Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0379000 |
| Transcript ID | LotjaGi4g1v0379000.3 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cellulose synthase; TAIR: AT4G18780.1 cellulose synthase family protein; Swiss-Prot: sp|Q8LPK5|CESA8_ARATH Cellulose synthase A catalytic subunit 8 [UDP]-forming]; TrEMBL-Plants: tr|A0A0R0IKK5|A0A0R0IKK5_SOYBN Cellulose synthase; Found in the gene: LotjaGi4g1v0379000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:75832268..75837409) extracted from Lotus japonicus Gifu genome v1.2.
TCCCAAATCAGAAATCCCTAAATTTTGGGAAAAACAGTTCTGAAGAAATCTTAAGTTATTATTTGTAGTATTTTGGAATA TTGTTAATATGTTCTTATCTGAACTTACAAACACACCTCGAATTTTGTAGGATGTTGGACTCCACGCTAGACATGTCAGT TCAGTGTCCACAGTTGATGATAGTGGTAAATAAGAGACTTAAGACCACTTCTTCTTGAAAATTTCTTTAGAAGCAGTCTT TGATAATCACAACACGGTTTTTCTTGTAGATGTAAATGATAAAACTGGGAATTCAACATGGAAAAGTCGACTACAAAGCT GGAAGGGAAAGGAGAAAAAGAACAAGAAGAAAAAGGCTGCACCTAAGGCTGAAAATGAGTCCTCAGCTCCACCAGAGCAG CAGATGGAAGGAATACAGTGAGTTGAATCAGAAATGAAATGAATTTCCTGAAATGGATAACAAAATTTGTATCAAAATAG CATTTAATTAAATGTTAACAAACATTTCTCACCTTAACTAACATTAAGAGAAGCTGTAGAATAGATCATATGCCCCTTGT GCACATGTAAAGTGGTAAATTGAGGTGAGGTAGGGATATACCTATTTGGTTTGATGCATGAAATTAGACAGAAAATAAAA ACATTATTTTTGAGAATTCTTGCATTTTCCGATCTTGTCCGATAGTCATAGGCTAAAATCTGTTCAAATTCAGTCATAGA TTTATTCTACAATTCACTTGGTGATATGTTTTGCAGGCCCACAGAAGCTGCTTCTCTACCACTTTCAGTACTTATTCCAT TATCGAAAAGCAAAGTGGCACCCTACAGAACTGTGATCATCATGCGACTAATAATCTTGGCTCTTTTCATTCATTATCGA GTTACAAATCCTGTTGATAGCGCTTTTGGTCTTTGGTTGACATCTATCATCTGTGAGATCTGGTTTGCATTTTCATGGGT GTTAGATCAGTTCCCTAAATGGTTTCCTGTTGACAGACAAACTTTTATTGAGAACCTTTCTGCAAGGTAAGTGCACAAAG TTGCTACAACATTTGGATGTCTTGTACTTTGTGCTCTAAGGGTGATTTAAAATCAAAAATCATATTGTAGAATTGGTATG TTTCTGCTTCTTTCTCTGTTGGGAATGGTGAAAGGTAATCTATGAAAATTGAAATAATAGATAGTAAATAAGAGCTTAAT TTTGATCTTCTATCAATTTAAAAAAAATACTTACACTATGAAACAATTATATGTTACACACATCATTGCAGCAATTATGA TGACAGTTACCTAAGAAGTCTAAGTGTCAAATACTTTTTACTTTGAATCAAAATAAATCTATATAGTAATGTTTAAATTA AATGTGAGAGCACAATGAGAGAGTGCTTTAGATGCTGATACTCACTTCTATAATGCCTTGCCAGGTTTGAAAGAGAGGGT GAACCCTCTGGACTTGCTTCAGTTGATTTCTTTGTCAGTACAGTGGATCCTATGAAAGAACCACCACTGATCACAGCGAA TACAGTGCTTTCTATCCTTGCCGTTGACTACCCGGTTGAAAAAGTATCTTGTTATGTGTCAGACGATGGTGCTGCAATGC TCACATTTGAGTCTCTTGTGGAGACAGCTGAATTTGCAAAGAAGTGGGTGCCATTCTGCAAAAAGTTTTCAATTGAACCA AGAGCACCTGAGTATTACTTCTCACAAAAGATTGACTACCTCAAGGACAAAGTGCAACCTTCTTTTGTGAAGGAACGCAG AGCGATGAAGGTAAGCATAAAAGTTAAAACACCTTTGACATATAAATATATCTGATCTTCTATATTTACCACCTTGTTTT CCCAAATTGATAATCTTAGAGCTACCTCTTCATGATTACTTATAAATTCTGATACAGAGAGACTATGAAGAGTATAAGGT AAGAGTTAATGCTTTGGTATCTAAGGCTCAGAAAGCACCAGAAGATGGATGGACTATGCCAGATGGAACACCTTGGCCGG GAAATAATTCACGCGATCACCCTGGCATGATTCAGGTATTCCCATCATTTCTGTATGTAATCTATTCTCAATGATGATAT AGGTAGGCTTAAATTTTTTACACAAAGTGCTTTGAGTTGTTCTGTGTGATCTCTTTTCAAATGGAAATTTGTAATGTTCA TAAGATTGATGATTTCTATTAATTATTGACCCAGATGCTAGTTATATTTCCTAGTACTTGTCATAGGCTCCTCACTCTTA AAAAAGTGTTAATTTTCAAGAAAATATTATTTTCCATCTCCAGGCTTTCCTTGGACACACCGGTGCACGTGACATAGAAG GAAATGAACTTCCCAGGTTGGTTTACGTTTCCAGAGAGAAAAGACCAGGATACCAGCACCACAAGAAAGCTGGTGCTGAA AATGCACTGGTATGTGTAGTTACCATAACAATATTTCCTTTAAGATCATTAAGATTTATAGTGCTTGATGTTTTAGATGG ATCTATGCAGGTAAGGGTGTCTGCAGTTCTCACAAACGCTCCCTTCATTCTCAATCTTGATTGTGATCATTACGTTAACA ACAGCAAGGCCGTTCGGGAAGCAATGTGTTTTCTCATGGATCCAGAAGTTGGTAGAGACGTGTGTTATGTACAATTCCCT CAAAGATTTGACGGTATTGATCGTAGTGATCGATATGCCAATCGCAATACAGTTTTCTTTGATGTAAGTTTATGACAAAG CAGAGATTTACCATATTGTCAATATAAAGTTTCATTTTCTTATGTGGTAAAAAATGTATCTCGTCAAGCAAATATTTGCA AAGATACTCTACCTAGTCAAAAACAAAAAACAAATTATTTTCTTGTTTTGTGATCAAGAGTCCAATTCCTTCATCTTTTT GTGTCCATGTTGTCTCATTGTTAACAATAGTAATATAATGATTTAAGTATATTGATCAAACATTTTCCTGCATGCAATGC AGTAACTTCTGGATACAACTGTGCAGTTTCCAATCGTCATGCCAATTTAACGGTCTATTTATGATATTCATTCAGGTTAA CATGAAAGGACTTGATGGCATTCAAGGACCAGTATATGTGGGGACTGGATGTGTTTTCAATAGACATGCACTTTATGGCT ATAGCCCACCTTCTATGCACAACTTACCGGGATCTTCATCGTGCTGTTGTGGTGGCCGCTCAAAGAAGTCCACTGAAGAT GTCTCGCTGGCTTACAGAGATGCAAAGAGGGATGAACTTAACGCTGCCACTTATAATCTCAGTGAGATTGACAGTAAGTA TAATTTATTTATTTTTCAATCTGTGAAAGAGAAGCATATAACAAAGTCTTTTTTGTATAATATTTTTCTGGTTTATTTTC TTCTTGCAGATTATGATGAACATGAGAGGTCAATGCTGATTTCACAGATGAGCTTGGAAAAAACTTTTGGCTTGTCAACT GTTCTAATTGAATCTACACTAATGGAGAAGGGAGGGGTTCCTGAATCAGCAGATCCTGCAATGCTGATCAAGGAGGCTGT TCATGTAATTAGCTGTGGATATGAAGAGAAGACTGAATGGGGAAAAGAGGTTTGGCTTGAATGTTAATGTTCTTTTACAA AGTCCATCATCAGATTCTTGCTTTCCTTCTCTTTTACAGTGATATTTCTGTTTGCGTGCTTATTCCACTTGAAATTTGAC TCAAGCAAGACTTACTAGTTATTACACTTAACATGTAAGAAATGTCTTATCACAAAAAGTAAGGTCGGCTATATCGATCA CTTGATACATGTTAAGGATACAGTTGTTTTACATCGGCTGCTGCAGGTCTAACACAACCTTCCTCATTTATCCGGGCATA GGACTGGCTATGACACAGCATAGGCAGAATTTCAAGCAAGACTTATTATGTTTAACTTTTTCTTTTGCTTAGTCTATAGC ATTATTGACTAATTAAAACATCTTTTTTTTTTCAGATGGGCTGGATTTATGGTTCAGTCACTGAGGATATCTTAACTGGG TTCAAGATGCACTCTCGAGGATGGAGATCAATTTACTGCATGCCTTTGAGGCCTGCATTCAAAGGATCAGCACCTATCAA CTTGTCCGATCGGTTGCACCAAGTCCTTCGATGGGCGCTTGGATCAATTGAAATTTTCCTAAGCAGACATTGTCCCCTCT GGTATGGAGTTGCTGGAGGCCATCTCAAATGTCTGCAGAGAATGGCTTATATAAACACCATAGTCTATCCTTTCACATCT CTTCCTCTGATTGCTTATTGTACATTGCCAGCCATTTGCCTTCTCACAGGAAAATTTATTATACCAGTGGTAATTTCCTC ACCTTTATTATTGTTCCACTCATAGAAGCTTCTCCGCATAATTGATTCTGGCTTCAAAATCCATTATAGGATAGCTTCCA AACATGCACTTGGATTATGATTATCCTCCAATTGTTCAACGAAATATAAATTATTTGTAATCACACAACCAAATTAAACT AGTTATAGAAACAGATCAGTATAACAGTTTATAGTGATGCCTTTGATGATGTTATTGTTTACAATTTAATACAGCTTTCC AACCTTGCAAGTGTTCTCTTCCTTGGACTTTTCCTCTCCATTATAATGACTAGTGTGCTTGAGCTTCGCTGGAGCGGTGT TAGCATCGAGGATTTGTGGCGTAACGAGCAGTTCTGGGTGATTGGAGGTGTCTCAGCACATTTGTTTGCAGTCTTCCAAG GATTGCTCAAGATGTTGGCTGGTGTTGATACTAACTTCACCGTCACGGCCAAGGCCGCTGAGGACGGCGAGTTTGGTGAT CTTTACATTGTGAAGTGGACAACTCTCTTGATTCCTCCAACAACCCTCATCGTTGTTAACATGGTTGGTGTTGTTGCTGG ATTCTCTGATGCACTGAATGGAGGATATGAGTCATGGGGACCACTCTTTGGGAAGGTGTTCTTTGCCTTCTGGGTGATTT TTCATCTCTATCCATTCCTCAAGGGTCTCATGGGTCGCCAAAACAGAACTCCCACCATTGTTATTCTCTGGTCAGTGTTG CTGGCCTCTGTCTTCTCAATGATTTGGGTCAAGATAGATCCATTTGTGAACAAAGTTGACAGTGAAACCATTGCTGAGGC ATGTGTTGCTATAGATTGTTAA
CDS sequence (LotjaGi4g1v0379000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGGAATACAGCCCACAGAAGCTGCTTCTCTACCACTTTCAGTACTTATTCCATTATCGAAAAGCAAAGTGGCACC CTACAGAACTGTGATCATCATGCGACTAATAATCTTGGCTCTTTTCATTCATTATCGAGTTACAAATCCTGTTGATAGCG CTTTTGGTCTTTGGTTGACATCTATCATCTGTGAGATCTGGTTTGCATTTTCATGGGTGTTAGATCAGTTCCCTAAATGG TTTCCTGTTGACAGACAAACTTTTATTGAGAACCTTTCTGCAAGGTTTGAAAGAGAGGGTGAACCCTCTGGACTTGCTTC AGTTGATTTCTTTGTCAGTACAGTGGATCCTATGAAAGAACCACCACTGATCACAGCGAATACAGTGCTTTCTATCCTTG CCGTTGACTACCCGGTTGAAAAAGTATCTTGTTATGTGTCAGACGATGGTGCTGCAATGCTCACATTTGAGTCTCTTGTG GAGACAGCTGAATTTGCAAAGAAGTGGGTGCCATTCTGCAAAAAGTTTTCAATTGAACCAAGAGCACCTGAGTATTACTT CTCACAAAAGATTGACTACCTCAAGGACAAAGTGCAACCTTCTTTTGTGAAGGAACGCAGAGCGATGAAGAGAGACTATG AAGAGTATAAGGTAAGAGTTAATGCTTTGGTATCTAAGGCTCAGAAAGCACCAGAAGATGGATGGACTATGCCAGATGGA ACACCTTGGCCGGGAAATAATTCACGCGATCACCCTGGCATGATTCAGGCTTTCCTTGGACACACCGGTGCACGTGACAT AGAAGGAAATGAACTTCCCAGGTTGGTTTACGTTTCCAGAGAGAAAAGACCAGGATACCAGCACCACAAGAAAGCTGGTG CTGAAAATGCACTGGTAAGGGTGTCTGCAGTTCTCACAAACGCTCCCTTCATTCTCAATCTTGATTGTGATCATTACGTT AACAACAGCAAGGCCGTTCGGGAAGCAATGTGTTTTCTCATGGATCCAGAAGTTGGTAGAGACGTGTGTTATGTACAATT CCCTCAAAGATTTGACGGTATTGATCGTAGTGATCGATATGCCAATCGCAATACAGTTTTCTTTGATGTTAACATGAAAG GACTTGATGGCATTCAAGGACCAGTATATGTGGGGACTGGATGTGTTTTCAATAGACATGCACTTTATGGCTATAGCCCA CCTTCTATGCACAACTTACCGGGATCTTCATCGTGCTGTTGTGGTGGCCGCTCAAAGAAGTCCACTGAAGATGTCTCGCT GGCTTACAGAGATGCAAAGAGGGATGAACTTAACGCTGCCACTTATAATCTCAGTGAGATTGACAATTATGATGAACATG AGAGGTCAATGCTGATTTCACAGATGAGCTTGGAAAAAACTTTTGGCTTGTCAACTGTTCTAATTGAATCTACACTAATG GAGAAGGGAGGGGTTCCTGAATCAGCAGATCCTGCAATGCTGATCAAGGAGGCTGTTCATGTAATTAGCTGTGGATATGA AGAGAAGACTGAATGGGGAAAAGAGATGGGCTGGATTTATGGTTCAGTCACTGAGGATATCTTAACTGGGTTCAAGATGC ACTCTCGAGGATGGAGATCAATTTACTGCATGCCTTTGAGGCCTGCATTCAAAGGATCAGCACCTATCAACTTGTCCGAT CGGTTGCACCAAGTCCTTCGATGGGCGCTTGGATCAATTGAAATTTTCCTAAGCAGACATTGTCCCCTCTGGTATGGAGT TGCTGGAGGCCATCTCAAATGTCTGCAGAGAATGGCTTATATAAACACCATAGTCTATCCTTTCACATCTCTTCCTCTGA TTGCTTATTGTACATTGCCAGCCATTTGCCTTCTCACAGGAAAATTTATTATACCAGTGCTTTCCAACCTTGCAAGTGTT CTCTTCCTTGGACTTTTCCTCTCCATTATAATGACTAGTGTGCTTGAGCTTCGCTGGAGCGGTGTTAGCATCGAGGATTT GTGGCGTAACGAGCAGTTCTGGGTGATTGGAGGTGTCTCAGCACATTTGTTTGCAGTCTTCCAAGGATTGCTCAAGATGT TGGCTGGTGTTGATACTAACTTCACCGTCACGGCCAAGGCCGCTGAGGACGGCGAGTTTGGTGATCTTTACATTGTGAAG TGGACAACTCTCTTGATTCCTCCAACAACCCTCATCGTTGTTAACATGGTTGGTGTTGTTGCTGGATTCTCTGATGCACT GAATGGAGGATATGAGTCATGGGGACCACTCTTTGGGAAGGTGTTCTTTGCCTTCTGGGTGATTTTTCATCTCTATCCAT TCCTCAAGGGTCTCATGGGTCGCCAAAACAGAACTCCCACCATTGTTATTCTCTGGTCAGTGTTGCTGGCCTCTGTCTTC TCAATGATTTGGGTCAAGATAGATCCATTTGTGAACAAAGTTGACAGTGAAACCATTGCTGAGGCATGTGTTGCTATAGA TTGTTAA
Protein sequence (LotjaGi4g1v0379000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEGIQPTEAASLPLSVLIPLSKSKVAPYRTVIIMRLIILALFIHYRVTNPVDSAFGLWLTSIICEIWFAFSWVLDQFPKW FPVDRQTFIENLSARFEREGEPSGLASVDFFVSTVDPMKEPPLITANTVLSILAVDYPVEKVSCYVSDDGAAMLTFESLV ETAEFAKKWVPFCKKFSIEPRAPEYYFSQKIDYLKDKVQPSFVKERRAMKRDYEEYKVRVNALVSKAQKAPEDGWTMPDG TPWPGNNSRDHPGMIQAFLGHTGARDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPFILNLDCDHYV NNSKAVREAMCFLMDPEVGRDVCYVQFPQRFDGIDRSDRYANRNTVFFDVNMKGLDGIQGPVYVGTGCVFNRHALYGYSP PSMHNLPGSSSCCCGGRSKKSTEDVSLAYRDAKRDELNAATYNLSEIDNYDEHERSMLISQMSLEKTFGLSTVLIESTLM EKGGVPESADPAMLIKEAVHVISCGYEEKTEWGKEMGWIYGSVTEDILTGFKMHSRGWRSIYCMPLRPAFKGSAPINLSD RLHQVLRWALGSIEIFLSRHCPLWYGVAGGHLKCLQRMAYINTIVYPFTSLPLIAYCTLPAICLLTGKFIIPVLSNLASV LFLGLFLSIIMTSVLELRWSGVSIEDLWRNEQFWVIGGVSAHLFAVFQGLLKMLAGVDTNFTVTAKAAEDGEFGDLYIVK WTTLLIPPTTLIVVNMVGVVAGFSDALNGGYESWGPLFGKVFFAFWVIFHLYPFLKGLMGRQNRTPTIVILWSVLLASVF SMIWVKIDPFVNKVDSETIAEACVAIDC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 25 | 25 | - | – | |
| PANTHER | 8 | 827 | 820 | 0.0 | – | |
| PANTHER | 8 | 827 | 820 | 0.0 | – | |
| TMHMM | 25 | 47 | 23 | - | – | |
| Phobius | 26 | 43 | 18 | - | – | |
| Phobius | 44 | 54 | 11 | - | – | |
| TMHMM | 54 | 73 | 20 | - | – | |
| Phobius | 55 | 74 | 20 | - | – | |
| Phobius | 75 | 603 | 529 | - | – | |
| Pfam | 108 | 818 | 711 | 0.0 | ||
| SUPERFAMILY | 121 | 620 | 500 | 8.44E-9 | ||
| Gene3D | 259 | 436 | 178 | 2.1E-13 | ||
| Phobius | 604 | 626 | 23 | - | – | |
| TMHMM | 604 | 626 | 23 | - | – | |
| Phobius | 627 | 632 | 6 | - | – | |
| TMHMM | 633 | 655 | 23 | - | – | |
| Phobius | 633 | 653 | 21 | - | – | |
| Phobius | 654 | 672 | 19 | - | – | |
| Phobius | 673 | 695 | 23 | - | – | |
| TMHMM | 675 | 697 | 23 | - | – | |
| Phobius | 696 | 715 | 20 | - | – | |
| Phobius | 716 | 737 | 22 | - | – | |
| TMHMM | 721 | 743 | 23 | - | – | |
| Phobius | 738 | 756 | 19 | - | – | |
| TMHMM | 753 | 775 | 23 | - | – | |
| Phobius | 757 | 775 | 19 | - | – | |
| Phobius | 776 | 786 | 11 | - | – | |
| Phobius | 787 | 807 | 21 | - | – | |
| TMHMM | 788 | 805 | 18 | - | – | |
| Phobius | 808 | 828 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Cellulose synthase (UDP-forming) activity | Catalysis of the reaction: UDP-glucose + ((1,4)-beta-D-glucosyl)(n) = UDP + ((1,4)-beta-D-glucosyl)(n+1). | ||
| Biological process | Cellulose biosynthetic process | The chemical reactions and pathways resulting in the formation of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation. |
Expression pattern of LotjaGi4g1v0379000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…