Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0405800 |
| Transcript ID | LotjaGi4g1v0405800.7 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 26S proteasome non-ATPase regulatory subunit 12; TAIR: AT5G09900.1 26S proteasome regulatory subunit, putative (RPN5); Swiss-Prot: sp|Q9FIB6|PS12A_ARATH 26S proteasome non-ATPase regulatory subunit 12 homolog A; TrEMBL-Plants: tr|A0A151TL96|A0A151TL96_CAJCA 26S proteasome non-ATPase regulatory subunit 12; Found in the gene: LotjaGi4g1v0405800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:78210611..78215181) extracted from Lotus japonicus Gifu genome v1.2.
CTACTGAAATCCTTTGCAGGCGAATTTAGATTCGGCGATAGAGCAATTGCTGAATGTGGAGAAGCAGATGAGGCTCGCCG GTGACGTTTCCGGCACCAGGAAAGCCGCCACCGACATTCTGAAGCTCTGCTTTGATGCGCGAGCCTGGAAAACCCTAAAC GACCAGATTGTCGTTTTGTCCAAACGTCGTGGTCAGCTTAAGCAGGTAACTCCATTGAAGAACCTATTAGTTTTACTTGA ATCGCTTCTGTGTGCATAACGAGGTTGGGGTTTTAGTTCACTGGTTAAAAAATTGGGCGTTCTTTGTTCGTTTGGATTGG AAATTTGATTCATGATTATTTACATATGCATAGTAATTTCCTGTTAATGATTGGTAGAAATTTTGCTTAGAAAACCATGG GCATTGTGCTTGATTTGCGGTAACGAGTTAGAAAATGTATAGTTTCTTTATTTGAAATATCCTCACTGGTTTTGATTTCA CTATTTCTGAATAGTATGTGAGGACTTTTAGAATGTTACTCCTCTTTGCGTAGAGTTACATGGGATGAGGCTATAGATTC TTCAGTTCGTATATTATTATCTAGTTGCCTCGTAAATGGTAAGAGAAAGTGTGAAACATAGTATCATCTGGTATTAACGA GCCTATTATATGCTCACAGGCTGTAACAGCAATGGTCCAGCAGGCTATGCAATATATTGATGAGACACCGGACGTTGAAA CTCGTGTAGAACTCATCAAAACATTGAACAGTGTATCTGCCGGGAAGGTGAGCTGTTGTGATGTCTGAAGTCTCTGCCCT GTTTTATAATCCTTCAGGGCTGTATATTTGTCTCATATGACGTATGTTTTATATGGTGTTTTCTATGTTAGATATATGTT GAGATTGAGAGGGCTAGGTTGATCAAGAAACTTGCAAAGATTAAGGAAGAACAAGGGCTTATAGCTGAAGCAGCTGATTT GATGCAAGAAATTGCGGTCAGTGCGCACGCGTCGTATTTTGATGGCTTTTATACTTTTGGTTTTTGGATTTGACAGTTTG TACAAGTTGCTTTCAGTTGACTTAAGTTGGGTGATCTTAACAGGTGGAAACTTTTGGTGCCATGGCAAAAACTGAAAAGA TTGCATTCATCCTTGAACAAGTATGAGTCATTTTTCTCTTTGTTTCAGTTGTAACTGATAGAGATGGTAGACATTAATTT CTTCTGATGCAATTCAGTTGCTGATACGATAATAACTTCAAATTGTGTAGGTTCGTTTGTGCCTAGACCGACAGGATTAT GTCCGGGCACAAATACTCTCAAAAAAGATTAGTCCAAGAGTGTTTGCTGTTGATGCATCTAAGGAAAAGAAAAAGCCTAA AGATGGCGACAATCTTGTTGAAGAGGCTCCGGCAGATATACCATCTCTGCTAGAGTTGAAGCGGATCTATTATGAACTAA TGATTCGGTAACTAATTCCTGCTTCTCGTTTTAATTGTATTTCTTACTCTATCATAATGTGGCTTACCCTTGTTTATCTG TTACCTCCTTCAATTTATTTGGTATAATAAACTGAGTGTCTAACAGATGCTCAAAATGATTCTAGTCTTGGGGCTTTCCT GTTTCAGTAACATTGAGGATATGTTTTGTTGCTAGCCTAATTATGAAAACCAAACAATGTTTGCAACTGGGTTCACCAGT ACCCACACTTGAGAGATGCACAAGAAGACATAATGCTAATGACTGTCTACCTGCAATACGTTCTAAAATGTGTTCATTGT CTATTAATCTCTCTTCTTTGCATTTGTTGAAGTTTTCTTCATCAATCATTTTAGTAATATAAGTGCAATTTTCCAAGTAT TTACTTTTAGTTCTTTAATTGGATTGGTGGTCCATAAGGAAAACTAATTTGTTGAAGGGTTGAATTGGCCTTGTCACTGA GTTTAAAACGTGAATAGAAGAGAGTGGATATGTACTAATCTGCTATGCATTGATGGATAGGTAGATTTGATTATAACAAA TATAAGTACTGATTTGCTTATATTTCTATGTGGTATATATTATGATACCCCTCTTTATAACACTTCCATATCATTGTGAA GAGTCTAGAGGCAAGCATGTGATTTGCAATTAGATGAAATGTGAAATGTTCAAATCCTACCACTGTTGAATTGAAAAGCT TGGGCCTAGGCTTGAAGGATTTTCCCTAGGAACACTTTAGTCTCGGTATTCATGCCTCATCTTTCACCAAACCAGCGAGG CGGACCAGTCAAGTTTCCTGCAAGCTGGTCTGAAAAAGATTTGACATGATATCAAATGAATATATGGATAAGGATGTGTA TTATAGTTGGAGTATTAATGCATTGTCAGTGTAAAACAGTTGTCTGACATCCAATCATGCTATGCCATGTAGGACCACAT TATAGGAGCAGTTATCTTTCTATTTATATAAATTAAAATAACAAATTATTTACTGTTTTGGGACTTTAAATCCTTAAAGT TGTTAATTTATTTAAAATGTGATATCTAACTGTCAATTATTAACTGGTAACCTCTTTTTGGTTCAGGTCAAATACATCCT ATTCTCTTACATACATTTTACATCTTAATCACCTATTTTCTTTCCAATTAAACTGATATTATGTTTTGTGTGTGTTCCCT TGCTTTATATTCTTTAACTAATTGACATCCCATTTCTTTACAATCATGAAATTAATCATTATGTTCTGCACAGTTTATAG TTCAAACATTTTGACATGATGCGAACTTTGATTGCCTCTTGGAATCGTATGAAATATGAATGCTAAAATCACATGAACTA GCTTGCAGTTTTTAGTTATCCTTCCTGAATTGTAGATTCTTGTGTTTTTTCAACTGCAAAGTCAAGACCTTTTTTTTTCT TTGCTAGTTCTGTAACTCCCATCTAGGTTCACACTATTGCATACCATGTACAGTGCTTATTCATCAATTGTCATTCATGC TGCCTTTGTAGCTGGGTCCTACTTTCCTTGGTCATTTCAATTGTATGTATTTGATATTTTTCTGTGTGTTTATGGGGATT GGTTTGTGATATGTGACTATAATAAAATGTAGTAAAACTTCATAATGGAGTCAAATATATTATGCACTGCTTTTCAAATT TGGTGCTATGCTTATTTACCACTTTCACAAATGGGGATTGATGTAGTCGAGTGCTTGTTTATTTTTACCTTCATGCTATA TGTTTTTCAAATACCTAATTGCTGCTAATCTTAAAATATTCATTGTCTAATGCTAATTTTTGTTTTTTTTTGGAAGGTAT TATTCCCATAACAATGATTATCTTGAAATTTGCCGTTGCTATAAGTCAATATATGAGATTCCATCTGTCAGAGAAAACCC TGCCGAGTGGATCCCAGTATGCTTTCTCTGTCTTTATTTGCACTTTCTGTTACTGCTAGGTTCTATTGTTCTATGATATA GTGTTTTTCTAAAAATTATCTTTACTTATAGATCCTGAGGAAAATATGTTGGTACTTGGTTCTATCGCCACATGATCCAA TGCAATCAAGCCTCCTTAATTCCACCTTGGAGGATAAGAATCTATCTGAGATTCCAAACTTCAAGTATGTTAATCCTATT TATATCTGATGTTTTCTTGGTGATGTTCAAGTATTTTGTTTGTAATTTCTTTTTTACTCGGTGTACCTGTTATATTCTGT GCTTAGGCTACTTTTGAAACAACTGGTCACAATGGAGGTCATCCAATGGACTACTCTTTGGGATACATATAAGAGTGAGT TTGAGAACGAGAAGGTCTCTGGGAAATCTTTGGATGAAAAAGCAGCCGAAGATTTAAAGCAAAGAATAATTGAACATGTA ATTGACTGATGTCTTTATATTTCTTTGTTCTCCTGACATCAATTTGGTTGTATTGTGGGATATGCTTTTATGTTGCACAC TTCTTTATGTGAGTATTTATAAGCATTATTTTTGTTTCTTTTCAGAATATTCTTGTCGTATCAAAATACTACGCCAGGAT TACAGTGAAGAGACTTGCCCAGCTTTTGTGTCTTAGTGTACAGGTTTGTAAAGCTAGTTGTGATATATGCTTTTTTGAAG TGCTTGTGTGGTAACTTTTAAATGGCTCATGGGCATATCCCCTAGTATCTGTCACTGGAGACTAGTGTTTCAAATAAAAA ATCTAGTTGGGGAGTTGTAGTTGACAGCGTATGTCTATGCTGTTGTGCTGCAGCAGTTCACTTGCCTCCTCCCATGGTTT ATTTTGTGGGTTATCATTGTGGATGTTGTAACTAAATTTATTTTACTTTGCTTCTTAAAATCATCTTAGTGATAATCCCA ACTAATTCTCCATATCTCCTTACAAAATTCAGGAAGCTGAGAAGCATCTATCAGATATGGTTGTGTCGAAGGCACTGATA GCAAAGATTGATAGGCCAAAGGGAATAGTGTGTTTCCAAACAGCGAAGGATAGCAATGATATTCTTAACTCATGGGCAGC AAACTTGGAGAAATTGCTTGATCTTGTGGAGAAAAGTTGTCATCAAATACACAAGGAAACCATGGTCCATAAAGCTGTCT TAAAGGTTTAA
CDS sequence (LotjaGi4g1v0405800.7) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGCTCGCCGGTGACGTTTCCGGCACCAGGAAAGCCGCCACCGACATTCTGAAGCTCTGCTTTGATGCGCGAGCCTG GAAAACCCTAAACGACCAGATTGTCGTTTTGTCCAAACGTCGTGGTCAGCTTAAGCAGGCTGTAACAGCAATGGTCCAGC AGGCTATGCAATATATTGATGAGACACCGGACGTTGAAACTCGTGTAGAACTCATCAAAACATTGAACAGTGTATCTGCC GGGAAGATATATGTTGAGATTGAGAGGGCTAGGTTGATCAAGAAACTTGCAAAGATTAAGGAAGAACAAGGGCTTATAGC TGAAGCAGCTGATTTGATGCAAGAAATTGCGGTGGAAACTTTTGGTGCCATGGCAAAAACTGAAAAGATTGCATTCATCC TTGAACAAGTTCGTTTGTGCCTAGACCGACAGGATTATGTCCGGGCACAAATACTCTCAAAAAAGATTAGTCCAAGAGTG TTTGCTGTTGATGCATCTAAGGAAAAGAAAAAGCCTAAAGATGGCGACAATCTTGTTGAAGAGGCTCCGGCAGATATACC ATCTCTGCTAGAGTTGAAGCGGATCTATTATGAACTAATGATTCGGTCAAATACATCCTATTCTCTTACATACATTTTAC ATCTTAATCACCTATTTTCTTTCCAATTAAACTGA
Protein sequence (LotjaGi4g1v0405800.7) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRLAGDVSGTRKAATDILKLCFDARAWKTLNDQIVVLSKRRGQLKQAVTAMVQQAMQYIDETPDVETRVELIKTLNSVSA GKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEIAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSKKISPRV FAVDASKEKKKPKDGDNLVEEAPADIPSLLELKRIYYELMIRSNTSYSLTYILHLNHLFSFQLN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 204 | 204 | 2.7E-103 | – | |
| PANTHER | 1 | 204 | 204 | 2.7E-103 | ||
| CDD | 58 | 121 | 64 | 0.00769864 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0405800.7, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…