATCCATAGAGTA GAAGCTAGATCGGAGCTTCCACATTCAAGGCTTGTATTCCTTTGAAAAGCAGTTTCAAAGACGCATGCTTCATGATCCCT CTCTCTGCCAAAAGATTTCTCTAACTTTTATAATTTTTATACTGTTAAAAATAATTTTCAGCACTGACCATGGAGTGCTA GATTCTTGGTGTTGGGCCCCATCAAGGCTGATAAGCTTTCTTACCTCTTCCCATTGGCCTGAGCACTGTAGGTCCAGAGC TTAGTGTTGGCTATGCAGCGCTTCATCTGGTGCTCTTTTTGTGAAAGAAAGCATGAATTCAAGAGCTATACAATGATTAC ATTGCTTGATAATTCTTGACACAATAACATGTCGTAGCTTGGCCCTTTTTCAACGAATTAAACCATATTGCTCAAGAATC CCTATGTAAAATCAGAGATTATCTTTAACCTTTCAACTTCGGCTTCTTTTTTGCTTAAACAGACATGGCAGTGTTCTCCC GGAAAGCAGGTTGCATGGAATCTCCTGTCATTGTTTACGACATCTGGTATGCTATGTCTAGAGATAAGCTTGATGGCTTT CTTACTAAAGGATAACTACATGAATGCCATGGAAGCTCTAGCACACACTTTCATTGTATCAGGAATTATTGTCTTTGTGG ATATCCTTCTTAAGGTGAGACTGGTTTACATTCATTTAAGTTATATACATGCATGTGTATGCATATTTACTTGTTTTATA AAATATAAGTGAATTTTTATGCCCCTGTTTGGTGTCTAAATTTATTTAGTCTTTCTCGGTTTCATATAATTTTCCTCTGT CCAGGCATTTAATTTTCTCCGCACCAGTTACCTGTTTTCAAAACCATAGTCTTAAGCTTCATCTAGTTGCAATATATCTG CTTAGAAAACCATAGACCTTTGTATTAGCAATATGCAAAGAAGAAAAGTAGTCAGTTGGCTAATGAATCGTCATTGGTTT ATATCAGCAACGCTGATCAGTAGTTTGATTGCAACCTGATTTGAAGCAGCATCATAGAGTTCCATGAAAACAATTCTTTA GAACGCTTTACAGCTTCTATGATACTAGAGAAAATGTGTTTGACTTGACAAGCGAACTTGTTTTGGTAGTGATTCTATGG TAATGGTAACTGTCCATAAGTTCATGTTAGAGTCCTCTGTGAATGTCCATGGTCAAGTTTTCAAAAGGCCATAATGAATA ATTGCAACCTCATTTTTGCAATCTTTATGAGTTTTTTGGTTTTTGCTATATGATTTTTGAACTCAACTCTATCATTCAGT AAAAAAATCACTGTCAGTTTTCAATGAATACTAGGACCTAGATGTATCTTACCTGGTCTGACAGATATAGCGTATGTTTT GTGATGAAATACTGGTGTGTAGTATGTTTTAAGATTGTAATACATTACTGGGTTTTAATCACATGCTTTATCAAATTTAA TCTTTTATTGAGTTGGAACAGGTTTCCAGATTACTACAAAGAATTGGCTTCAGTTACATCTTATGATTGGGGGGGGGGGG AGACGGGTATCTCATGAATGTTAAGAATATGAAAAATGTTTTAGCTCAAGAAACGGCTGTGCATCTGAAAAATATTGTGC TGGGGAGATCCAAACATGGTATTGTAATAAATGAGGAAATATAAATCCTTGGATTAGAACCACAAATACATATTGCGCAT AGGGGTGGAAATAGGTCAGGCGGCTCGTCAGGGGCCTATGGCTTGGCTCGTTAGAGGCTCGGCTCAGCTCTGCTCGTTTA TTAAAAAGGCCAGGCTTAGGCTTAGGCTTTTTTAAAAGCTTGTTTAACTAAAAAGGGCAGGCCCAAACTATTAAAAAAGC CTATTTGGCCTAACAGGCCAGCCTATTTATATATTATTTTTATTAATAATATAAATAAATATAATATAATAATATATTAT TTGATTTTTTAAAACTGATGTATAGTTTAGTATAAAAGAAAACCCCAAGTCCCTACCCTAACCTAGATTAGAAACGTTCC AGACATATTCAATGATACAGATTTAGTTTTTGAAATGCAATGATACAGGTTTTTTTATTTGAAAAGAAAATGCAATGATA TATAAAAGGCTTATTAGCCCGCCAGCCTATTCTTTTGATAAAATTGTCTGTTAAATAGGCTTTTAAGCAGGCTTGTAGGC CAGGCCAGGCCTTAGAAAAAGCCAGGCCAAACCACAAAATTTGGCCTATTGATAGGCCACAGGCCAGGCTTGGGCCACGA AAAGATAATGCAGGCCAGGCCTAGGCCACGCAAAGCTTGGCTCGGCTCGGCCTATTTCCACCCCTAATATTATTTGTGCA CATACATGATGAAAGTGTTCATGATGTAATACCTCATTGTTGCTTTGAATACCTTAAACTGCAACATAAACTTCACCCCT ACCCCCCTTCCTTAGGAGATGTAGGAACTAGGAAGAAATGTTACTATTATGTTGGGGTTAGCATATTAAAGTTTGATAAC TTGACTTAGTCATTGAATCAAGCTCTATTTAAATGGCAGTTCTTTGTTTTTCTCTCAGTTATTTTGATGATTGCTTATCC CTGACATGTAATTTTTCGTCTCTCTTCAATATGAATTATTTTTATTTCCTAAAAATAATAATAATAAAAAATAAATAATG GTAATGATAATAATAGTGGAAGTCACACAACTTGCAATTATTTTCCTTTCATGGCTATTTCTCCTTGCATATGAAGCACA ATGTTTACATCCCGTCAGCTTATGCCTGTTCGTTTCATATTTACTCCTTGAATGCTACCAACACGATCTTTTAAACACTA TCCAACACATTTCATGTGATTGGTTTATTTTTCAAAAAGTCAACACATTTGCCTCAATTAAAAAAATGTGTAGACTTTAC AAAAAATATACTAATCACGTGGAGTGTGTAGGAGAGAATTTTAAAAAAGTGTGTTGTTACTTGTTAGCATTTTTCTTACT CCTCATGTATGGTTTCTTGACTCCCCTTGTGCTAATTAAGTACTTCCTTATCAGGCAATCTATGTTTTTGGATTTGGGGT CCCATTGTTCAATAATGATGTTGGAAGCACTGATACAATCAAGTGGTGCTTGTGGATAGTACATAAATTATTGCTCGCTG CAGCATATGGCTTCATTTTATTTGTACACTTCTCTAAATGGAGAGAAAAGCTGCCTCGTGAGTATAATGTCTTATTCAGT TGTCTGTTATAATCTAAACGGATTCATGTACCAACTTGAAATTTTGTGTCGCCTTTGCAGCGAGGCCAGCTTTTTACAAC TACGTTGTTGTGATGTTTGTCTTCAGTGCTGTTACTCTGTTTGCTTGTGGGCTATCAGGAATTGGCGCTGGCCTTGGCAG TTGGTAAGCCTATATCTTTTTTGTAACTAGAAGGTGTACTCAGTTATTATCTCTAAATGATGGATTTTATGTTTATTTGC AGGTTGTATAATCTTACTGTGCTTTGTTATCACTCATTATATCTTCCATTTCTGTATGTAACTTTTCTAGCAGATTTTTT CCAGGCAAGCACTCTAAGATATTCACTGTTTCTTTTTGGTTTTCTATAATATGTGCATGAACATTATATTATGTGTTTGC ACTTGGTGCAGGAGGAAGATTTCCTTTTGGATAACGCATATTACTCTGAAATGAAAGATGCTGGATTCTTTGATGCTGAG TGGGAATAATTCCTCAGCAACTTCTAAATGGAAGGAAGCAAAATCATCTTTTGTTCTCTGCACTGTAAATATTTAGACTC TCTAACTAAAAGTCAAGTGAAGCTCTGCTCCATCAACTTCTTAATGATATGTTGAATCTGTATGACACTATGACCCTACA TCCTCCTTTGTAATGTTGCTAAAGGAATAGTGCTTTCGAACTCCATCATATTTCTATCATCCAAGAATACAGGAAACAAG AAACCAACTGGTGCTTGAAAATCAAAATCAGCCTCAAAATCCAAACTAGCATTGATATTTGCCAGGCTTCAAATTCATAA GTATCTATTCAAAATACAAACTGAAAATTAAAGTTCTTGAACATCTACTCCACTATCTCCCTATTCAAGACTGACATGAT AAGCAATTACATGTTCAAGGCACACAATGAGCACTGCATTTTATAACATGCACCTCCTGACCTGATGGATTACTTGCTAT GCAAGACCTTCAATTTTGGAGAATGTTATCCGTCTTAGAATTCAGATTAGATCTAACTCCACCTTAAAAGCTAGGTCATG GAGATGATTTCTATCTTATGTAAAGATTATTTAGATCATATTTCTAGTCAATTCAGGACCTTTTACACTCGGCATGAGAG GGATCTCTTTTGACTTTGATGATTTAATCTAATAATGTAAATTATTTGATATAGGCTGGTGAATTATTCTTTAGATTTTT TTGCATTAAAAAGCTGTTTCTGAATAAGATTCTTTCTAGG
CDS sequence (LotjaGi4g1v0254100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAAGGAGCGTGGAAGAGGAGATCAAGATCAACAGCGATGTGGTTGATCTGAACTGCAACGGATACGACACCTTCCT TGTCGTTTCGTCGGTTCTGTTCATCGTGTATCTGGTGGTGCGCGCCAAGAAGAACTTCAGGAGGCTCTTTCATGGTGGCT CATACATTTTGATTTCCTATTATGCCCTCCTCTGGCTTGTTACCCTTTTGAACCTCGCTTGGTCTTTTCTTCAGACATGG CAGTGTTCTCCCGGAAAGCAGGTTGCATGGAATCTCCTGTCATTGTTTACGACATCTGGTATGCTATGTCTAGAGATAAG CTTGATGGCTTTCTTACTAAAGGATAACTACATGAATGCCATGGAAGCTCTAGCACACACTTTCATTGTATCAGGAATTA TTGTCTTTGTGGATATCCTTCTTAAGGCAATCTATGTTTTTGGATTTGGGGTCCCATTGTTCAATAATGATGTTGGAAGC ACTGATACAATCAAGTGGTGCTTGTGGATAGTACATAAATTATTGCTCGCTGCAGCATATGGCTTCATTTTATTTGTACA CTTCTCTAAATGGAGAGAAAAGCTGCCTCCGAGGCCAGCTTTTTACAACTACGTTGTTGTGATGTTTGTCTTCAGTGCTG TTACTCTGTTTGCTTGTGGGCTATCAGGAATTGGCGCTGGCCTTGGCAGTTGGTTGTATAATCTTACTGTGCTTTGTTAT CACTCATTATATCTTCCATTTCTGTATGTAACTTTTCTAGCAGATTTTTTCCAGGAGGAAGATTTCCTTTTGGATAACGC ATATTACTCTGAAATGAAAGATGCTGGATTCTTTGATGCTGAGTGGGAATAA
Protein sequence (LotjaGi4g1v0254100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSRSVEEEIKINSDVVDLNCNGYDTFLVVSSVLFIVYLVVRAKKNFRRLFHGGSYILISYYALLWLVTLLNLAWSFLQTW QCSPGKQVAWNLLSLFTTSGMLCLEISLMAFLLKDNYMNAMEALAHTFIVSGIIVFVDILLKAIYVFGFGVPLFNNDVGS TDTIKWCLWIVHKLLLAAAYGFILFVHFSKWREKLPPRPAFYNYVVVMFVFSAVTLFACGLSGIGAGLGSWLYNLTVLCY HSLYLPFLYVTFLADFFQEEDFLLDNAYYSEMKDAGFFDAEWE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 21 | 21 | - | – | |
PANTHER | 7 | 283 | 277 | 8.6E-157 | ||
PANTHER | 7 | 283 | 277 | 8.6E-157 | – | |
TMHMM | 21 | 40 | 20 | - | – | |
Phobius | 22 | 40 | 19 | - | – | |
Pfam | 23 | 270 | 248 | 1.2E-93 | ||
Phobius | 41 | 51 | 11 | - | – | |
Phobius | 52 | 77 | 26 | - | – | |
TMHMM | 55 | 77 | 23 | - | – | |
Phobius | 78 | 88 | 11 | - | – | |
Phobius | 89 | 113 | 25 | - | – | |
TMHMM | 90 | 112 | 23 | - | – | |
Phobius | 114 | 124 | 11 | - | – | |
Phobius | 125 | 148 | 24 | - | – | |
TMHMM | 132 | 154 | 23 | - | – | |
Phobius | 149 | 167 | 19 | - | – | |
TMHMM | 167 | 189 | 23 | - | – | |
Phobius | 168 | 189 | 22 | - | – | |
Phobius | 190 | 200 | 11 | - | – | |
Phobius | 201 | 225 | 25 | - | – | |
TMHMM | 204 | 226 | 23 | - | – | |
Phobius | 226 | 230 | 5 | - | – | |
TMHMM | 231 | 253 | 23 | - | – | |
Phobius | 231 | 254 | 24 | - | – | |
Phobius | 255 | 283 | 29 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0254100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…