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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PTHR13301
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 140 results. Now displaying 1 of 3 with 50 rows per page. This search has taken 0.044s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj6g3v0937020.1
LjAstray bZIP with a Ring-finger motif [Lotus japonicus] gi|23496517|dbj|BAC20318.1| chr6 10518286 10524467 -
1 domain prediction
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Lj0g3v0022139.1
n.a. PREDICTED: cellulose synthase-like protein D4-like [Glycine max] gi|356501469|ref|XP_003519547.1| chr0 8943484 8955587 -
1 domain prediction
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Lj0g3v0022139.2
n.a. PREDICTED: cellulose synthase-like protein D4-like [Glycine max] gi|356501469|ref|XP_003519547.1| chr0 8948552 8955587 -
1 domain prediction
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Lj0g3v0043029.1
n.a. PREDICTED: cellulose synthase-like protein H1-like isoform 1 [Glycine max] gi|356543684|ref|XP_003540290.1| chr0 14122433 14123188 -
1 domain prediction
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Lj0g3v0043099.1
n.a. PREDICTED: cellulose synthase-like protein H1-like [Glycine max] gi|356542076|ref|XP_003539497.1| chr0 14162365 14163296 +
1 domain prediction
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Lj0g3v0043119.1
n.a. PREDICTED: cellulose synthase-like protein B4-like isoform X2 [Cicer arietinum] gi|502083325|ref|XP_004487424.1| chr0 14163675 14168151 +
1 domain prediction
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Lj0g3v0080769.1
n.a. PREDICTED: cellulose synthase-like protein D5-like, partial [Cucumis sativus] gi|449468015|ref|XP_004151717.1| chr0 31367518 31367820 +
1 domain prediction
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Lj0g3v0089169.1
n.a. Cellulose synthase-like protein D5 [Medicago truncatula] gi|357511301|ref|XP_003625939.1| chr0 36537153 36539699 +
1 domain prediction
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Lj0g3v0094359.1
n.a. PREDICTED: cellulose synthase-like protein B4-like isoform X2 [Cicer arietinum] gi|502083325|ref|XP_004487424.1| chr0 39654614 39656806 -
1 domain prediction
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Lj0g3v0133049.1
n.a. PREDICTED: transcription factor RF2b-like [Glycine max] gi|356542311|ref|XP_003539612.1| chr0 60803800 60808011 +
1 domain prediction
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Lj0g3v0139499.1
n.a. Cellulose synthase-like D5 [Theobroma cacao] gi|508703296|gb|EOX95192.1| chr0 63876554 63877012 +
1 domain prediction
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Lj0g3v0196239.1
n.a. PREDICTED: transcription factor HY5-like [Glycine max] gi|356504374|ref|XP_003520971.1| chr0 95695676 95698325 +
1 domain prediction
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Lj0g3v0202109.1
n.a. PREDICTED: cellulose synthase-like protein E1-like [Glycine max] gi|356527159|ref|XP_003532180.1| chr0 100049479 100050170 +
1 domain prediction
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Lj0g3v0212169.1
n.a. PREDICTED: cellulose synthase-like protein E1-like [Cicer arietinum] gi|502123509|ref|XP_004498142.1| chr0 107005359 107008202 +
1 domain prediction
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Lj0g3v0212169.2
n.a. PREDICTED: cellulose synthase-like protein E1-like [Cicer arietinum] gi|502123509|ref|XP_004498142.1| chr0 107005871 107008202 +
1 domain prediction
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Lj0g3v0212179.1
n.a. PREDICTED: cellulose synthase-like protein E1-like [Glycine max] gi|356527159|ref|XP_003532180.1| chr0 107008845 107014407 +
1 domain prediction
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Lj0g3v0228129.1
n.a. PREDICTED: cellulose synthase-like protein B3-like [Glycine max] gi|356550030|ref|XP_003543393.1| chr0 117913204 117914001 -
1 domain prediction
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Lj0g3v0245539.1
n.a. PREDICTED: cellulose synthase A catalytic subunit 3 [UDP]-forming] gi|356530659|ref|XP_003533898.1| chr0 127312759 127321229 -
1 domain prediction
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Lj0g3v0245539.2
n.a. PREDICTED: cellulose synthase A catalytic subunit 3 [UDP]-forming] gi|356530659|ref|XP_003533898.1| chr0 127312759 127321229 -
1 domain prediction
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Lj0g3v0249089.1
n.a. PREDICTED: cellulose synthase A catalytic subunit 1 [UDP]-forming] gi|502132343|ref|XP_004501313.1| chr0 129108274 129114705 -
1 domain prediction
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Lj0g3v0287589.1
n.a. PREDICTED: cellulose synthase-like protein E1-like [Glycine max] gi|356527159|ref|XP_003532180.1| chr0 149417509 149423787 +
1 domain prediction
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Lj0g3v0293819.1
n.a. NAD(P)H-quinone oxidoreductase chain [Medicago truncatula] gi|357455457|ref|XP_003598009.1| chr0 152597733 152601374 -
1 domain prediction
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Lj0g3v0305289.1
n.a. cellulose synthase A [Leucaena leucocephala] gi|243010644|gb|ACS94418.1| chr0 159132361 159134759 +
1 domain prediction
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Lj0g3v0305299.1
n.a. PREDICTED: cellulose synthase A catalytic subunit 3 [UDP]-forming] gi|502157997|ref|XP_004510986.1| chr0 159135143 159139743 +
1 domain prediction
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Lj0g3v0337689.1
n.a. PREDICTED: cellulose synthase A catalytic subunit 1 [UDP]-forming] gi|502132343|ref|XP_004501313.1| chr0 176842836 176848985 +
1 domain prediction
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Lj1g3v0130060.1
n.a. PREDICTED: cellulose synthase-like protein D3-like [Glycine max] gi|356538575|ref|XP_003537778.1| chr1 1653647 1659196 -
1 domain prediction
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Lj1g3v4863120.1
n.a. PREDICTED: cellulose synthase-like protein D5-like [Glycine max] gi|356505610|ref|XP_003521583.1| chr1 58936788 58940781 -
1 domain prediction
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Lj2g3v1255060.1
n.a. PREDICTED: cellulose synthase A catalytic subunit 6 [UDP]-forming] gi|356525568|ref|XP_003531396.1| chr2 20070048 20078001 -
1 domain prediction
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Lj2g3v1510590.1
n.a. PREDICTED: cellulose synthase-like protein D3-like isoform X1 [Cicer arietinum] gi|502162336|ref|XP_004512470.1| chr2 23888879 23893887 +
1 domain prediction
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Lj2g3v3303450.1
n.a. PREDICTED: cellulose synthase-like protein E1-like [Glycine max] gi|356553501|ref|XP_003545094.1| chr2 41781457 41787811 +
1 domain prediction
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Lj2g3v3315650.1
n.a. PREDICTED: cellulose synthase-like protein E6-like [Glycine max] gi|356553499|ref|XP_003545093.1| chr2 41847404 41852937 +
1 domain prediction
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Lj2g3v3315650.2
n.a. PREDICTED: cellulose synthase-like protein E6-like [Glycine max] gi|356553499|ref|XP_003545093.1| chr2 41849054 41852937 +
1 domain prediction
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Lj2g3v3315660.1
n.a. PREDICTED: cellulose synthase-like protein E1-like [Glycine max] gi|356553501|ref|XP_003545094.1| chr2 41853613 41854169 +
1 domain prediction
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Lj3g3v0807680.1
n.a. PREDICTED: probable cellulose synthase A catalytic subunit 3 [UDP]-forming] gi|502127241|ref|XP_004499618.1| chr3 9748389 9761757 +
1 domain prediction
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Lj3g3v0807680.2
n.a. PREDICTED: probable cellulose synthase A catalytic subunit 3 [UDP]-forming] gi|502127241|ref|XP_004499618.1| chr3 9748389 9761533 +
1 domain prediction
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Lj3g3v0838350.1
n.a. truncated cellulose synthase catalytic subunit [Gossypium hirsutum subsp]. latifolium] gi|347953849|gb|AEP33550.1| chr3 10570548 10572266 -
1 domain prediction
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Lj3g3v0838360.1
n.a. cellulose synthase [Nicotiana tabacum] gi|10643648|gb|AAG21097.1|AF233892_1 chr3 10572213 10573446 -
1 domain prediction
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Lj3g3v0838370.1
n.a. PREDICTED: cellulose synthase A catalytic subunit 3 [UDP]-forming] gi|356530659|ref|XP_003533898.1| chr3 10573441 10578431 -
1 domain prediction
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Lj3g3v1297270.1
n.a. Cellulose synthase-like protein H1 [Medicago truncatula] gi|357453331|ref|XP_003596942.1| chr3 16748553 16751835 -
1 domain prediction
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Lj3g3v1310580.1
n.a. PREDICTED: cellulose synthase-like protein H1-like isoform 1 [Glycine max] gi|356543684|ref|XP_003540290.1| chr3 16957327 16959706 -
1 domain prediction
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Lj3g3v1310710.1
n.a. PREDICTED: cellulose synthase-like protein B4-like isoform X2 [Cicer arietinum] gi|502083325|ref|XP_004487424.1| chr3 16967140 16971470 -
1 domain prediction
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Lj3g3v1310740.1
n.a. PREDICTED: cellulose synthase-like protein H1-like [Glycine max] gi|356542076|ref|XP_003539497.1| chr3 16971849 16972780 -
1 domain prediction
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Lj3g3v1981230.1
n.a. PREDICTED: cellulose synthase-like protein G1-like [Cicer arietinum] gi|502127117|ref|XP_004499569.1| chr3 25424854 25432252 -
1 domain prediction
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Lj3g3v2838540.1
n.a. PREDICTED: transcription factor RF2b-like [Cicer arietinum] gi|502082485|ref|XP_004487182.1| chr3 34859865 34863405 +
1 domain prediction
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Lj3g3v2921120.1
n.a. PREDICTED: cellulose synthase-like protein H1-like [Glycine max] gi|356515296|ref|XP_003526337.1| chr3 36457171 36460835 +
1 domain prediction
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Lj3g3v2922150.1
n.a. PREDICTED: cellulose synthase-like protein H1-like [Glycine max] gi|356515296|ref|XP_003526337.1| chr3 36469198 36476545 +
1 domain prediction
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Lj3g3v3376510.2
n.a. cellulose synthase [Phyllostachys edulis] gi|296939593|gb|ADH95191.1| chr3 41701550 41703780 +
1 domain prediction
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Lj3g3v3639610.1
n.a. PREDICTED: cellulose synthase-like protein D3-like isoform X1 [Cicer arietinum] gi|502144164|ref|XP_004505600.1| chr3 44182046 44188289 +
1 domain prediction
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Lj4g3v0484800.1
n.a. PREDICTED: cellulose synthase-like protein G2-like [Glycine max] gi|356548660|ref|XP_003542718.1| chr4 7847298 7852171 +
1 domain prediction
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Lj4g3v0484800.2
n.a. PREDICTED: cellulose synthase-like protein G2-like [Cicer arietinum] gi|502143583|ref|XP_004505391.1| chr4 7847992 7852171 +
1 domain prediction
 –