Transcript — View — Lotus Base

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LotjaGi4g1v0405800.6

Overview

Field	Value
Gene ID	LotjaGi4g1v0405800
Transcript ID	LotjaGi4g1v0405800.6
Related isoforms 6	LotjaGi4g1v0405800.1 LotjaGi4g1v0405800.2 LotjaGi4g1v0405800.3 LotjaGi4g1v0405800.4 LotjaGi4g1v0405800.5 LotjaGi4g1v0405800.7
Lotus japonicus genome version	Gifu v1.2
Description	26S proteasome non-ATPase regulatory subunit 12; TAIR: AT5G09900.1 26S proteasome regulatory subunit, putative (RPN5); Swiss-Prot: sp\|Q9FIB6\|PS12A_ARATH 26S proteasome non-ATPase regulatory subunit 12 homolog A; TrEMBL-Plants: tr\|I1K4U3\|I1K4U3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0405800
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr4:78210611..78212061) extracted from Lotus japonicus Gifu genome v1.2.

CTACTGAAATCCTTTGCAGGCGAATTTAGATTCGGCGATAGAGCAATTGCTGAATGTGGAGAAGCAGATGAGGCTCGCCG GTGACGTTTCCGGCACCAGGAAAGCCGCCACCGACATTCTGAAGCTCTGCTTTGATGCGCGAGCCTGGAAAACCCTAAAC GACCAGATTGTCGTTTTGTCCAAACGTCGTGGTCAGCTTAAGCAGGTAACTCCATTGAAGAACCTATTAGTTTTACTTGA ATCGCTTCTGTGTGCATAACGAGGTTGGGGTTTTAGTTCACTGGTTAAAAAATTGGGCGTTCTTTGTTCGTTTGGATTGG AAATTTGATTCATGATTATTTACATATGCATAGTAATTTCCTGTTAATGATTGGTAGAAATTTTGCTTAGAAAACCATGG GCATTGTGCTTGATTTGCGGTAACGAGTTAGAAAATGTATAGTTTCTTTATTTGAAATATCCTCACTGGTTTTGATTTCA CTATTTCTGAATAGTATGTGAGGACTTTTAGAATGTTACTCCTCTTTGCGTAGAGTTACATGGGATGAGGCTATAGATTC TTCAGTTCGTATATTATTATCTAGTTGCCTCGTAAATGGTAAGAGAAAGTGTGAAACATAGTATCATCTGGTATTAACGA GCCTATTATATGCTCACAGGCTGTAACAGCAATGGTCCAGCAGGCTATGCAATATATTGATGAGACACCGGACGTTGAAA CTCGTGTAGAACTCATCAAAACATTGAACAGTGTATCTGCCGGGAAGGTGAGCTGTTGTGATGTCTGAAGTCTCTGCCCT GTTTTATAATCCTTCAGGGCTGTATATTTGTCTCATATGACGTATGTTTTATATGGTGTTTTCTATGTTAGATATATGTT GAGATTGAGAGGGCTAGGTTGATCAAGAAACTTGCAAAGATTAAGGAAGAACAAGGGCTTATAGCTGAAGCAGCTGATTT GATGCAAGAAATTGCGGTCAGTGCGCACGCGTCGTATTTTGATGGCTTTTATACTTTTGGTTTTTGGATTTGACAGTTTG TACAAGTTGCTTTCAGTTGACTTAAGTTGGGTGATCTTAACAGGTGGAAACTTTTGGTGCCATGGCAAAAACTGAAAAGA TTGCATTCATCCTTGAACAAGTATGAGTCATTTTTCTCTTTGTTTCAGTTGTAACTGATAGAGATGGTAGACATTAATTT CTTCTGATGCAATTCAGTTGCTGATACGATAATAACTTCAAATTGTGTAGGTTCGTTTGTGCCTAGACCGACAGGATTAT GTCCGGGCACAAATACTCTCAAAAAAGATTAGTCCAAGAGTGTTTGCTGTTGATGCATCTAAGGAAAAGAAAAAGCCTAA AGATGGCGACAATCTTGTTGAAGAGGCTCCGGCAGATATACCATCTCTGCTAGAGTTGAAGCGGATCTATTATGAACTAA TGATTCGGTAA

Download Genomic Sequence

CDS sequence (LotjaGi4g1v0405800.6) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGGCTCGCCGGTGACGTTTCCGGCACCAGGAAAGCCGCCACCGACATTCTGAAGCTCTGCTTTGATGCGCGAGCCTG GAAAACCCTAAACGACCAGATTGTCGTTTTGTCCAAACGTCGTGGTCAGCTTAAGCAGGCTGTAACAGCAATGGTCCAGC AGGCTATGCAATATATTGATGAGACACCGGACGTTGAAACTCGTGTAGAACTCATCAAAACATTGAACAGTGTATCTGCC GGGAAGATATATGTTGAGATTGAGAGGGCTAGGTTGATCAAGAAACTTGCAAAGATTAAGGAAGAACAAGGGCTTATAGC TGAAGCAGCTGATTTGATGCAAGAAATTGCGGTGGAAACTTTTGGTGCCATGGCAAAAACTGAAAAGATTGCATTCATCC TTGAACAAGTTCGTTTGTGCCTAGACCGACAGGATTATGTCCGGGCACAAATACTCTCAAAAAAGATTAGTCCAAGAGTG TTTGCTGTTGATGCATCTAAGGAAAAGAAAAAGCCTAAAGATGGCGACAATCTTGTTGAAGAGGCTCCGGCAGATATACC ATCTCTGCTAGAGTTGAAGCGGATCTATTATGAACTAATGATTCGGTAA

Download CDS Sequence

Protein sequence (LotjaGi4g1v0405800.6) extracted from Lotus japonicus Gifu v1.2 Proteins.

MRLAGDVSGTRKAATDILKLCFDARAWKTLNDQIVVLSKRRGQLKQAVTAMVQQAMQYIDETPDVETRVELIKTLNSVSA GKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEIAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSKKISPRV FAVDASKEKKKPKDGDNLVEEAPADIPSLLELKRIYYELMIR

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR10855:SF3 View details on PTHR10855:SF3 Search for proteins/transripts with this domain View external data on PTHR10855:SF3	1	202	202	2.1E-102	–
PANTHER	PTHR10855 View details on PTHR10855 Search for proteins/transripts with this domain View external data on PTHR10855	1	202	202	2.1E-102	IPR040134 Show description in modal box View details on IPR040134 Search for proteins/transripts with this domain View on EBI InterPro Service
CDD	cd18798 View details on cd18798 Search for proteins/transripts with this domain View external data on cd18798	58	121	64	0.00794225	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0405800.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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