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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR004240
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 72 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 7.083s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0009989.1
n.a. PREDICTED: transmembrane 9 superfamily member 4-like [Glycine max] gi|356516998|ref|XP_003527177.1| chr0 4096996 4098039 -
3 domain predictions
1 GO term
Lj0g3v0075239.1
n.a. Transmembrane 9 superfamily member 3 [Aegilops tauschii] gi|475533418|gb|EMT08384.1| chr0 28522114 28522635 +
3 domain predictions
1 GO term
Lj0g3v0084459.1
n.a. PREDICTED: transmembrane 9 superfamily member 4-like [Cicer arietinum] gi|502134369|ref|XP_004502094.1| chr0 33597069 33600431 -
3 domain predictions
1 GO term
Lj0g3v0205689.1
n.a. PREDICTED: transmembrane 9 superfamily member 4-like [Glycine max] gi|356522474|ref|XP_003529871.1| chr0 102303120 102307188 -
3 domain predictions
1 GO term
Lj0g3v0304549.1
n.a. Transmembrane 9 superfamily member 3 [Aegilops tauschii] gi|475533418|gb|EMT08384.1| chr0 158632224 158632747 +
3 domain predictions
1 GO term
Lj1g3v1222480.1
n.a. endomembrane family protein 70 [Arabidopsis thaliana] gi|30683350|ref|NP_196645.2| chr1 14997794 14999809 -
3 domain predictions
1 GO term
Lj1g3v1814310.1
n.a. PREDICTED: transmembrane 9 superfamily member 4-like [Glycine max] gi|356507218|ref|XP_003522366.1| chr1 21990677 21991903 -
3 domain predictions
1 GO term
Lj1g3v1815320.1
n.a. PREDICTED: transmembrane 9 superfamily member 4-like [Glycine max] gi|356564007|ref|XP_003550248.1| chr1 21992407 21995335 -
3 domain predictions
1 GO term
Lj1g3v1815320.2
n.a. PREDICTED: transmembrane 9 superfamily member 4-like [Glycine max] gi|356514937|ref|XP_003526158.1| chr1 21997087 22001397 -
3 domain predictions
1 GO term
Lj1g3v4538780.1
n.a. Transmembrane 9 superfamily member 3 [Triticum urartu] gi|474208027|gb|EMS58779.1| chr1 53534654 53535177 +
3 domain predictions
1 GO term
Lj2g3v0632820.1
n.a. Transmembrane 9 superfamily protein member [Medicago truncatula] gi|357499551|ref|XP_003620064.1| chr2 9400047 9404228 -
3 domain predictions
1 GO term
Lj2g3v3339750.1
n.a. PREDICTED: transmembrane 9 superfamily member 4-like [Glycine max] gi|356501751|ref|XP_003519687.1| chr2 42836066 42837042 -
3 domain predictions
1 GO term
Lj2g3v3339760.1
n.a. PREDICTED: transmembrane 9 superfamily member 4-like [Cicer arietinum] gi|502134369|ref|XP_004502094.1| chr2 42837191 42837537 -
3 domain predictions
1 GO term
Lj3g3v2693070.1
n.a. PREDICTED: transmembrane 9 superfamily member 4-like [Cicer arietinum] gi|502156232|ref|XP_004510372.1| chr3 32844484 32847165 +
3 domain predictions
1 GO term
Lj3g3v2693080.1
n.a. PREDICTED: transmembrane 9 superfamily member 4-like [Glycine max] gi|356522474|ref|XP_003529871.1| chr3 32845868 32848743 +
3 domain predictions
1 GO term
Lj3g3v2994520.1
n.a. Transmembrane 9 superfamily member [Medicago truncatula] gi|357471659|ref|XP_003606114.1| chr3 37114002 37118543 -
3 domain predictions
1 GO term
Lj4g3v1983590.1
n.a. PREDICTED: transmembrane 9 superfamily member 4-like [Cicer arietinum] gi|502169718|ref|XP_004514671.1| chr4 27633447 27635857 +
3 domain predictions
1 GO term
Lj4g3v1983590.2
n.a. PREDICTED: transmembrane 9 superfamily member 4-like [Glycine max] gi|356564899|ref|XP_003550684.1| chr4 27633447 27635857 +
3 domain predictions
1 GO term
Lj4g3v2400990.1
n.a. Endomembrane protein 70 protein family isoform 2 [Theobroma cacao] gi|508709345|gb|EOY01242.1| chr4 33271738 33277721 +
3 domain predictions
1 GO term
Lj4g3v2436050.1
n.a. Transmembrane 9 superfamily protein member [Medicago truncatula] gi|357491811|ref|XP_003616193.1| chr4 33619387 33624041 +
3 domain predictions
1 GO term
Lj4g3v2690760.1
n.a. PREDICTED: transmembrane 9 superfamily member 3-like [Cicer arietinum] gi|502140364|ref|XP_004504187.1| chr4 36226330 36232862 -
3 domain predictions
1 GO term
Lj4g3v2692380.1
n.a. PREDICTED: transmembrane 9 superfamily member 3-like [Fragaria vesca subsp]. vesca] gi|470131221|ref|XP_004301495.1| chr4 36285135 36285537 -
2 domain predictions
1 GO term
Lj4g3v2692390.1
n.a. PREDICTED: transmembrane 9 superfamily member 3-like [Glycine max] gi|356511031|ref|XP_003524235.1| chr4 36285487 36290384 -
3 domain predictions
1 GO term
Lj6g3v0673200.1
n.a. Transmembrane 9 superfamily protein member [Medicago truncatula] gi|357466013|ref|XP_003603291.1| chr6 6687545 6688314 +
3 domain predictions
1 GO term
Lj6g3v1077860.1
n.a. PREDICTED: transmembrane 9 superfamily member 4-like [Glycine max] gi|356516998|ref|XP_003527177.1| chr6 12645176 12648520 -
3 domain predictions
1 GO term
Lj6g3v1093740.1
n.a. Transmembrane 9 superfamily member 3 [Aegilops tauschii] gi|475566649|gb|EMT15069.1| chr6 13512776 13514503 -
3 domain predictions
1 GO term
Lj6g3v2274750.1
n.a. PREDICTED: transmembrane 9 superfamily member 3-like [Glycine max] gi|356511031|ref|XP_003524235.1| chr6 26578617 26584985 +
3 domain predictions
1 GO term
LotjaGi1g1v0004100.1
n.a. Transmembrane 9 superfamily member; TAIR: AT4G12650.1 Endomembrane protein 70 protein family; Swiss-Prot: sp|F4JRE0|TMN12_ARATH Transmembrane 9 superfamily member 12; TrEMBL-Plants: tr|A0A151RZY8|A0A151RZY8_CAJCA Transmembrane 9 superfamily member; Found in the gene: LotjaGi1g1v0004100 LjG1.1_chr1 764588 770357 +
3 domain predictions
1 GO term
LotjaGi1g1v0004100.2
n.a. Transmembrane 9 superfamily member; TAIR: AT4G12650.1 Endomembrane protein 70 protein family; Swiss-Prot: sp|F4JRE0|TMN12_ARATH Transmembrane 9 superfamily member 12; TrEMBL-Plants: tr|A0A151RZY8|A0A151RZY8_CAJCA Transmembrane 9 superfamily member; Found in the gene: LotjaGi1g1v0004100 LjG1.1_chr1 764860 766955 +
3 domain predictions
1 GO term
LotjaGi1g1v0098400.1
n.a. Transmembrane 9 superfamily member; TAIR: AT2G01970.1 Endomembrane protein 70 protein family; Swiss-Prot: sp|Q9ZPS7|TMN3_ARATH Transmembrane 9 superfamily member 3; TrEMBL-Plants: tr|A0A0L9UX18|A0A0L9UX18_PHAAN Transmembrane 9 superfamily member; Found in the gene: LotjaGi1g1v0098400 LjG1.1_chr1 14976123 14987157 -
3 domain predictions
1 GO term
LotjaGi1g1v0098400.2
n.a. Transmembrane 9 superfamily member; TAIR: AT2G01970.1 Endomembrane protein 70 protein family; Swiss-Prot: sp|Q9ZPS7|TMN3_ARATH Transmembrane 9 superfamily member 3; TrEMBL-Plants: tr|A0A0L9UX18|A0A0L9UX18_PHAAN Transmembrane 9 superfamily member; Found in the gene: LotjaGi1g1v0098400 LjG1.1_chr1 14982800 14985816 -
3 domain predictions
1 GO term
LotjaGi1g1v0098400.3
n.a. Transmembrane 9 superfamily member; TAIR: AT2G01970.1 Endomembrane protein 70 protein family; Swiss-Prot: sp|Q9ZPS7|TMN3_ARATH Transmembrane 9 superfamily member 3; TrEMBL-Plants: tr|A0A0L9UX18|A0A0L9UX18_PHAAN Transmembrane 9 superfamily member; Found in the gene: LotjaGi1g1v0098400 LjG1.1_chr1 14982800 14986838 -
3 domain predictions
1 GO term
LotjaGi1g1v0098400.4
n.a. Transmembrane 9 superfamily member; TAIR: AT1G14670.1 Endomembrane protein 70 protein family; Swiss-Prot: sp|Q940S0|TMN2_ARATH Transmembrane 9 superfamily member 2; TrEMBL-Plants: tr|V7B7Y7|V7B7Y7_PHAVU Transmembrane 9 superfamily member; Found in the gene: LotjaGi1g1v0098400 LjG1.1_chr1 14982800 14986838 -
3 domain predictions
1 GO term
LotjaGi1g1v0377300.1
n.a. Transmembrane 9 superfamily member; TAIR: AT5G10840.1 Endomembrane protein 70 protein family; Swiss-Prot: sp|F4KIB2|TMN8_ARATH Transmembrane 9 superfamily member 8; TrEMBL-Plants: tr|A0A0L9UHB0|A0A0L9UHB0_PHAAN Transmembrane 9 superfamily member; Found in the gene: LotjaGi1g1v0377300 LjG1.1_chr1 85684316 85689288 -
3 domain predictions
1 GO term
LotjaGi1g1v0377300.2
n.a. Transmembrane 9 superfamily member; TAIR: AT5G10840.1 Endomembrane protein 70 protein family; Swiss-Prot: sp|F4KIB2|TMN8_ARATH Transmembrane 9 superfamily member 8; TrEMBL-Plants: tr|A0A0L9UHB0|A0A0L9UHB0_PHAAN Transmembrane 9 superfamily member; Found in the gene: LotjaGi1g1v0377300 LjG1.1_chr1 85684687 85695230 -
3 domain predictions
1 GO term
LotjaGi1g1v0377300.3
n.a. Transmembrane 9 superfamily member; TAIR: AT5G10840.1 Endomembrane protein 70 protein family; Swiss-Prot: sp|F4KIB2|TMN8_ARATH Transmembrane 9 superfamily member 8; TrEMBL-Plants: tr|A0A0L9UHB0|A0A0L9UHB0_PHAAN Transmembrane 9 superfamily member; Found in the gene: LotjaGi1g1v0377300 LjG1.1_chr1 85690330 85695455 -
3 domain predictions
1 GO term
LotjaGi1g1v0391100_LC.1
n.a. Transmembrane 9 superfamily member; TAIR: AT5G25100.1 Endomembrane protein 70 protein family; Swiss-Prot: sp|Q9C5N2|TMN9_ARATH Transmembrane 9 superfamily member 9; TrEMBL-Plants: tr|A0A151T065|A0A151T065_CAJCA Transmembrane 9 superfamily member; Found in the gene: LotjaGi1g1v0391100_LC LjG1.1_chr1 87512269 87517855 +
3 domain predictions
1 GO term
LotjaGi2g1v0186000.1
n.a. Transmembrane 9 superfamily member; TAIR: AT2G01970.1 Endomembrane protein 70 protein family; Swiss-Prot: sp|Q9ZPS7|TMN3_ARATH Transmembrane 9 superfamily member 3; TrEMBL-Plants: tr|G7KJN8|G7KJN8_MEDTR Transmembrane 9 superfamily member; Found in the gene: LotjaGi2g1v0186000 LjG1.1_chr2 61346081 61350786 -
3 domain predictions
1 GO term
LotjaGi3g1v0425500.1
n.a. Transmembrane 9 superfamily member; TAIR: AT3G13772.1 transmembrane nine 7; Swiss-Prot: sp|Q9LIC2|TMN7_ARATH Transmembrane 9 superfamily member 7; TrEMBL-Plants: tr|A0A072TLT0|A0A072TLT0_MEDTR Transmembrane 9 superfamily member; Found in the gene: LotjaGi3g1v0425500 LjG1.1_chr3 83508993 83513335 +
3 domain predictions
1 GO term
LotjaGi3g1v0425500.2
n.a. Transmembrane 9 superfamily member; TAIR: AT3G13772.1 transmembrane nine 7; Swiss-Prot: sp|Q9LIC2|TMN7_ARATH Transmembrane 9 superfamily member 7; TrEMBL-Plants: tr|I1KGC3|I1KGC3_SOYBN Transmembrane 9 superfamily member; Found in the gene: LotjaGi3g1v0425500 LjG1.1_chr3 83509808 83512813 +
3 domain predictions
1 GO term
LotjaGi3g1v0425500.3
n.a. Transmembrane 9 superfamily member; TAIR: AT3G13772.1 transmembrane nine 7; Swiss-Prot: sp|Q9LIC2|TMN7_ARATH Transmembrane 9 superfamily member 7; TrEMBL-Plants: tr|A0A072TLT0|A0A072TLT0_MEDTR Transmembrane 9 superfamily member; Found in the gene: LotjaGi3g1v0425500 LjG1.1_chr3 83509814 83512813 +
3 domain predictions
1 GO term
LotjaGi3g1v0425500.4
n.a. Transmembrane 9 superfamily member; TAIR: AT3G13772.1 transmembrane nine 7; Swiss-Prot: sp|Q9LIC2|TMN7_ARATH Transmembrane 9 superfamily member 7; TrEMBL-Plants: tr|I1KGC3|I1KGC3_SOYBN Transmembrane 9 superfamily member; Found in the gene: LotjaGi3g1v0425500 LjG1.1_chr3 83509927 83512813 +
3 domain predictions
1 GO term
LotjaGi3g1v0425500.5
n.a. Transmembrane 9 superfamily member; TAIR: AT3G13772.1 transmembrane nine 7; Swiss-Prot: sp|Q9LIC2|TMN7_ARATH Transmembrane 9 superfamily member 7; TrEMBL-Plants: tr|I1KGC3|I1KGC3_SOYBN Transmembrane 9 superfamily member; Found in the gene: LotjaGi3g1v0425500 LjG1.1_chr3 83509980 83512813 +
3 domain predictions
1 GO term
LotjaGi3g1v0477100.1
n.a. Transmembrane 9 superfamily member; TAIR: AT1G08350.2 Endomembrane protein 70 protein family; Swiss-Prot: sp|F4HW17|TMN5_ARATH Transmembrane 9 superfamily member 5; TrEMBL-Plants: tr|A0A0L9V6E1|A0A0L9V6E1_PHAAN Transmembrane 9 superfamily member; Found in the gene: LotjaGi3g1v0477100 LjG1.1_chr3 89359186 89369757 -
3 domain predictions
1 GO term
LotjaGi4g1v0283200.1
n.a. Transmembrane 9 superfamily member; TAIR: AT5G35160.2 Endomembrane protein 70 protein family; Swiss-Prot: sp|Q9FYQ8|TMN11_ARATH Transmembrane 9 superfamily member 11; TrEMBL-Plants: tr|A0A151R0K2|A0A151R0K2_CAJCA Transmembrane 9 superfamily member; Found in the gene: LotjaGi4g1v0283200 LjG1.1_chr4 65516152 65519142 +
3 domain predictions
1 GO term
LotjaGi4g1v0283200.2
n.a. Transmembrane 9 superfamily member; TAIR: AT5G35160.2 Endomembrane protein 70 protein family; Swiss-Prot: sp|Q9FYQ8|TMN11_ARATH Transmembrane 9 superfamily member 11; TrEMBL-Plants: tr|A0A151R0K2|A0A151R0K2_CAJCA Transmembrane 9 superfamily member; Found in the gene: LotjaGi4g1v0283200 LjG1.1_chr4 65516585 65518815 +
3 domain predictions
1 GO term
LotjaGi4g1v0283200.3
n.a. Transmembrane 9 superfamily member; TAIR: AT5G35160.2 Endomembrane protein 70 protein family; Swiss-Prot: sp|Q9FYQ8|TMN11_ARATH Transmembrane 9 superfamily member 11; TrEMBL-Plants: tr|A0A151R0K2|A0A151R0K2_CAJCA Transmembrane 9 superfamily member; Found in the gene: LotjaGi4g1v0283200 LjG1.1_chr4 65516585 65519077 +
3 domain predictions
1 GO term
LotjaGi4g1v0283200.4
n.a. Transmembrane 9 superfamily member; TAIR: AT5G35160.2 Endomembrane protein 70 protein family; Swiss-Prot: sp|Q9FYQ8|TMN11_ARATH Transmembrane 9 superfamily member 11; TrEMBL-Plants: tr|A0A151R0K2|A0A151R0K2_CAJCA Transmembrane 9 superfamily member; Found in the gene: LotjaGi4g1v0283200 LjG1.1_chr4 65516590 65518815 +
3 domain predictions
1 GO term
LotjaGi4g1v0283200.5
n.a. Transmembrane 9 superfamily member; TAIR: AT5G35160.2 Endomembrane protein 70 protein family; Swiss-Prot: sp|Q9FYQ8|TMN11_ARATH Transmembrane 9 superfamily member 11; TrEMBL-Plants: tr|A0A151R0K2|A0A151R0K2_CAJCA Transmembrane 9 superfamily member; Found in the gene: LotjaGi4g1v0283200 LjG1.1_chr4 65516772 65518815 +
3 domain predictions
1 GO term
LotjaGi4g1v0283200.6
n.a. Transmembrane 9 superfamily member; TAIR: AT5G35160.1 Endomembrane protein 70 protein family; Swiss-Prot: sp|Q9FYQ8|TMN11_ARATH Transmembrane 9 superfamily member 11; TrEMBL-Plants: tr|A0A1J7GHF0|A0A1J7GHF0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0283200 LjG1.1_chr4 65516842 65518815 +
3 domain predictions
1 GO term