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LotjaGi4g1v0405800.2

Overview

Field Value
Gene ID LotjaGi4g1v0405800
Transcript ID LotjaGi4g1v0405800.2
Related isoforms 6
Lotus japonicus genome version Gifu v1.2
Description 26S proteasome non-ATPase regulatory subunit; TAIR: AT5G09900.2 26S proteasome regulatory subunit, putative (RPN5); Swiss-Prot: sp|Q9FIB6|PS12A_ARATH 26S proteasome non-ATPase regulatory subunit 12 homolog A; TrEMBL-Plants: tr|V7CNL2|V7CNL2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0405800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:78210335..78215181) extracted from Lotus japonicus Gifu genome v1.2.

CTCTTCTCCACTCTCACACTTTTCCTTCCCTTTTCAATTTTCAATAGCTAGCGACTCGACTCGATCTCTCGCCCGCAACT CAACCATGGTATCTTCTTCTCGATCGATTCAATTCCAGATCTCACTCTGTTCTACTTCGTTTTCGTTAATTTCACTGTCA ATTCTGCATAACAATTGCTTCGTTTTGTTTATACTATTAGCATCTAGTTAGGGTTGTTAATTTTGTGTCTTCTCTGAACT GAAATTTCACGATTCCGGTCACCGGAACTGATTATTCTACTGAAATCCTTTGCAGGCGAATTTAGATTCGGCGATAGAGC AATTGCTGAATGTGGAGAAGCAGATGAGGCTCGCCGGTGACGTTTCCGGCACCAGGAAAGCCGCCACCGACATTCTGAAG CTCTGCTTTGATGCGCGAGCCTGGAAAACCCTAAACGACCAGATTGTCGTTTTGTCCAAACGTCGTGGTCAGCTTAAGCA GGTAACTCCATTGAAGAACCTATTAGTTTTACTTGAATCGCTTCTGTGTGCATAACGAGGTTGGGGTTTTAGTTCACTGG TTAAAAAATTGGGCGTTCTTTGTTCGTTTGGATTGGAAATTTGATTCATGATTATTTACATATGCATAGTAATTTCCTGT TAATGATTGGTAGAAATTTTGCTTAGAAAACCATGGGCATTGTGCTTGATTTGCGGTAACGAGTTAGAAAATGTATAGTT TCTTTATTTGAAATATCCTCACTGGTTTTGATTTCACTATTTCTGAATAGTATGTGAGGACTTTTAGAATGTTACTCCTC TTTGCGTAGAGTTACATGGGATGAGGCTATAGATTCTTCAGTTCGTATATTATTATCTAGTTGCCTCGTAAATGGTAAGA GAAAGTGTGAAACATAGTATCATCTGGTATTAACGAGCCTATTATATGCTCACAGGCTGTAACAGCAATGGTCCAGCAGG CTATGCAATATATTGATGAGACACCGGACGTTGAAACTCGTGTAGAACTCATCAAAACATTGAACAGTGTATCTGCCGGG AAGGTGAGCTGTTGTGATGTCTGAAGTCTCTGCCCTGTTTTATAATCCTTCAGGGCTGTATATTTGTCTCATATGACGTA TGTTTTATATGGTGTTTTCTATGTTAGATATATGTTGAGATTGAGAGGGCTAGGTTGATCAAGAAACTTGCAAAGATTAA GGAAGAACAAGGGCTTATAGCTGAAGCAGCTGATTTGATGCAAGAAATTGCGGTCAGTGCGCACGCGTCGTATTTTGATG GCTTTTATACTTTTGGTTTTTGGATTTGACAGTTTGTACAAGTTGCTTTCAGTTGACTTAAGTTGGGTGATCTTAACAGG TGGAAACTTTTGGTGCCATGGCAAAAACTGAAAAGATTGCATTCATCCTTGAACAAGTATGAGTCATTTTTCTCTTTGTT TCAGTTGTAACTGATAGAGATGGTAGACATTAATTTCTTCTGATGCAATTCAGTTGCTGATACGATAATAACTTCAAATT GTGTAGGTTCGTTTGTGCCTAGACCGACAGGATTATGTCCGGGCACAAATACTCTCAAAAAAGATTAGTCCAAGAGTGTT TGCTGTTGATGCATCTAAGGAAAAGAAAAAGCCTAAAGATGGCGACAATCTTGTTGAAGAGGCTCCGGCAGATATACCAT CTCTGCTAGAGTTGAAGCGGATCTATTATGAACTAATGATTCGGTAACTAATTCCTGCTTCTCGTTTTAATTGTATTTCT TACTCTATCATAATGTGGCTTACCCTTGTTTATCTGTTACCTCCTTCAATTTATTTGGTATAATAAACTGAGTGTCTAAC AGATGCTCAAAATGATTCTAGTCTTGGGGCTTTCCTGTTTCAGTAACATTGAGGATATGTTTTGTTGCTAGCCTAATTAT GAAAACCAAACAATGTTTGCAACTGGGTTCACCAGTACCCACACTTGAGAGATGCACAAGAAGACATAATGCTAATGACT GTCTACCTGCAATACGTTCTAAAATGTGTTCATTGTCTATTAATCTCTCTTCTTTGCATTTGTTGAAGTTTTCTTCATCA ATCATTTTAGTAATATAAGTGCAATTTTCCAAGTATTTACTTTTAGTTCTTTAATTGGATTGGTGGTCCATAAGGAAAAC TAATTTGTTGAAGGGTTGAATTGGCCTTGTCACTGAGTTTAAAACGTGAATAGAAGAGAGTGGATATGTACTAATCTGCT ATGCATTGATGGATAGGTAGATTTGATTATAACAAATATAAGTACTGATTTGCTTATATTTCTATGTGGTATATATTATG ATACCCCTCTTTATAACACTTCCATATCATTGTGAAGAGTCTAGAGGCAAGCATGTGATTTGCAATTAGATGAAATGTGA AATGTTCAAATCCTACCACTGTTGAATTGAAAAGCTTGGGCCTAGGCTTGAAGGATTTTCCCTAGGAACACTTTAGTCTC GGTATTCATGCCTCATCTTTCACCAAACCAGCGAGGCGGACCAGTCAAGTTTCCTGCAAGCTGGTCTGAAAAAGATTTGA CATGATATCAAATGAATATATGGATAAGGATGTGTATTATAGTTGGAGTATTAATGCATTGTCAGTGTAAAACAGTTGTC TGACATCCAATCATGCTATGCCATGTAGGACCACATTATAGGAGCAGTTATCTTTCTATTTATATAAATTAAAATAACAA ATTATTTACTGTTTTGGGACTTTAAATCCTTAAAGTTGTTAATTTATTTAAAATGTGATATCTAACTGTCAATTATTAAC TGGTAACCTCTTTTTGGTTCAGGTCAAATACATCCTATTCTCTTACATACATTTTACATCTTAATCACCTATTTTCTTTC CAATTAAACTGATATTATGTTTTGTGTGTGTTCCCTTGCTTTATATTCTTTAACTAATTGACATCCCATTTCTTTACAAT CATGAAATTAATCATTATGTTCTGCACAGTTTATAGTTCAAACATTTTGACATGATGCGAACTTTGATTGCCTCTTGGAA TCGTATGAAATATGAATGCTAAAATCACATGAACTAGCTTGCAGTTTTTAGTTATCCTTCCTGAATTGTAGATTCTTGTG TTTTTTCAACTGCAAAGTCAAGACCTTTTTTTTTCTTTGCTAGTTCTGTAACTCCCATCTAGGTTCACACTATTGCATAC CATGTACAGTGCTTATTCATCAATTGTCATTCATGCTGCCTTTGTAGCTGGGTCCTACTTTCCTTGGTCATTTCAATTGT ATGTATTTGATATTTTTCTGTGTGTTTATGGGGATTGGTTTGTGATATGTGACTATAATAAAATGTAGTAAAACTTCATA ATGGAGTCAAATATATTATGCACTGCTTTTCAAATTTGGTGCTATGCTTATTTACCACTTTCACAAATGGGGATTGATGT AGTCGAGTGCTTGTTTATTTTTACCTTCATGCTATATGTTTTTCAAATACCTAATTGCTGCTAATCTTAAAATATTCATT GTCTAATGCTAATTTTTGTTTTTTTTTGGAAGGTATTATTCCCATAACAATGATTATCTTGAAATTTGCCGTTGCTATAA GTCAATATATGAGATTCCATCTGTCAGAGAAAACCCTGCCGAGTGGATCCCAGTATGCTTTCTCTGTCTTTATTTGCACT TTCTGTTACTGCTAGGTTCTATTGTTCTATGATATAGTGTTTTTCTAAAAATTATCTTTACTTATAGATCCTGAGGAAAA TATGTTGGTACTTGGTTCTATCGCCACATGATCCAATGCAATCAAGCCTCCTTAATTCCACCTTGGAGGATAAGAATCTA TCTGAGATTCCAAACTTCAAGTATGTTAATCCTATTTATATCTGATGTTTTCTTGGTGATGTTCAAGTATTTTGTTTGTA ATTTCTTTTTTACTCGGTGTACCTGTTATATTCTGTGCTTAGGCTACTTTTGAAACAACTGGTCACAATGGAGGTCATCC AATGGACTACTCTTTGGGATACATATAAGAGTGAGTTTGAGAACGAGAAGGTCTCTGGGAAATCTTTGGATGAAAAAGCA GCCGAAGATTTAAAGCAAAGAATAATTGAACATGTAATTGACTGATGTCTTTATATTTCTTTGTTCTCCTGACATCAATT TGGTTGTATTGTGGGATATGCTTTTATGTTGCACACTTCTTTATGTGAGTATTTATAAGCATTATTTTTGTTTCTTTTCA GAATATTCTTGTCGTATCAAAATACTACGCCAGGATTACAGTGAAGAGACTTGCCCAGCTTTTGTGTCTTAGTGTACAGG TTTGTAAAGCTAGTTGTGATATATGCTTTTTTGAAGTGCTTGTGTGGTAACTTTTAAATGGCTCATGGGCATATCCCCTA GTATCTGTCACTGGAGACTAGTGTTTCAAATAAAAAATCTAGTTGGGGAGTTGTAGTTGACAGCGTATGTCTATGCTGTT GTGCTGCAGCAGTTCACTTGCCTCCTCCCATGGTTTATTTTGTGGGTTATCATTGTGGATGTTGTAACTAAATTTATTTT ACTTTGCTTCTTAAAATCATCTTAGTGATAATCCCAACTAATTCTCCATATCTCCTTACAAAATTCAGGAAGCTGAGAAG CATCTATCAGATATGGTTGTGTCGAAGGCACTGATAGCAAAGATTGATAGGCCAAAGGGAATAGTGTGTTTCCAAACAGC GAAGGATAGCAATGATATTCTTAACTCATGGGCAGCAAACTTGGAGAAATTGCTTGATCTTGTGGAGAAAAGTTGTCATC AAATACACAAGGAAACCATGGTCCATAAAGCTGTCTTAAAGGTTTAA
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0405800.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGAATTTAGATTCGGCGATAGAGCAATTGCTGAATGTGGAGAAGCAGATGAGGCTCGCCGGTGACGTTTCCGGCAC CAGGAAAGCCGCCACCGACATTCTGAAGCTCTGCTTTGATGCGCGAGCCTGGAAAACCCTAAACGACCAGATTGTCGTTT TGTCCAAACGTCGTGGTCAGCTTAAGCAGGCTGTAACAGCAATGGTCCAGCAGGCTATGCAATATATTGATGAGACACCG GACGTTGAAACTCGTGTAGAACTCATCAAAACATTGAACAGTGTATCTGCCGGGAAGATATATGTTGAGATTGAGAGGGC TAGGTTGATCAAGAAACTTGCAAAGATTAAGGAAGAACAAGGGCTTATAGCTGAAGCAGCTGATTTGATGCAAGAAATTG CGGTGGAAACTTTTGGTGCCATGGCAAAAACTGAAAAGATTGCATTCATCCTTGAACAAGTTCGTTTGTGCCTAGACCGA CAGGATTATGTCCGGGCACAAATACTCTCAAAAAAGATTAGTCCAAGAGTGTTTGCTGTTGATGCATCTAAGGAAAAGAA AAAGCCTAAAGATGGCGACAATCTTGTTGAAGAGGCTCCGGCAGATATACCATCTCTGCTAGAGTTGAAGCGGATCTATT ATGAACTAATGATTCGGTATTATTCCCATAACAATGATTATCTTGAAATTTGCCGTTGCTATAAGTCAATATATGAGATT CCATCTGTCAGAGAAAACCCTGCCGAGTGGATCCCAATCCTGAGGAAAATATGTTGGTACTTGGTTCTATCGCCACATGA TCCAATGCAATCAAGCCTCCTTAATTCCACCTTGGAGGATAAGAATCTATCTGAGATTCCAAACTTCAAGCTACTTTTGA AACAACTGGTCACAATGGAGGTCATCCAATGGACTACTCTTTGGGATACATATAAGAGTGAGTTTGAGAACGAGAAGGTC TCTGGGAAATCTTTGGATGAAAAAGCAGCCGAAGATTTAAAGCAAAGAATAATTGAACATAATATTCTTGTCGTATCAAA ATACTACGCCAGGATTACAGTGAAGAGACTTGCCCAGCTTTTGTGTCTTAGTGTACAGGAAGCTGAGAAGCATCTATCAG ATATGGTTGTGTCGAAGGCACTGATAGCAAAGATTGATAGGCCAAAGGGAATAGTGTGTTTCCAAACAGCGAAGGATAGC AATGATATTCTTAACTCATGGGCAGCAAACTTGGAGAAATTGCTTGATCTTGTGGAGAAAAGTTGTCATCAAATACACAA GGAAACCATGGTCCATAAAGCTGTCTTAAAGGTTTAA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0405800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MANLDSAIEQLLNVEKQMRLAGDVSGTRKAATDILKLCFDARAWKTLNDQIVVLSKRRGQLKQAVTAMVQQAMQYIDETP DVETRVELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEIAVETFGAMAKTEKIAFILEQVRLCLDR QDYVRAQILSKKISPRVFAVDASKEKKKPKDGDNLVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKSIYEI PSVRENPAEWIPILRKICWYLVLSPHDPMQSSLLNSTLEDKNLSEIPNFKLLLKQLVTMEVIQWTTLWDTYKSEFENEKV SGKSLDEKAAEDLKQRIIEHNILVVSKYYARITVKRLAQLLCLSVQEAEKHLSDMVVSKALIAKIDRPKGIVCFQTAKDS NDILNSWAANLEKLLDLVEKSCHQIHKETMVHKAVLKV
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10855:SF3
2 438 437 2.3E-245 –
PANTHER
PTHR10855
2 438 437 2.3E-245
IPR040134
ProSiteProfiles
PS50250
229 399 171 21.056
IPR000717
Pfam
PF01399
287 395 109 3.3E-20
IPR000717
Gene3D
G3DSA:1.10.10.10
323 403 81 3.8E-21
IPR036388
SMART
SM00753
328 414 87 7.3E-16 –
SMART
SM00088
328 414 87 7.3E-16
IPR000717
SUPERFAMILY
SSF46785
328 404 77 2.72E-19
IPR036390
Pfam
PF18098
401 433 33 1.1E-14
IPR040896

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0405800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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