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LotjaGi4g1v0352800.2

Overview

Field Value
Gene ID LotjaGi4g1v0352800
Transcript ID LotjaGi4g1v0352800.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description ATP phosphoribosyltransferase; TAIR: AT1G09795.1 ATP phosphoribosyl transferase 2; Swiss-Prot: sp|Q8GSJ1|HIS1B_ARATH ATP phosphoribosyltransferase 2, chloroplastic; TrEMBL-Plants: tr|A0A067L1W5|A0A067L1W5_JATCU Uncharacterized protein; Found in the gene: LotjaGi4g1v0352800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:73135473..73137262) extracted from Lotus japonicus Gifu genome v1.2.

ATGGGGACAGCTGATGCTATCTTGGACCTTGTGAGTAGTGGGATTACACTGAAAGAAAATAACCTGAAGGAAATTGAAGG AGGAGTTGTTTTGGAAAGCCAGGTAAGCAATTATTGACTATTCTGAGACTAGCATGATCTGTTGGTTTTAAAACTTAAAA AATAAGAAAGCAGACACCCGGTAGCTGCACTTGCATTGTGCCCTGTACGATTTTGTCTCATCCTGACAATCGAATGCTCT TCAGGCTGTTCTTGTTGCAAGCAGAAAATCCATGGTCCAACGGAAAGGAGTACTTGAAACAACTCATGAGATGCTTGAAA GATTGGAGGCACATCTGCGGGCTATTGGGCAGTTCACGGTGCGTATGTAGAATATAGAATTTATAATTTCCACTTTCCAT CCTTTCAAAATGGAGGCCTGTTCATGGGTTTGAACAGAAAATCAAACTTAACCGGAAAGCAGTTATGCCAAACTGAACAA ACCAAACTTGTTATAGTATAGAGGAAACCAAACCAGTTATTTGATTCAGTGAACCGGTTTTAGTATTGCGAACTGGTTTG GATTTATGAACCGTTTCAAGAGCAGGTTTTGTTTAAGAAACAATTCAAGTAACAGTTATGCTGATTTCAGAACCACTTTA AGAACTGCCACTTTAAGAACCAATTTAAAGAACTGGTTTTGAGAACCAACCAATTTGGGAACTGACATTACCACTTAAAG GTAGCAGCAAATCAGTTTGCTGCATGAAGAAATTAGTTTTAAGAATAAAAAAATAGGGTAAACGAATAACTACATGTTAT TTTCCTGTTGAACAAGCACCTTGACCAAATGCAACTTGCGATTTGCTCACAGCTTGCTATATGTAAATGTAAAGATTTTG AGAACGGATCCAATAGGAATAACAATTTTATATATATGAAAACTGAAAACAGACTTCACAAGGAAAATGATTCTAGTATC ACCTGGCTCATGACGATCAACGATTTAGGGTTCAGTAGTTGAGGGAAGGGGTTATAGTCCACAACTCACAAGCGAGAGAA TCGGGACGCAGCCTTTAGCCATCAGAGAATCGCAAGAGGGTCATAGTTTGCATGAGAAATTTAGTGTCCAAGTTGTCTTT TAGAATTAGTTTGACTAACCCCTTTAGTGGTTTGGTGTGTTGAGAGAGAAGAGAAATGTGTGACATACGATGTAAATTCA GTTATTATAATACAAGAATTTACAATTAATGTAACCATAATAATATACAATACCTAATACTCACAATTATTCTATTTACA TTATTTCTAACACAGCGATTTTTTGGAGTGAGGTTAGTGCAACTTACAATTAAAATCGATTCACAATGAATTATGCACAT GCCTACCAAATTCCAGTGTCTGCTTTTCTTTTCATTCCATTTTATAATGCTTGACTTGGTAGGTTACTGCAAACATGAGA GGAAGCAGCGCAGAGGAAGTGGCTGAGAGGGTACTGAGTCAACCATCATTATCTGGGTTGCAGGTATGATATTGAATGAA ATATTTACATTTTCGGGGAGGATCTTCCCTTATAAACATTTTCATTCTAAACTAGCAAAATCCGATATATACTGTGCATT GTAATTATGAGTAGTGTCATGTTTTTGAGAGGTATACCTGATTGTCTAATATCTGCAGGGACCCACTGTTAGTCCTGTTT TCTGCAAACGTGATGGGAAGGTGACCGCAGACTATTATGCCATTGTCATATGCGTGCCCAAGAAGGCACTATACAAGTCT GTGCAACAACTTAGAGCGGTGAGTTTTTGA
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0352800.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGGACAGCTGATGCTATCTTGGACCTTGTGAGTAGTGGGATTACACTGAAAGAAAATAACCTGAAGGAAATTGAAGG AGGAGTTGTTTTGGAAAGCCAGGTTACTGCAAACATGAGAGGAAGCAGCGCAGAGGAAGTGGCTGAGAGGGTACTGAGTC AACCATCATTATCTGGGTTGCAGGGACCCACTGTTAGTCCTGTTTTCTGCAAACGTGATGGGAAGGTGACCGCAGACTAT TATGCCATTGTCATATGCGTGCCCAAGAAGGCACTATACAAGTCTGTGCAACAACTTAGAGCGGTGAGTTTTTGA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0352800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGTADAILDLVSSGITLKENNLKEIEGGVVLESQVTANMRGSSAEEVAERVLSQPSLSGLQGPTVSPVFCKRDGKVTADY YAIVICVPKKALYKSVQQLRAVSF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.40.190.10
1 34 34 2.6E-9 –
PANTHER
PTHR21403:SF7
1 35 35 6.5E-52 –
SUPERFAMILY
SSF53850
1 49 49 4.78E-7 –
PANTHER
PTHR21403
1 35 35 6.5E-52
IPR001348
Pfam
PF01634
1 40 40 6.1E-8
IPR013820
PANTHER
PTHR21403:SF7
35 102 68 6.5E-52 –
PANTHER
PTHR21403
35 102 68 6.5E-52
IPR001348
Pfam
PF08029
35 102 68 1.3E-11
IPR013115

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000105
Biological process Histidine biosynthetic process The chemical reactions and pathways resulting in the formation of histidine, 2-amino-3-(1H-imidazol-4-yl)propanoic acid.
Subterm of
GO:0000287
Molecular function Magnesium ion binding Interacting selectively and non-covalently with magnesium (Mg) ions.
Subterm of
GO:0003879
Molecular function ATP phosphoribosyltransferase activity Catalysis of the reaction: 1-(5-phospho-D-ribosyl)-ATP + diphosphate = ATP + 5-phospho-alpha-D-ribose 1-diphosphate.
Subterm of
GO:0005737
Cellular component Cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0352800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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