Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0389400 |
| Transcript ID | LotjaGi4g1v0389400.3 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | UDP-glucose 4-epimerase, putative; TAIR: AT1G30620.1 NAD(P)-binding Rossmann-fold superfamily protein; Swiss-Prot: sp|Q9SA77|ARAE1_ARATH UDP-arabinose 4-epimerase 1; TrEMBL-Plants: tr|G7L9K1|G7L9K1_MEDTR UDP-D-glucose/UDP-D-galactose 4-epimerase; Found in the gene: LotjaGi4g1v0389400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:76773434..76777569) extracted from Lotus japonicus Gifu genome v1.2.
AGGTCCAGAAGTCAAGCAAGGGCAACTAGACCTACAACAATGGGAAGTAAGATTTTGTCTTTCTTCTTCTCCCCTCTAGG CTTAAACTTGGGTACTTATAGTATTATAGCATGTTTGGAAATCCTTCTACACTTGATTCTAACGTCAAAATCAAATGCGG AGAAGCTGTTGTGAGTAGCTTCTGAGTGCTAGGATTGATTCTGAGGATACATTGGGTCCAGAAGTCTGACATCTTATTGG TGTTTGAAAATGAAGTTTCTCACATTTATGTTGTTCTTTCTTCTAGGCATGGATTATGTGGATCAAAAAAGGAAGGGCAA CTTTGTTGGAAAAGTTTTTCTTGCTGCAGCATTAACGACTCTATGCATAATCATGATCAGGAGATCTCCATCTCTGAATT CCCCCAGTCCGGTAATCCTCCATGACAATGGCCAATCATTAAAATGTGCACTCCTTAACAATGGCCAACCACTATATATG TGTGTGCATCACTGCATCTGTTATGTCTGTTGCATCTGTAGGTTAAGGTTGTACTGTTTATTGAGCTGGGAAGATATAGG GATAGAGCCTGTTATGCATGTAAATACAATGTTTCTTGACAGCAATAATCTATCACATTTTATTCGATCATGTAGGATCT AATAAAAGACATCTATTAGGCCATAGATCTTAGAGATCTGATGCATAGTGAGGCCATGTGGTATAAGGCTTGATTGTTAT TGTTGTTCAATGTGATTTCTGTATAGATCATTTTTTGCACGCCAATTTATGGGTAGAGAAGGGAGTCACACTAATGTGTT CATGTTGAGTTAACTGAAGTTATCAAATGTATTTTAGTTTCCATCTTTCTACTTGTGCATGGTTAATATTGAAATGTCAG AAGATAACACTTTTTGGGTAATTCTTATGAGAGCTGTATTCTTTAACAGTTAAGTAGGTTCAATCCATTTTTTTTGGCTT TTTATTGTCACCTATTGAAAGATGCCCTAAAATGGTAGATCTATGATACAAAAATACTATTTCTTACCATTTATTCAGCT AAAGAATGAAGCTTGGGTACGTTTAGTTGGTGTTTGCCAGTGCTGTCAGAAAGATACCACCAAGATAGAAATAGATTAGA GGTGAAAAGATAGAGGTAGGTTTTATATGTATGCATGAATTAGAGGTGTTAGTTACTATGGTGTTCGTTACTTATGGACC TAACTCTTGTGCGGTTTCTCTTTTATTCATCTTGCTGATTCTTCTTTTCTATTTTTCGTTTCCCCCTTTTCAGTTTTCCG TCCATGAACCCGGGGTCACTCATGTTTTAGTAACAGGGGGTGCAGGCTTTATTGGCTCACACGCAGCTCTACGACTTCTC AAGGATAACTATCGTGTTACCATAGTAGTATGTCTATTTATTAAATGGACTGGTTCTCTGTTAAAGCCAATTGCACTGAT TGATGTGGTTGCTACAAAGATAACAAATTTTCTTTATGACAGGACAATCTTTCACGAGGAAATTTGGGTGCAGTCAGGGT TCTCCAAAACTTATTTCCAGAACCTGGAAGGCTTCAATTCATATACGCTGACTTGGGAGATGCAAAATCTGTATCCTTTA CACTTTTGTTACAAGAAATGTTTTGGTTTCACACTTTTACTTTTATTGGTGCATATATAGGCCTAGAAAGATTGTTTACT TGACTGGTTATCAGGTTAATAAAATATTTTTGGAGAACAAATTTGATGCTGTGATGCACTTTGCTGCTGTTGCATATGTG GGAGAAAGCACTGTGGATCCTCTGAAGTAAGTGCTTCTGGATTTTGTTCAGGCATGTTAATTTTAGTTGAATAAAATTGT GGAAAGTTGCACTTTGCTCAGTTTCACTATCTATATCTAAGTAGCAAATCACATAGTACAAGTTGACATGTTGTAGATTA TTTGAACTCAGGTACAGATATTTCTAATATATTCTTGCATTTGTCTATAAAGTGACGCGTCGGGGCACATAAATTGTGAT GCATGATGTCTGTATTTCTTAATATATTGGTTAAATATTGAGTTTTTTATTTAGAGTTCTTCATTGTGGATAAGAGCTAC TAATACAAACCAAGCTTAGTTGTTGATATTATGTTTGCAATTGCAATGAGTACCAGACTAGTAACACATAGTAAGACCAT TTTCTAAAATTACCTTATCAAGAGGGTCAAAAGCTGCAAGTGAAATCACAGTACTGTTGCAACCAAATTCAGGTTTTTCT TTGAGAGTATGCCCGTATTCTCCACTCTAATGAATGCATTATGCAATTGATATTGTTTGTAATTAACTAGTTATGATTTA GTTGAGAGTTTGATCCAATTCTAGTTACGTGAGTGGTCTGGAATGGTTTGGTTTCATTTGCCTCAGTTTTATTATGATAT TTATTTAATTTATTTCTAATTTTCATATTTGTCAGGTATTATCACAATATTACATCAAATACCTTGTTGGTATTGGAGTC AATGGCCAAACATGATGTGAAGACATTGATCTATTCAAGTACATGTGCAACATATGGGGAACCTGAGAAGATGCCTATTA CAGAAGAAACACCGCAGGTAGGAAATTTTGTTTTTTTTTTTCCCTTGTATCCTGAATTAGCTTAATGCCTGTGGAGATTT AGTTTTAAAATTGATTTTCTTTTTCTATATATCAGTCCCCCATCAATCCATATGGGAAAGCCAAGAAAATGGCTGAAGAT ATCATCCTTGATTTTTCTAAAAATTCAGACATGGCAGTAATGATTCTAAGGTTTGTCTTTTACATCTATATTTTCCCTTC ATTTCAGATATTATCATTATCTAATTCCATATTCCTTTTGTTGCTTAAGCTATGAGTGGTTCTTATTATATCTGAAATAT TAAGAGCTCTTGCAAAAGGGTGCCATGTTTGTGCTATGGATGCATTCAATCAATACACATTTCTCTTTGATTTCTCTTTT TCCCTCATTTTTAAATGTTGTGTGGTCAGGTGTGTTGGGAAGATTTTATGGAGTCCCCGGACTCATTTATTTGCATCTAC CAAAACAAAATAAATAACATTTTTACTTTTGTATCTAATTATCTATTGGTGTGACAACTTTCCACTTCATGTTCTTTTAA CTGTTGATATACATTTTGAGATCTGACTACTTTTGGAAAGATGCCATTGGAACTTGATAATATTTCTGAATTAGCTACAC TGAATTACTGATAATTATTGGTAATTTTCTTTTTAAAACCACCAGATACTTTAATGTGATTGGATCAGATCCTGAGGGAA GATTGGGTGAGGCTCCTAGACCTGAACTGCGAGAGCAAGGTCGGATATCAGGTGCCTGCTTTGATGCGGCTCGTGGCATT ATACCAGGCTTAAAGGTATGCTAATGTTTTCGCTTTGTTTTTTTTGGCTAGAAAAGGATTCTTCACAGAAATCAAGGATT ACAAGAATCGGTGTTGTTAAGGCGATTAGCAGGGTATATTTGATGTGTTTCTAGGAGAACCAGTAAGAGGCAACTAGTTA AATGCTATATTGTCCAGAGTTATCAAACTATTGATAATTCTTCTATTTTCCATACATTTGACCTAGAGGAGCAGACTACA AGACAAATAATATCAAATGTAAGAAGTTCTTGAAAGTTGAAAGTGTTGTTACTTTGCAGGTTAGAGGAACAGACTATAAG ACAAGTGATGGAACTTGCATACGAGATTACATTGATGTGACTGACCTTGTTGATGCTCATGTGAAAGCTCTTGAAAAGGC ACAACCTAGTAAAGTTGGGATCTACAATGTTGGCACTGGAAAGGGTAGGTTAAATAAACACTTTGATTATGAACATAGTG CATTGATTTTCTTAACTTTGCATATTTCTTAAATTAACTGGTTCTTCTGTTTACCAGGTAGTTCAGTGAAGGAGTTTGTG GAAGCTTGCAAGAAGGCTACAGGGGTGGACATTAAAGTGGAATTCCTTCCTCGCCGTCCCGGTGATTACGCTGAGGTGTA TAGTGACCCGGAAAAGATCAAACGCGAACTGAATTGGACTGCAAAGCACATTGTTCTTCAAGAGAGTTTAGGGATTGCAT GGAGATGGCAGAAATCACACCGTGATGGTTATGGGGTTTCAAATGCAGTAGTTTGA
CDS sequence (LotjaGi4g1v0389400.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAGCATGGATTATGTGGATCAAAAAAGGAAGGGCAACTTTGTTGGAAAAGTTTTTCTTGCTGCAGCATTAACGAC TCTATGCATAATCATGATCAGGAGATCTCCATCTCTGAATTCCCCCAGTCCGTTTTCCGTCCATGAACCCGGGGTCACTC ATGTTTTAGTAACAGGGGGTGCAGGCTTTATTGGCTCACACGCAGCTCTACGACTTCTCAAGGATAACTATCGTGTTACC ATAGTAGACAATCTTTCACGAGGAAATTTGGGTGCAGTCAGGGTTCTCCAAAACTTATTTCCAGAACCTGGAAGGCTTCA ATTCATATACGCTGACTTGGGAGATGCAAAATCTGTTAATAAAATATTTTTGGAGAACAAATTTGATGCTGTGATGCACT TTGCTGCTGTTGCATATGTGGGAGAAAGCACTGTGGATCCTCTGAAGTATTATCACAATATTACATCAAATACCTTGTTG GTATTGGAGTCAATGGCCAAACATGATGTGAAGACATTGATCTATTCAAGTACATGTGCAACATATGGGGAACCTGAGAA GATGCCTATTACAGAAGAAACACCGCAGTCCCCCATCAATCCATATGGGAAAGCCAAGAAAATGGCTGAAGATATCATCC TTGATTTTTCTAAAAATTCAGACATGGCAGTAATGATTCTAAGGTGTGTTGGGAAGATTTTATGGAGTCCCCGGACTCAT TTATTTATACTTTAA
Protein sequence (LotjaGi4g1v0389400.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSMDYVDQKRKGNFVGKVFLAAALTTLCIIMIRRSPSLNSPSPFSVHEPGVTHVLVTGGAGFIGSHAALRLLKDNYRVT IVDNLSRGNLGAVRVLQNLFPEPGRLQFIYADLGDAKSVNKIFLENKFDAVMHFAAVAYVGESTVDPLKYYHNITSNTLL VLESMAKHDVKTLIYSSTCATYGEPEKMPITEETPQSPINPYGKAKKMAEDIILDFSKNSDMAVMILRCVGKILWSPRTH LFIL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 14 | 14 | - | – | |
| TMHMM | 13 | 35 | 23 | - | – | |
| Phobius | 15 | 33 | 19 | - | – | |
| PANTHER | 26 | 233 | 208 | 6.8E-121 | – | |
| PANTHER | 26 | 233 | 208 | 6.8E-121 | – | |
| Phobius | 34 | 52 | 19 | - | – | |
| TMHMM | 50 | 72 | 23 | - | – | |
| Phobius | 53 | 73 | 21 | - | – | |
| SUPERFAMILY | 54 | 230 | 177 | 5.23E-49 | ||
| Gene3D | 55 | 231 | 177 | 2.0E-60 | – | |
| Pfam | 56 | 230 | 175 | 1.0E-41 | ||
| Phobius | 74 | 244 | 171 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0389400.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…