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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0388000 |
| Transcript ID | LotjaGi4g1v0388000.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane 9 superfamily member; TAIR: AT1G10950.1 transmembrane nine 1; Swiss-Prot: sp|Q940G0|TMN1_ARATH Transmembrane 9 superfamily member 1; TrEMBL-Plants: tr|G7L8U5|G7L8U5_MEDTR Transmembrane 9 superfamily member; Found in the gene: LotjaGi4g1v0388000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:76635396..76640175) extracted from Lotus japonicus Gifu genome v1.2.
CTATTGAAACAGATTAAATATCTATTTTTCATTTGTATTTTCAAGTGGCGATTGGCTTCTCTTTTAAATGGATGTATTTT CTTTTCATTGCAGTATCAACGAGAAGACCCAGTTACCCTTTGGGTTAACAAAGTTGGTCCATATAACAATCCACAAGAAA CATACAACTATTACAGCCTCCCATTTTGCCATCCATCTAGTAGTTCGAGTGCTGCACACAAATGGGGTGGTCTTGGTGAG GTCCTGGGTGGCAACGAACTCATTGATAGCCAAATTGAGATAAAGTTTCTAAGTATGGAGGCTTTTGTTGTACTATTTAT TTCATTAAAGAACTCAATAAAATAAACTAGCTTTAATGGATGCTCCTTTTTTCAGGAAATGTGGATAAGACTGTCTTTTG CCAGATAGATCTCAGTGATGCAAATGTTAAACAATTCAAGGATGCAATTGAGAATAACTACTGGTTTGAATTCTTCATGG GTATGTTTTGCATGGTTTCTTGCACTTATTACTTTGAGAACTTGTAGAATGATTGTAATCTCAACAAATGTTGAAAGCTC AAAGAAAATTTTCTTTGGTCATCACGTTAACACAGAGGATAACATAGCTACAACGCAGAAATGTATAGCAGAGGTTACCA TAAAACACTCACAAACTAAGAAACACATATCACTACACTTGGGGGAGAACCCCTATTTGACTGAACAAAGGGGTTGAGGT GAATAATATTTCCATTCCACAGGACCTATCCCCTTGCTTGTTGTATTTGCTGTCCAATTCACTGTATTACTTCACAGCCT TGGAATCATATCAGGGAGATCTCATTAGAAGAGGCGAGTAGTAATTTTAGGTAATGAAAACTTCCAATCAATCCCCGAGG AGACTGAGCAAGCAATGAAGTGGCTTGAGAATCAGTTTCAAACTCACCAGAACAGTGAAGTGCTCATTTGTAAACTAAGT CCATTCCTTGATGTTATAGAATTGGATCAGAATCAATTGAAAATAAACAGTTTTTAAGATAAAGTCAGTCCCAGCTGAGT ATCAGATTAATACGAGAACTAAGATTAAGATGTTAATACAGAAAGAAATCAGAAACAGATCCTTCAAGTTATCCGTATTC ATTTCTCTAACCCCCACTACTAATTGACAGTTATTGTAATGAAAACTACTTGTGATTCTAATCTTCTATTACCAATTTTC CCCTTCCTACTATAATCCCTCATAGTGAGACGTGAGGTTTGGGCTTCTGGAGTAAGACAAACACTTGAATCTAGTTCTGG GTTTCGCTATTTCATTTCAACCACACCGATAGCTCAATGGTGATTGTTCATAAGGATACCAATCTTTGTCAAAGAACAGA GAATTGAAATTTCTTGGAAGTTTGGATCACACTTGTACATAATGTCTTTGGAAATGTTGGAAGGCCTATTTTAATTCTAC TAGATCAAGTTATTGACTCATTGAATGCATGTATTTATTGGTTTTTGTACAACTTAGATGAATAGGATTTCTAAGGTTCC TTTAAAATTTGAGAGATCAACTTGATCTGTTTCTTGAGGCTGTGATGGTGGAATATTTTGTTTTTGGTTGCACCAAGGTA TTCCCACAGCCGGCAACCATGAGATGAGACTAATCTCCACAATGCTCTGAGATCACATGGTGCACAAATATAAACATAAA ATAAGTTGAAAGTTTATGACACATCTTGCTTGGCTTTCTCAGGTGGCTGGGTGTTAACTTAAATCACGTGCATTCTTTAT CTATGTTCTTTTCACAGCCAAGACCGACACAGTTTAATAGAAGATTAGAAGTAGAAAATTATATTATGTATTCCGATTAT CTGGTTGATTGGGAACAGATTCATTAGTAGTTGAGCTGCTATTTTCATCATGTATGATTATTGACATAGAATGCTTGAAA CACTGACTATATATTCTTCAGCATGGAAGCAAAGCTTTGCTGCATTTTGATCTACTAGGCTGGGTATTTTGTGATATTTG TAGTCATCAGAACTGGAAGAAATATCAAGTTAAGAATTCTTGATGTAAAGTCATTTCTTAAACATTCTTGATCTTGAATA CCTTAGTGAGTGTTAGTTTTCCATATTATAAGCACTAGAACCGAAAGAAGTATGAAATTAATAACTCTGTGTGAAGTAAT TTTCTTATGCATTTTATTATGTTTTTGCCTTAATGTTGCCAATGAGAATTTGTTGCTAGCTCCTCATTATTTGTTCTTAT TTAGTAATTCCTGCTTTTCCCTCTTCTTTGGGTGAATAACTTACTTGCTCTTGTTTTTTCATATTGTTTTTTATCTGCTC TGCGATGCGCTAAATACAAGTTCAGATGATCTACCTTTGTGGGGTATGGCTAGAACTGTCTCTTCCTCTTTATCTTTATT TGATATGATTTTGTATTTCATTTATTCATCATTACTGACTATGCTTTTTTCCCCCTGTTCAAGGATATGTTGGTGAACTG CATCCTGATAAAAATAGTGATAATGGCAAGCATGTCCTTTACACACACAAGAATATTATTGTTAAATACAACAACGATCA GGTCAGAAGTTATTTAAATTTCGTACTCTATCTTTTGAGGGGTTTTGAATCCTTGAAGTTTCATATTTAGGTCTATTTCC TTGCAGATTATTCATGTTAATCTCACTCAAGATGTCCCAAGGCCTTTGGAGGCAGGGAAACGTTTGGACATGACATATTC TGTCAAGTGGATTTCTACTAATGTAACTTTTGGACGTCGCTTTGATGTCTACCTGGACTACCCTTTCTTTGAGCATCAGG TACAGCTTTGTTTTTAAGATTGAAATGGTGTTTACAATTAGTTAGTTCTGGCTATGTGTTCATCCATGTTGATCCTACCT TCGCCTGTCACTGAAAATTTTGCTCTTTTTTCCCTTCTAGATCCATTGGTTCTCCATTTTTAACTCTTTCATGATGGTCA TCTTCCTTACTGGATTGGTGTCAATGATATTAATGCGAACTCTGAGAAATGACTATGCAAAATATGCTCGGGAAGATGAT GATTTGGAAACTCTGGTGATGGTTTCATGACTCATATCTGTTCTTATTTATGGGATATGGATTTTCTCCCTAGAAAAATC GTTCTAATTTTCAAAATTTGGTCATTATTTACATGCTTACAGGAGAGAGATGTTAGTGAAGAGTCGGGCTGGAAACTTGT GCATGGTGATGTTTTTCGGCCTCCTCGCTATTTAGTTATTCTTTCAGCTGTTGTTGGCACAGGTGCACAGCTAGCATTGC TGATTCTTCTTGTTATCTTGTTGGCTATTGTTGGGATGTTGTATGTCGGGTATGCACATAACCTTCAACTGACTGTAACA TTCATCTGAATGATGTATTCAATGACATTGTAGTTGTGCATAAATTTTACTTCATGTAATAAGCGCATGACTATTGCTGC TTGCGTATCAAATATTTACAAAACTTCTAGTTTTTTTGTATGGACTTTATGTTGTTTGTCCTTTGCTCTTTCATTCATTT TCAACTAAATTTCCTTCATTGCTTGTCTCAGGCGTGGAGCAATTGTCACAACCTTTATTGTTTGTTATGCTCTCACATCA TTCATTTCTGGTTATGTGAGTGGGGGAATGTACTCGCGAAATGGGGGTAAGAATCTCGTTTAAGTTTGTCTGGGTGGCTT TGTCTAGGCCCCCCCTCTCTCTCAATCTTTATATAACGCTTGTTATCTGTTTGTTAGGTAAAAGCTGGATTAAATCCATG ATCCTTACAGCTTCTATGTTCCCATTCATGTGCTTTGGAATCGGCTTTGTCTTGAACACAATTGCTATATTCTATGGCTC TCTAGCAGCAATCCCATTTGGCACAATGGTGGTTGTTTTTGTCATTTGGGCTTTCATCTCTTTCCCTCTAGCACTTTTAG GCACAGTTGTTGGAAGAAACTTTAGCGGTGCTCCAAATAATCCTTGTCGTGTAAAGACTATTCCTCGTCCCATTCCTGAG AAGAAGTGGTACCTCACACCCTCAGTGGTTTCTCTTATGGGAGGACTGTTACCTTTTGGCAGCATATTCATTGAAATGTA TTTCGTATTTACTTCCTTCTGGAATTACAAGGTGAATTACTGCGCTATGACTTGTTTCAGTAATAAACTTTCTATTCTAC TTATTGGTTTGGTTATGAAGGTTACTTGTTCCTTATCAGAAAGAGCTATATCAAGGAAAATTGTCCTGATAATGGTCATT TTAATTAAATATGTTTGTATTTCAGTGGAAGCTGAGTGAATACAAGCACTGTTAGCTTATATATTTTTTCCTCCTTTGTG ACAAGCAGGTGTACTATGTGTATGGATTTATGCTACTGGTTTTTCTGATCCTGGTCATTGTTACTGTTTGTGTGACAATT GTGGGGACTTACTTTTTGTTAAATGCTGAGAACTACCACTGGCAATGGACTTCTTTCTTTTCAGCTGCCTCGACAGCTGT TTATGTGTATTTGTACTCGATATACTACTACTATGTCAAGACAAAGATGTCAGGCTTCTTCCAAACCAGCTTCTATTTTG GATACACTTTGATGTTTTCTCTTGGACTAGGAATTTTATGCGGTACGTGTTCTTAAGTTTTATGCTGAATGAACCCCATT TCCCTATTACCTGCATAAATGCTTTTATGCTTATTACTTGAACTGGGTTAAAGTTTTTCTTCTAACGTGCAGGTGCTGTG GGATTTCTTGGTTCAAATTTGTTTGTGAGGAGGATCTACAGAAATATCAAGTGCGATTAA
CDS sequence (LotjaGi4g1v0388000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGATCTACCTTTGTGGGGATATGTTGGTGAACTGCATCCTGATAAAAATAGTGATAATGGCAAGCATGTCCTTTA CACACACAAGAATATTATTGTTAAATACAACAACGATCAGATTATTCATGTTAATCTCACTCAAGATGTCCCAAGGCCTT TGGAGGCAGGGAAACGTTTGGACATGACATATTCTGTCAAGTGGATTTCTACTAATGTAACTTTTGGACGTCGCTTTGAT GTCTACCTGGACTACCCTTTCTTTGAGCATCAGATCCATTGGTTCTCCATTTTTAACTCTTTCATGATGGTCATCTTCCT TACTGGATTGGTGTCAATGATATTAATGCGAACTCTGAGAAATGACTATGCAAAATATGCTCGGGAAGATGATGATTTGG AAACTCTGGAGAGAGATGTTAGTGAAGAGTCGGGCTGGAAACTTGTGCATGGTGATGTTTTTCGGCCTCCTCGCTATTTA GTTATTCTTTCAGCTGTTGTTGGCACAGGTGCACAGCTAGCATTGCTGATTCTTCTTGTTATCTTGTTGGCTATTGTTGG GATGTTGTATGTCGGGCGTGGAGCAATTGTCACAACCTTTATTGTTTGTTATGCTCTCACATCATTCATTTCTGGTTATG TGAGTGGGGGAATGTACTCGCGAAATGGGGGTAAAAGCTGGATTAAATCCATGATCCTTACAGCTTCTATGTTCCCATTC ATGTGCTTTGGAATCGGCTTTGTCTTGAACACAATTGCTATATTCTATGGCTCTCTAGCAGCAATCCCATTTGGCACAAT GGTGGTTGTTTTTGTCATTTGGGCTTTCATCTCTTTCCCTCTAGCACTTTTAGGCACAGTTGTTGGAAGAAACTTTAGCG GTGCTCCAAATAATCCTTGTCGTGTAAAGACTATTCCTCGTCCCATTCCTGAGAAGAAGTGGTACCTCACACCCTCAGTG GTTTCTCTTATGGGAGGACTGTTACCTTTTGGCAGCATATTCATTGAAATGTATTTCGTATTTACTTCCTTCTGGAATTA CAAGGTGTACTATGTGTATGGATTTATGCTACTGGTTTTTCTGATCCTGGTCATTGTTACTGTTTGTGTGACAATTGTGG GGACTTACTTTTTGTTAAATGCTGAGAACTACCACTGGCAATGGACTTCTTTCTTTTCAGCTGCCTCGACAGCTGTTTAT GTGTATTTGTACTCGATATACTACTACTATGTCAAGACAAAGATGTCAGGCTTCTTCCAAACCAGCTTCTATTTTGGATA CACTTTGATGTTTTCTCTTGGACTAGGAATTTTATGCGGTGCTGTGGGATTTCTTGGTTCAAATTTGTTTGTGAGGAGGA TCTACAGAAATATCAAGTGCGATTAA
Protein sequence (LotjaGi4g1v0388000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDDLPLWGYVGELHPDKNSDNGKHVLYTHKNIIVKYNNDQIIHVNLTQDVPRPLEAGKRLDMTYSVKWISTNVTFGRRFD VYLDYPFFEHQIHWFSIFNSFMMVIFLTGLVSMILMRTLRNDYAKYAREDDDLETLERDVSEESGWKLVHGDVFRPPRYL VILSAVVGTGAQLALLILLVILLAIVGMLYVGRGAIVTTFIVCYALTSFISGYVSGGMYSRNGGKSWIKSMILTASMFPF MCFGIGFVLNTIAIFYGSLAAIPFGTMVVVFVIWAFISFPLALLGTVVGRNFSGAPNNPCRVKTIPRPIPEKKWYLTPSV VSLMGGLLPFGSIFIEMYFVFTSFWNYKVYYVYGFMLLVFLILVIVTVCVTIVGTYFLLNAENYHWQWTSFFSAASTAVY VYLYSIYYYYVKTKMSGFFQTSFYFGYTLMFSLGLGILCGAVGFLGSNLFVRRIYRNIKCD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 461 | 461 | 0.0 | – | |
| PANTHER | 1 | 461 | 461 | 0.0 | ||
| Pfam | 1 | 418 | 418 | 8.5E-145 | ||
| Phobius | 1 | 91 | 91 | - | – | |
| SUPERFAMILY | 92 | 292 | 201 | 5.89E-5 | ||
| Phobius | 92 | 115 | 24 | - | – | |
| TMHMM | 94 | 116 | 23 | - | – | |
| Phobius | 116 | 159 | 44 | - | – | |
| Phobius | 160 | 190 | 31 | - | – | |
| TMHMM | 163 | 185 | 23 | - | – | |
| Phobius | 191 | 195 | 5 | - | – | |
| TMHMM | 195 | 217 | 23 | - | – | |
| Phobius | 196 | 219 | 24 | - | – | |
| Phobius | 220 | 230 | 11 | - | – | |
| Phobius | 231 | 256 | 26 | - | – | |
| TMHMM | 238 | 260 | 23 | - | – | |
| Phobius | 257 | 267 | 11 | - | – | |
| Phobius | 268 | 293 | 26 | - | – | |
| TMHMM | 270 | 292 | 23 | - | – | |
| Phobius | 294 | 313 | 20 | - | – | |
| Phobius | 314 | 341 | 28 | - | – | |
| TMHMM | 320 | 342 | 23 | - | – | |
| Phobius | 342 | 352 | 11 | - | – | |
| Phobius | 353 | 379 | 27 | - | – | |
| TMHMM | 357 | 379 | 23 | - | – | |
| Phobius | 380 | 390 | 11 | - | – | |
| TMHMM | 386 | 408 | 23 | - | – | |
| Phobius | 391 | 411 | 21 | - | – | |
| Phobius | 412 | 422 | 11 | - | – | |
| TMHMM | 423 | 445 | 23 | - | – | |
| Phobius | 423 | 451 | 29 | - | – | |
| Phobius | 452 | 461 | 10 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi4g1v0388000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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