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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR016040
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 582 results. Now displaying 1 of 12 with 50 rows per page. This search has taken 5.526s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj1g3v5061360.1
LjCastor RecName: Full=Ion channel CASTORgi|58430443|dbj|BAD89019.1| ion channel [Lotus japonicus] gi|62286596|sp|Q5H8A6.1|CASTO_LOTJA chr1 62096491 62107149 +
2 domain predictions
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Lj6g3v2275020.1
LjPollux RecName: Full=Ion channel POLLUXgi|58430445|dbj|BAD89020.1| ion channel [Lotus japonicus] gi|62287141|sp|Q5H8A5.1|POLLU_LOTJA chr6 26694056 26700672 -
3 domain predictions
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Lj0g3v0004249.1
n.a. PREDICTED: chlorophyll(ide) b reductase NOL, chloroplastic-like [Glycine max] gi|356556680|ref|XP_003546651.1| chr0 1497377 1505015 -
3 domain predictions
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Lj0g3v0006049.1
n.a. PREDICTED: L-idonate 5-dehydrogenase-like [Fragaria vesca subsp]. vesca] gi|470144985|ref|XP_004308125.1| chr0 2279022 2286069 +
3 domain predictions
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Lj0g3v0018979.1
n.a. PREDICTED: UDP-glucuronate 4-epimerase 5-like [Cicer arietinum] gi|502175956|ref|XP_004515772.1| chr0 7501168 7502433 +
3 domain predictions
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Lj0g3v0019009.1
n.a. PREDICTED: UDP-glucuronate 4-epimerase 5-like [Cicer arietinum] gi|502175956|ref|XP_004515772.1| chr0 7502435 7502657 +
2 domain predictions
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Lj0g3v0023479.1
n.a. PREDICTED: probable trans-2-enoyl-CoA reductase, mitochondrial-like isoform X1 [Cicer arietinum] gi|502082078|ref|XP_004487059.1| chr0 9375308 9378821 -
3 domain predictions
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Lj0g3v0024229.1
n.a. PREDICTED: probable rhamnose biosynthetic enzyme 1-like [Glycine max] gi|356525600|ref|XP_003531412.1| chr0 9650262 9669501 +
4 domain predictions
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Lj0g3v0024229.2
n.a. PREDICTED: probable rhamnose biosynthetic enzyme 1-like [Glycine max] gi|356525600|ref|XP_003531412.1| chr0 9650262 9653325 +
4 domain predictions
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Lj0g3v0024229.3
n.a. PREDICTED: probable rhamnose biosynthetic enzyme 1-like [Glycine max] gi|356556634|ref|XP_003546628.1| chr0 9665971 9669501 +
4 domain predictions
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Lj0g3v0024519.1
n.a. pinoresinol-lariciresinol reductase homolog [Lotus japonicus] gi|116077988|dbj|BAF34845.1| chr0 9773259 9775297 +
3 domain predictions
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Lj0g3v0045219.1
n.a. PREDICTED: NADH dehydrogenase [ubiquinone] gi|225437963|ref|XP_002271401.1| chr0 14846365 14852464 -
3 domain predictions
 –
Lj0g3v0045929.1
n.a. PREDICTED: cinnamoyl-CoA reductase 1-like [Cicer arietinum] gi|502100302|ref|XP_004491683.1| chr0 15107772 15110813 -
3 domain predictions
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Lj0g3v0045959.1
n.a. PREDICTED: cinnamoyl-CoA reductase 1-like [Cicer arietinum] gi|502100302|ref|XP_004491683.1| chr0 15112800 15115284 -
3 domain predictions
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Lj0g3v0047069.1
n.a. PREDICTED: UDP-glucose 4-epimerase GEPI48-like [Cicer arietinum] gi|502159740|ref|XP_004511515.1| chr0 15702901 15706938 +
4 domain predictions
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Lj0g3v0050139.1
n.a. Alcohol dehydrogenase-like protein [Medicago truncatula] gi|357520233|ref|XP_003630405.1| chr0 17005895 17008797 +
3 domain predictions
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Lj0g3v0055279.1
n.a. PREDICTED: zeta-carotene desaturase, chloroplastic/chromoplastic-like isoform X1 [Cicer arietinum] gi|502117333|ref|XP_004495784.1| chr0 17810891 17822168 -
2 domain predictions
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Lj0g3v0062349.1
n.a. PREDICTED: alcohol dehydrogenase-like 7-like [Cicer arietinum] gi|502134046|ref|XP_004501981.1| chr0 20929439 20945266 -
3 domain predictions
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Lj0g3v0062349.2
n.a. PREDICTED: alcohol dehydrogenase-like 7-like [Cicer arietinum] gi|502134046|ref|XP_004501981.1| chr0 20946633 20950022 -
3 domain predictions
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Lj0g3v0063259.1
n.a. PREDICTED: 3-oxoacyl-[acyl]-carrier-protein] gi|356500313|ref|XP_003518977.1| chr0 21408667 21409614 -
3 domain predictions
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Lj0g3v0067359.1
n.a. PREDICTED: d-3-phosphoglycerate dehydrogenase, chloroplastic-like [Glycine max] gi|356521735|ref|XP_003529507.1| chr0 23894504 23898568 -
3 domain predictions
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Lj0g3v0067389.1
n.a. pinoresinol-lariciresinol reductase homolog [Lotus japonicus] gi|116077990|dbj|BAF34846.1| chr0 23918993 23921836 +
2 domain predictions
 –
Lj0g3v0067539.1
n.a. Short-chain alcohol dehydrogenase [Medicago truncatula] gi|357497085|ref|XP_003618831.1| chr0 23996022 23998010 -
3 domain predictions
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Lj0g3v0071329.1
n.a. PREDICTED: alcohol dehydrogenase class-3-like [Cicer arietinum] gi|502114773|ref|XP_004495047.1| chr0 26112440 26116661 -
3 domain predictions
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Lj0g3v0074609.1
n.a. 3-ketoacyl-CoA reductase [Medicago truncatula] gi|357518603|ref|XP_003629590.1| chr0 28126111 28131008 +
3 domain predictions
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Lj0g3v0074759.1
n.a. RHM1 [Zea mays] gi|226503239|ref|NP_001151455.1| chr0 28291614 28291973 -
4 domain predictions
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Lj0g3v0075949.2
n.a. Dihydroflavonol-4-reductase [Medicago truncatula] gi|357516625|ref|XP_003628601.1| chr0 28892735 28895982 +
3 domain predictions
 –
Lj0g3v0075949.3
n.a. PREDICTED: cinnamoyl-CoA reductase 1-like isoform X1 [Cicer arietinum] gi|502154963|ref|XP_004509912.1| chr0 28892735 28900586 +
3 domain predictions
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Lj0g3v0075959.1
n.a. PREDICTED: cinnamoyl-CoA reductase 1-like isoform X1 [Cicer arietinum] gi|502154963|ref|XP_004509912.1| chr0 28897285 28904798 +
3 domain predictions
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Lj0g3v0075959.4
n.a. PREDICTED: cinnamoyl-CoA reductase 1-like isoform X1 [Cicer arietinum] gi|502154963|ref|XP_004509912.1| chr0 28902133 28904798 +
3 domain predictions
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Lj0g3v0078409.1
n.a. PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase-like 3, mitochondrial-like [Fragaria vesca subsp]. vesca] gi|470127985|ref|XP_004299936.1| chr0 30183582 30184972 +
3 domain predictions
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Lj0g3v0079449.1
n.a. PREDICTED: (+)-pulegone reductase-like [Glycine max] gi|356543702|ref|XP_003540299.1| chr0 30732988 30735498 +
3 domain predictions
 –
Lj0g3v0084549.1
n.a. PREDICTED: LOW QUALITY PROTEIN: (+)-pulegone reductase-like [Glycine max] gi|356524585|ref|XP_003530909.1| chr0 33643083 33647725 +
3 domain predictions
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Lj0g3v0084559.1
n.a. PREDICTED: (+)-pulegone reductase-like, partial [Cucumis sativus] gi|449533987|ref|XP_004173951.1| chr0 33645655 33648803 +
3 domain predictions
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Lj0g3v0085839.1
n.a. PREDICTED: (+)-pulegone reductase-like [Glycine max] gi|356543702|ref|XP_003540299.1| chr0 34469982 34471324 +
3 domain predictions
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Lj0g3v0090049.1
n.a. Glutamyl-tRNA reductase [Medicago truncatula] gi|357466815|ref|XP_003603692.1| chr0 37032367 37034357 -
3 domain predictions
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Lj0g3v0090059.1
n.a. Glutamyl-tRNA reductase [Medicago truncatula] gi|357466815|ref|XP_003603692.1| chr0 37032655 37034357 -
3 domain predictions
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Lj0g3v0091119.1
n.a. PREDICTED: xanthoxin dehydrogenase-like [Glycine max] gi|356541534|ref|XP_003539230.1| chr0 37681139 37683737 +
3 domain predictions
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Lj0g3v0095029.1
n.a. PREDICTED: dehydrogenase/reductase SDR family member on chromosome X-like [Glycine max] gi|356509283|ref|XP_003523380.1| chr0 40004782 40009163 +
3 domain predictions
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Lj0g3v0098679.1
n.a. PREDICTED: probable rhamnose biosynthetic enzyme 1-like [Glycine max] gi|356567412|ref|XP_003551914.1| chr0 41818471 41818830 +
4 domain predictions
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Lj0g3v0101099.1
n.a. Dimethylaniline monooxygenase [Medicago truncatula] gi|357436843|ref|XP_003588697.1| chr0 42816185 42818337 -
2 domain predictions
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Lj0g3v0101659.1
n.a. PREDICTED: 3-oxoacyl-[acyl]-carrier-protein] gi|502135409|ref|XP_004502323.1| chr0 43161364 43162332 -
3 domain predictions
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Lj0g3v0101689.1
n.a. (+)-neomenthol dehydrogenase [Medicago truncatula] gi|357489423|ref|XP_003614999.1| chr0 43172819 43174227 -
3 domain predictions
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Lj0g3v0102449.1
n.a. PREDICTED: fatty acyl-CoA reductase 3-like [Glycine max] gi|356543580|ref|XP_003540238.1| chr0 43598434 43600839 -
3 domain predictions
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Lj0g3v0102829.1
n.a. PREDICTED: NADP-specific glutamate dehydrogenase-like [Glycine max] gi|356526047|ref|XP_003531631.1| chr0 43755482 43766450 +
3 domain predictions
 –
Lj0g3v0102829.2
n.a. PREDICTED: NADP-specific glutamate dehydrogenase-like [Glycine max] gi|356526047|ref|XP_003531631.1| chr0 43755482 43766450 +
3 domain predictions
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Lj0g3v0105409.1
n.a. PREDICTED: glyceraldehyde-3-phosphate dehydrogenase, cytosolic-like [Cicer arietinum] gi|502135422|ref|XP_004502328.1| chr0 45209231 45212151 +
3 domain predictions
 –
Lj0g3v0113569.1
n.a. Fatty acyl-CoA reductase [Medicago truncatula] gi|357491041|ref|XP_003615808.1| chr0 49652847 49655061 +
3 domain predictions
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Lj0g3v0115149.1
n.a. PREDICTED: SUMO-activating enzyme subunit 2-like [Glycine max] gi|356544157|ref|XP_003540521.1| chr0 50570415 50578146 +
2 domain predictions
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Lj0g3v0120549.1
n.a. PREDICTED: glucose-6-phosphate 1-dehydrogenase, chloroplastic-like [Glycine max] gi|356499687|ref|XP_003518668.1| chr0 53544543 53549486 -
3 domain predictions
 –