Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi4g1v0309500.4

Overview

Field Value
Gene ID LotjaGi4g1v0309500
Transcript ID LotjaGi4g1v0309500.4
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Zinc finger CCCH domain-containing protein 64; TAIR: AT5G56900.2 CwfJ-like family protein / zinc finger (CCCH-type) family protein; Swiss-Prot: sp|Q84WU9|C3H64_ARATH Zinc finger CCCH domain-containing protein 64; TrEMBL-Plants: tr|A0A151SRU7|A0A151SRU7_CAJCA Zinc finger CCCH domain-containing protein 64; Found in the gene: LotjaGi4g1v0309500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:68557347..68558036) extracted from Lotus japonicus Gifu genome v1.2.

ATGGCCCCTCGAATCCTCCTATGCGGCGACGTTTTGGGCCGCCTGAACCAGCTCTTCAAGCGCGTCTCATCGGTGAGTCT CTCTCTTTCTCTCTCTAGGGTTTATCCTCTTAGGCATTGCAGCGAATCATCATCACTCACAGTGATCGCCGTTTTCAGGT GAACAAATCGGCGGGTCCATTCGACGCGCTCTTGTGCGTGGGTCAATTCTTCCCGGACTCACCTGACCTGATGGAAGACT TCATGGCCTACATCGAAGGTGGCTCCAGCATTCCCCTCCCGACTTACTTCATCGGCGACTACGGCGTCGCAGCCCCGAAA ATTCTCTTGGCAGCTTCCAAGGACTCTGCTAACCGTGGTTTCATGATGGAGGGCTTGAAGGTTTGTGAGAATTTGTATTG GTTGAAAGGCAGTGGCAAATTCACACTCAATGGTAGGTAACTACTATGCATGAATGAATTGAATTGAATTGAATTCCTAT CTATACTTGAAATGAAATGCAGTGGCAAATTCTTACCTATTGTAATGATTTGTAGGGTTATCTGTGGCTTATTTATCTGG TAGGAAATCATCAAATGTTCAACAGTTTGGAACTTATAGTCAAGATGATGTTGATGCTTTGCGCGCAATAGCTGAGGAAC CTGGAATTGTTGATTTGTTCTTGACATATCCTTCAATTCATGTGCATTAA
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0309500.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCCCCTCGAATCCTCCTATGCGGCGACGTTTTGGGCCGCCTGAACCAGCTCTTCAAGCGCGTCTCATCGGTGAACAA ATCGGCGGGTCCATTCGACGCGCTCTTGTGCGTGGGTCAATTCTTCCCGGACTCACCTGACCTGATGGAAGACTTCATGG CCTACATCGAAGGTGGCTCCAGCATTCCCCTCCCGACTTACTTCATCGGCGACTACGGCGTCGCAGCCCCGAAAATTCTC TTGGCAGCTTCCAAGGACTCTGCTAACCGTGGTTTCATGATGGAGGGCTTGAAGGTTTGTGAGAATTTGTATTGGTTGAA AGGCAGTGGCAAATTCACACTCAATGGGTTATCTGTGGCTTATTTATCTGGTAGGAAATCATCAAATGTTCAACAGTTTG GAACTTATAGTCAAGATGATGTTGATGCTTTGCGCGCAATAGCTGAGGAACCTGGAATTGTTGATTTGTTCTTGACATAT CCTTCAATTCATGTGCATTAA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0309500.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAPRILLCGDVLGRLNQLFKRVSSVNKSAGPFDALLCVGQFFPDSPDLMEDFMAYIEGGSSIPLPTYFIGDYGVAAPKIL LAASKDSANRGFMMEGLKVCENLYWLKGSGKFTLNGLSVAYLSGRKSSNVQQFGTYSQDDVDALRAIAEEPGIVDLFLTY PSIHVH
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR12072:SF4
3 160 158 2.2E-52 –
PANTHER
PTHR12072
3 160 158 2.2E-52
IPR040194
CDD
cd07380
6 73 68 7.84319E-29 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0309500.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…