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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0309500 |
| Transcript ID | LotjaGi4g1v0309500.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger CCCH domain protein; TAIR: AT5G56900.1 CwfJ-like family protein / zinc finger (CCCH-type) family protein; Swiss-Prot: sp|Q69NK8|C3H59_ORYSJ Zinc finger CCCH domain-containing protein 59; TrEMBL-Plants: tr|A0A151SRU7|A0A151SRU7_CAJCA Zinc finger CCCH domain-containing protein 64; Found in the gene: LotjaGi4g1v0309500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:68552617..68557269) extracted from Lotus japonicus Gifu genome v1.2.
ACTAACGAATGGCCTAGCGGGGTTACTAATCGAGCAGCTGCTTCAGACATTCCTGCTGGACTCTCAGATTCTATAGGCAG TGATCCGACCATATCAGAGTTAGTAGAAGAGATTAAACCACGGTAATTGTTTGTTAGATAGATAGATCGCAGTTCATTCC TATATTTTCCTTTGCATGTTCTTTCACCATAGTTAATTAGGAACCTCCAAGATTCAGTGCCTACATTGTTTTTTCCCTTA AATTCAATTTTAATCTCCAAAATGCATTGCAAAAACTCCAATTGCTAATCACCACCAGTTTTATGATGTCATTTTAATTT GCTTATATGGAATATGTATGTTTATGGAGTATGTAAGCGGGCGGGGTTTGGCAGATGTATTTTGGTCTTAATTGTTTGAG TATGCTCCTGTGGTCTGTAGTAGTCATTAGGAGTACATATCGATTATATGATTAGGAGAGGCTATGCAGATTGAGAATGA AGGATGTGTTGCTGAACAATAATTGGGTCAGGTGCCACCAAACAAGGGCCAAAAGGAATAAGCTCAAGCCCAAGTGGCTG AGAGATTACACAGTTTGTGTGTCACCTATATGGTTTCATTGTATTGTCTTAATTATTCATTTCCTGTGTTGTAATTCTGT TAGTTTTTGTTTATATATAGGAATAAGATTGAAATTCCTTAGATTGAAATGTGAGGAAAAGGGGATCCGGTGAATAAGAG TTAACCTCCTCTAAGCAATATCTTCATGATATCCACAGTCCACACCAAGTTTTATAATTTTATTTTTCTGGTTCACTAGA TCAGAATTAGTCTCTTATGTTTCTACAGGAATTTGGAATGCCAAATGTACCTTCTATGTGGCCTTCATAAATGCAGGCCT GATCCTCGCATTTTTGCCTTATGATTTTCTTTTGGTAGCTATCACATTGTAGGTACTAAAGGTATATACTATGTCCGTGA ACCATATTCCAATGTTGATGCTGTGCATGTCACTCGTTTCATAGGGCTGGCATGCGTTGGAAATAAAGATAAGCAGGTTT GGCTATTCTTCTTTAGCATATGTCTATATGGGATTGTCTTTATTTAATTGAAAATTGCAAATTCTTTATCATTTTCATGT GATAAAACTTAAAAGTGGTTATGATTAATTGGTTGTCGACATGGTGATTCTTCTTTCAGTCGATTTTATGAAATTTTCTG CGTAAAAAAATGCCCTATTCTTCACCGGAATTCCCATGAGCTCTATGCTCAAGTTTCTTCTTCCTCTGTGTGTTTATGTC CGTATCACTAGTTGATGTGTATTATATTATAGATATCTTTGGACTTTCTGGAGTTGTCAATTGAGATAGTACTTTATTTA TTCTCTTATGGAGAAAATAAACTTTTCATATATCTCTAAAAGCAATGGGGTAAAATTTTGTTTGCTTTTACATGCCAGAA ATTTATTCATGCAATTTCTCCAACACCTGCATCCACCATGTCTTCAACTGAGCTTGCCATGAAAACCACAACTACCACCT TATCACCATACACATCTGTGGGGAACAAAACTTCTCCAAAGGATACCACAAAGAGATCCAGTGATGGTATCTCTGATTCT CAATATTGGAGATATGATGATGTTTCTCAAAAGCGATTAAAACATGGAGCTGGGGATGGTGATAAGCTGTGTTTCAAATT TGTATCATCTGGCTCTTGTCCACGAGGAGAGAAGTGCAATTTTCGACATGATATAGATGCAAGGGAACACGGCATGAGAG GCGTTTGTTTTGATTTTTTGAATAAGGGAAAATGTGAAAGGGGTCCAGATTGCAACTTTAAGCACAGCTTGCAGGATGAA GGTGATATGCATCCTTCCACGAGACCTGGGTCCCGAAGTATTAGGTCTAGCAGGTTTGTCTTTTGACTTACTATATTCTA TAATTAATATACATTCAGTTCTTTGGTGATACATGATTTGTGATTTTTTGGGTCATATCAAGACTAATGTGGTTAATTTT TAGTTTGTTATTCCTCATATTTTGGTTTATTTGGTCGTTCCGTGTTCACTTAAACTTTAGGTGTTTTGCCATTGATAAAT CTATCCTACAATACAACTGCAGATCTCAAGAATGTTGGTTTTGCTTGTCAAGCCCCAATGTGGAGTCACATTTAATAATA AGCATTGGGGAAAATTACTATTTGGCATTGGCTAAAGGTCCACTTGTTGAAGACCATGTGCTGATAATACCAGTTGAGCA TATGCCAAGTACCCCGTCCATGTCTTCAGAATCTGAAGTTGAGCTCTTTCGGTTTCAAAACAGTCTCAAGAGGTACTACA AGGACCAGGAAAAGGAGGTCATCTTTTTTGAGTGGCTTTCTGTACGAGGAACTCATGCCAATCTTCAGGTAAAAGAAGTT TCAGCGAGTTGAAATTCTGGCTAGTAATTGCTCTTTGCACTTTGTTTATTTAATGAGCTGGCTCCCCCCTCCTCCACCTC CTCCTCCTCCTCCTCCTCCTCCTCCCTTCTTTTCATGCCTGCCCACTTTCTACTTGTATAGTTTGCTTAATTTCACTTTA TGTTACAAACTCAAAAAAAGAACTAGAAAATTGATAGAAACAGGAAAAAAAGGAAAGAACAATTTTTATTGAATGATTGA GAATAGGAGAAAAATTTCTTATCTCGGGTTTCCCCTTTCACACAAACTTTCTAAATTCCCTGAATGAATTCCCTAAATTC TCTTTATATATCCCCTTCCAACTGACTAACTAATGGACTAACTGCTCTGGCTGACCTTTTTCTGTCATAAGTCCTTCGAT TTTGGATATTTTATCTGGTATCTATCTCGTTAGTTGGTTATTTTTAGCTCTAACATTAGTATTTTGTTAATTTTGTTCCC CCCCCCCCTCCTCGATGACCGTATTAGTTCAACTTTTATGTGATTGAGATCAATGGTAGCTTCATAGTGTCTCTCTCTCA TTTTACCCTTTTATGCAGGCCATTCCCATTCAATCTTCCAAAGCAGTTATGGTTGAAAAAGCATTCAATTTAGCTGCACA AAAGTTGGGATTTGAATTTGTGGCAAAGAAATGTAAGTATTAATCTTCAAGGAATGCTTCATATTTCATTGCTTATGCGG TCCCCTTCAGATCCGGATCCATCAAGTTCTTCTTAACTATTATTCCCCCTTAACTTCCTTTTTTTTCTTTACCTTGTTCT CATCTGCACTTGGTGTTACTTAAAAAATCAACTTATTTCTAAGCTTCTGCTGCATTCTTATGTTGTTACTTGTTGCCACT CAGTTGATAGCATATCTGATGGAAGGAAGTTTCTTAAGGAACAAATTGATGGGAAATCAAGCTTGTTTTATGCTGAAATA CCAGGAGGCACAATTTTGCTCCATCATGTTGAGGAGAAAGAAAGATTTTCTGCCCAATTTGGACGAGAGGTAGCCTTCTA AAAGTGTGATGTACTAATAAATATAAAATCATATGAATATATTTCTTAACCGTATCTTTTTCTGGAAGAGATCATTAATG GTTAGCGTGATTTTGTTATAAAATTATAACTTGTATTCATCAGAGTAAGAAGTAAAACTTGTAAATGTGAATCAGGTTCT GGCAGGGTTGCTTAATATGGCAGATAATGCAGATTGGAGGACTCGCAAATATAGCAAAGATGAAGAGATGAAATTAGTCG AAGATTTCAAGAGTCAATTTCAAGAATATGATCCAAACTGTTGATTATTCAGCATTAAATTCTCAGTTTACACCTATGCC ACGATGACTATGGTGACTCCTTAATCTAATCGTACCGAACCTTTCTGTTATATGCCCAATTGCATGTGATGCTGAATGTC AAACTGAGAGGTGCATATTTGTTTAATTTTATAACCACTCAACTTTCTGTTTGCTTGATAATTGTAACCAACTGATTTTG CAGTTTTTTCTTTCCCAATGATTATGTGCTTAGGAGACATGATAGTCCGGATGGATTTCAATTGGTCACTTTTTTATCAG CATTTCCTAGGGTGAGCTTCATTTTCCTCTCCTAACTTGGACTTGCTGTAACTTGTTCTCTCTAAACCCGGTGGCTATTT TTGTGACTATTATATGCCACATTATATAGATGCCTCAACCTTGCTATTCTAAATATTTCACGCGAGGAATCACCAAGCTG AAGGTTCTATTCTATCACATAGCTATTTGCATTGGTGACACAAGCAGCCGCTGCATATATATTTTGAGGCACAGGGAGGT TGAGGGTGAGATATACTTCTACTTCCAACTAGTTAGTCGGTATCCTTTTATTAATGCTCCGATCTTGCAATATCTGCACT TCCATTTGCCTAGAATTGAAGTCTCTACAATTGTGTTTTTTATCTCAAAGGTTGGCTTCAACCCTTCTGTGGAAATTCAG TTTTGTAGACTCTAGTTGATTGGTGTAACATTATTTTGTTGTTCTCATGTAATTATTGTGCCTTTTCATTTGTATTTTTC TGGCAGCTTTTATTATCTTTAGGACTATAATGCAATGCACTGTAGTATTTTTCTGTATGCTGTTCCTAATCCTAAATGTT TGCTCTATTGATGACCTTAGCTTATTGGCTAATGCTAGCCTAGTGGCCCCCGGAAGGAATTTTTAGCCACTTTAATAAGT TTTTCATGGACTG
CDS sequence (LotjaGi4g1v0309500.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTTCAACTGAGCTTGCCATGAAAACCACAACTACCACCTTATCACCATACACATCTGTGGGGAACAAAACTTCTCC AAAGGATACCACAAAGAGATCCAGTGATGGTATCTCTGATTCTCAATATTGGAGATATGATGATGTTTCTCAAAAGCGAT TAAAACATGGAGCTGGGGATGGTGATAAGCTGTGTTTCAAATTTGTATCATCTGGCTCTTGTCCACGAGGAGAGAAGTGC AATTTTCGACATGATATAGATGCAAGGGAACACGGCATGAGAGGCGTTTGTTTTGATTTTTTGAATAAGGGAAAATGTGA AAGGGGTCCAGATTGCAACTTTAAGCACAGCTTGCAGGATGAAGGTGATATGCATCCTTCCACGAGACCTGGGTCCCGAA GTATTAGGTCTAGCAGATCTCAAGAATGTTGGTTTTGCTTGTCAAGCCCCAATGTGGAGTCACATTTAATAATAAGCATT GGGGAAAATTACTATTTGGCATTGGCTAAAGGTCCACTTGTTGAAGACCATGTGCTGATAATACCAGTTGAGCATATGCC AAGTACCCCGTCCATGTCTTCAGAATCTGAAGTTGAGCTCTTTCGGTTTCAAAACAGTCTCAAGAGGTACTACAAGGACC AGGAAAAGGAGGTCATCTTTTTTGAGTGGCTTTCTGTACGAGGAACTCATGCCAATCTTCAGGCCATTCCCATTCAATCT TCCAAAGCAGTTATGGTTGAAAAAGCATTCAATTTAGCTGCACAAAAGTTGGGATTTGAATTTGTGGCAAAGAAATTTGA TAGCATATCTGATGGAAGGAAGTTTCTTAAGGAACAAATTGATGGGAAATCAAGCTTGTTTTATGCTGAAATACCAGGAG GCACAATTTTGCTCCATCATGTTGAGGAGAAAGAAAGATTTTCTGCCCAATTTGGACGAGAGGTTCTGGCAGGGTTGCTT AATATGGCAGATAATGCAGATTGGAGGACTCGCAAATATAGCAAAGATGAAGAGATGAAATTAGTCGAAGATTTCAAGAG TCAATTTCAAGAATATGATCCAAACTGTTGA
Protein sequence (LotjaGi4g1v0309500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSTELAMKTTTTTLSPYTSVGNKTSPKDTTKRSSDGISDSQYWRYDDVSQKRLKHGAGDGDKLCFKFVSSGSCPRGEKC NFRHDIDAREHGMRGVCFDFLNKGKCERGPDCNFKHSLQDEGDMHPSTRPGSRSIRSSRSQECWFCLSSPNVESHLIISI GENYYLALAKGPLVEDHVLIIPVEHMPSTPSMSSESEVELFRFQNSLKRYYKDQEKEVIFFEWLSVRGTHANLQAIPIQS SKAVMVEKAFNLAAQKLGFEFVAKKFDSISDGRKFLKEQIDGKSSLFYAEIPGGTILLHHVEEKERFSAQFGREVLAGLL NMADNADWRTRKYSKDEEMKLVEDFKSQFQEYDPNC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 355 | 355 | 1.4E-116 | ||
| MobiDBLite | 1 | 37 | 37 | - | – | |
| MobiDBLite | 1 | 28 | 28 | - | – | |
| PANTHER | 1 | 355 | 355 | 1.4E-116 | – | |
| Gene3D | 56 | 126 | 71 | 4.5E-11 | – | |
| ProSiteProfiles | 59 | 87 | 29 | 14.258 | ||
| SMART | 61 | 86 | 26 | 0.0017 | ||
| SUPERFAMILY | 63 | 88 | 26 | 7.38E-6 | ||
| SMART | 93 | 118 | 26 | 0.0025 | ||
| ProSiteProfiles | 96 | 119 | 24 | 13.413 | ||
| SUPERFAMILY | 96 | 120 | 25 | 4.71E-5 | ||
| Gene3D | 127 | 254 | 128 | 1.9E-7 | ||
| Pfam | 135 | 250 | 116 | 1.0E-37 | ||
| SUPERFAMILY | 141 | 214 | 74 | 3.59E-8 | ||
| Pfam | 265 | 353 | 89 | 4.4E-16 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi4g1v0309500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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