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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0411100 |
| Transcript ID | LotjaGi4g1v0411100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|K7LIU0|K7LIU0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0411100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:78685652..78690883) extracted from Lotus japonicus Gifu genome v1.2.
TGAGAATCTTTTTTCAATCGGTTTTATAGCTCACTCAATGTAAAACCCTAGATTTGTGAATTTTCCCCAATTCAATTCTA TCGTGAGAGTGCTTCGAAGCTCTCTTCTCTTGTTCTTCTCCGTCATCTTGAGCTCTATCTGCTGCTGCTGGATGATGAAC GAGCAGGGACCAAGGAGCACGGAGGAGGAGAACCCTTCGCTCTCTCCCATCGTTCTCCCTGACGAGTTGATTGTAGCGAT TCTGGTGAGACTACCGGTGAGTTCTCTTCTCCGTTTCAAATGCGTCTCCAAATTGTGGCTCTCTCTAATTTCAGATACCC AATTTGCGAAATCCCATTTTGACCTAGCTGCTTCACCCACCCACCGTCTCCTCCTCAATTGCACTCATCAACTCCAATTC CAATCCTTAGACATTGATTCATCACCACCCAACAATGAATCTGCACTGCTCCAATACCTCCGTCAAGAGTTTCATGGTTA TGGTATAGAATACCATATAGATTTTCACCCCAAACTTCACGTCCTGGGTTCTTGCAGAGGGTTTCTACTCTTACTTTCAC CCAATCAAAATGATTTCATTGTGTCTAATCCATCAACGGGTGTGCAAACACTAATTCCATCATCTACTAGTTTTAGATAT TCTAGGCATTCTCAGTATGGTATTGGGTATGATGAATCAACTGATGACTACTTGTTAGTTTCTATAAATTCGTTTACAAT TGACCTGTTTTCTTTGAAAACCAATTTACCCTGCTCGCTGCCACTGGATCATGAATATCAGTTGTATGATTATTATTTTG CTAGTCCAATCGATTTGTTCTTACATGGGTCTCTTCATTGGTTGGTTACGTCGAGTCTTACGAAGCTTAGTGTAGTTCTT GCTTTTGATCTGGTAGGGAAGAGTTTATCAGAGATTGCTCTGTCGCCTGATTTAGCTCTGAAGAGAAAGCCATATCATTT CATAGAGATGACAGGATGTCTTGGTCTGTGTCCTGGTCTATGCTACTCTGGTAATCTTGGCATCATTGAAATATGGATAA TGAAAGAGTATAAACTGCAATCATCTTGGACTAAGATTGTTTTCTCTACTCATGACATCCTTAGCACACCCCGCTTTTTT CCAATATGTTTCACTAAATGTGGTCACGTTTTTGGATCAGATGAGGCTGGAAGATTCTTCAGAGTCAACGATAAAGGAAA GCTGCTTGCAGTTTGGCCGTTGGACTGGAAGAGCAATTATCGTCTATTACATAGTCGTATGTATACACCAAGTTTACTGT CACTCCCTAGTTAATTTGTAACAGACATCAAGTATCAATTCACTGATTCTCCTGAGGCTCTGTTGGTAATAGCCACCCCA ATGAATTTCCTCATTCAGCATATCCAGCAGGCGATGATAATCTGGACCTATTGTAATGTTTGACCTAATGTCTGCTCTTT TTGTCTTAGATAATGACATTTTAGATGTTAAATATTAAAACTTTTCAATTGTATGTAAGGTGTTTGATGTGCAGTTGAAG GAGAAATCAGTGATGGTTGTTAGCATGTACCTCTATATTCAATTTTACTTTTAGACAATGCTAATTGGTCCCGAGAAAAA ACAAGTTTGAGTTGCACTGGGTTGACTTGACCTTGACGCCGCCACTAATCTTCACTACTTTCCCACGAATCTTTTCTTTA ACCATTATTACTTTACTTGTGATTTTTTTTTTTCAATGAATAAAATTTAGGGTTAGAGGCTCGTGTTGAAAGTGTTGCGC CCAAAGAGCTCTAACAAGACTTACATTTACCTCACCCGAACTCGAATCTGCAATGCTCCAACCCTAGTGATTACTGATTA CTTGTGATTTCTTACATCACCGATTCCCTTCCAACTCTTAAAAAATAGTTCTTTTTTCCACAACAAACAAATGACATTCA TTTGCAATATCTCAGACGACCCAAGTCACTTCTGGTAGGTACGTCTCTTTGTTACTCACTCACAATCTCTGTGGAATTTT CAATTAACACTTGAAAGTTTCAATTTTTACCATCAAATTTCAGTTAGATTCAATTGGGGTTCGTTATGTCGTCGTTACCT GATTCCTGCGATTCAAGCTTGCTTCTTTTTCTGCCAGATGATGTATTTGCCATGGTGTCACGGTTCCTCAAGCCCAGAGA CATTTGCAATCTCAGTCTCTGCTGCAAGAGTCTCTGCGATCTTTCAGCTTCTGAAAAAGTGTGGCTCACTCAATGTGACA TCTTGAACATGCAAAGACATTGTTGAGTGGAGAGAGGGTGTGTCATCTTACAAGGCACTTTGCCGTTTTCTTCTGAGTGT TCAACCATTGCTTGGAACATGGGTGTATCAGAATCCTGAACTTGGTAACCTTGTCTATGTCATGCCAGGTTATGTGTCTG TTTTTTGGATGCAGGGTGGTTCCTCAGGAGATTGGTTCATTGGGGATTCATGATGGTCCTATCCTCTGGTCTGCTGTGTT TGAAGTTATTGGTGATTTTGATGGTTCAGCTGTTTTTGTCCTCCATGGAAGAGAAGAGGGTGTACATTATGTTTGTCTAA GGTCAGTGAAGTACATAGATAAATCTTGCAATGTTTTGTTGCTTGAGGTTGAGCCCTTGAAGGGTAGTAGCTTAGTATGC CAATCGGGTCTGGAGTTCTTAAAGAAGGTTTTTAGGTCATACATTGAGCTTTCTAGGCCACAAGGGGCGGTTGGAAATGA TGATGGAATACAGGTTCCCTTCAGTAAGTTGACTTTTACAGATAGAGGAATGTTGCTTGATATTACAACTATCCAAGTTC GACAAGAGGTTCCTAACATGGCAATGGGACCATTGTTTACTAGGTCAAGGGATGATTATGATAATTTTCAGAAGGATTTG GTGCTCTCGAGGGATAGAAGAGTGGCCCTAATTCAAATGTACAGGCTCGGGGGTATTCAGATTGACAATAAATGTACAGG AGAGGGTATTGCAAATGGTTATGGGTTCAACTACCCTGGATCACAACCCGGTTCCCTCTTTGTATTTCAAAATGGTATCC TTGCCTTCGTTTGGGTAGATTCAAGTGTTGTTTTGACCTTGCAAAGACTTGACTTGCAAGAACTTTTGAAGAAAGGAGAA AGGATACCCTCTCTGCCCCCCATCAACAATTTTTCATATTTGACCAAGTCTTACTCAAATGTGTTTACAGTCTCTCCTAG CACTTAGTTTTCATCGAGGTTTGCCTTAACCCTGAAGTACCAACTTGTTTTATATTTCAAAAATTTCAGATCAATCTATG CATATCCTCCTTGCTTCATTATATTTTTTGTGTTACAAAGATATTATTTGTGTTAGATATAGGTTAATAGATATCATGCC TGTTTCTTATTATTACTCCCAACCATTTTTCTTGAAGTTACATTTATGCTGATGTATAGACTTTTGACAAGTTAATAACC AATTCCAATTAGGTGGGTTTTTGGACTTTTTGGCATAATTTTGTAGATCTAGAGGACTAACAGAAAGTTGCTGCATTGTG TCTCTCTAGTGAGTTTCACTCTCCTAGTTGGTGACTTAATAAAACTAGTTGCATAGACCAATTTCATTTGAATGATTATT TGGATCTTCCAAGAAAAACAGTTTATTCATGAATCTAAGAAAACCAGTTAGAAAGGCTGTCTCCACTCAGTACAAGAAAT CTAATCTTTCTTTTTCCGTAGTTAGTGTTCAGTAAAAAAGTGAAAATTGTTAATCTCATATAATCTTCTAGAAGGAAATT ATCCTGTACAGAAAAAATTGCTCACTTTCTTTTGCTCTTCACCTCACTTCTCTATAGGCATATAGAAAATGTCCTGCCTG TGAAAAATGGCCACATTTTAAGTGGATCACGTTATATGCTATTGTAGACATGATCAATGCTAGCAACACACTCTTTTATG ATTAATGTATTTTTTTAATAAGCCAAAACACTTGCCCTGTAATTTGATCGCTTTTTAAGGTGTGTTGAAGTTTATAAAAA TGGACCAACCATAGAAAGTTTGTTAAAGAGTGTGTTGCTGGCATTTCTGAATTACACTGACATTTGCCCGTTATTACTTA ATATATGTCAACCACCTTTGTGAACTGGGGAAATTAACATTTAGTAGAACAGAGATCAGCTGAGTCCTGAATACAATTAG GGGTGGAAAATGCTTCTATGCGGTACAAGTACAACAATCATTGGAATCAGATTTTGTAGTTCTCCAATATATACAATGCT TTATTATATCTAGCAAGCCCTGCCACCAGTGGATTATTTTTTCAATTACTGTTATAGTGTTATGAAATATATTGTAACAT CATTCAGATATAGCCACTTCATATGCTACTTTTCTTTATAACCTTTCCCGCATTGTCTGTGAAATAAATGATGGTAAAGG ATTTAAATGTAATTGAAATCTATCGAAGATTGATATTAATTGCTCGTTTTTTTTTAAATTCTCTTCTAAAAGTTTGAATG TTGACAGGTAAAGACAACACCAGTATATTAGTGGGTTTGGAGCTTCATGGTTTTGACATAATAGCAGTGTAAGTTGTTAT TCAGTTGTAAAATTCAGGTAGCCATAAAAGGTTGGATTAGTTTGATCAATTTTCAGTAATTTTTATAATAATGGCTTATT TTGATAGTAAATGAGTTTAATTTAGTAACACGTTTGATTAATTTCCTGCTTTTGCAGGCTTCCCAGCGCCAAGAAGTTGG CATCCCGACGCTTAGGTGTTGGGAAGGCGCAAGCTTAAGCGTCCCCGCGCTCAGGAGATATAGATCATTAGATCATTTCA ATTTTTTGGAAAAAATCTTTTAGGCACAGAAGGAGGGCAGATGGAGTTTATCAGAGGTTTTGGGAGCAAAGGAGGCTAGA GAGCTGGAGCTGAATCTCAGAAGTGGAAGCACCAACTCCTGATGTCTTCTACTTTTTTATACTTTGGTTTTACTTGTTTC TCATACTTTGTGACTGGCTAAGTTTTTCATTGTTAGAGGGTGATTTTACTACTTGAAATACTTGTTCCAAACACTTTAAT AATTTAATATGCTGCATTTTAGCTTTGTTATTGTGCCCTCTCTAGTTTTAATGAATCTTTGTCTATTGGATGATGATTTA GCATGTTTGTTATTGGAAATTAGAGTTTTCTTGTGTGAGTTGAGAACAGTGTATATTATGTTTTTGTCAGTGTATATTAT GTTTTTGTCAGGGCCGTGTATAGACATCTGGG
CDS sequence (LotjaGi4g1v0411100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGAACGAGCAGGGACCAAGGAGCACGGAGGAGGAGAACCCTTCGCTCTCTCCCATCGTTCTCCCTGACGAGTTGAT TGTAGCGATTCTGGTGAGACTACCGGTGAGTTCTCTTCTCCGTTTCAAATGCGTCTCCAAATTGTGGCTCTCTCTAATTT CAGATACCCAATTTGCGAAATCCCATTTTGACCTAGCTGCTTCACCCACCCACCGTCTCCTCCTCAATTGCACTCATCAA CTCCAATTCCAATCCTTAGACATTGATTCATCACCACCCAACAATGAATCTGCACTGCTCCAATACCTCCGTCAAGAGTT TCATGGTTATGGTATAGAATACCATATAGATTTTCACCCCAAACTTCACGTCCTGGGTTCTTGCAGAGGGTTTCTACTCT TACTTTCACCCAATCAAAATGATTTCATTGTGTCTAATCCATCAACGGGTGTGCAAACACTAATTCCATCATCTACTAGT TTTAGATATTCTAGGCATTCTCAGTATGGTATTGGGTATGATGAATCAACTGATGACTACTTGTTAGTTTCTATAAATTC GTTTACAATTGACCTGTTTTCTTTGAAAACCAATTTACCCTGCTCGCTGCCACTGGATCATGAATATCAGTTGTATGATT ATTATTTTGCTAGTCCAATCGATTTGTTCTTACATGGGTCTCTTCATTGGTTGGTTACGTCGAGTCTTACGAAGCTTAGT GTAGTTCTTGCTTTTGATCTGGTAGGGAAGAGTTTATCAGAGATTGCTCTGTCGCCTGATTTAGCTCTGAAGAGAAAGCC ATATCATTTCATAGAGATGACAGGATGTCTTGGTCTGTGTCCTGGTCTATGCTACTCTGGTAATCTTGGCATCATTGAAA TATGGATAATGAAAGAGTATAAACTGCAATCATCTTGGACTAAGATTGTTTTCTCTACTCATGACATCCTTAGCACACCC CGCTTTTTTCCAATATGTTTCACTAAATGTGGTCACGTTTTTGGATCAGATGAGGCTGGAAGATTCTTCAGAGTCAACGA TAAAGGAAAGCTGCTTGCAGTTTGGCCGTTGGACTGGAAGAGCAATTATCGTCTATTACATAGTCGTATGTATACACCAA GTTTACTGTCACTCCCTAGTTAA
Protein sequence (LotjaGi4g1v0411100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMNEQGPRSTEEENPSLSPIVLPDELIVAILVRLPVSSLLRFKCVSKLWLSLISDTQFAKSHFDLAASPTHRLLLNCTHQ LQFQSLDIDSSPPNNESALLQYLRQEFHGYGIEYHIDFHPKLHVLGSCRGFLLLLSPNQNDFIVSNPSTGVQTLIPSSTS FRYSRHSQYGIGYDESTDDYLLVSINSFTIDLFSLKTNLPCSLPLDHEYQLYDYYFASPIDLFLHGSLHWLVTSSLTKLS VVLAFDLVGKSLSEIALSPDLALKRKPYHFIEMTGCLGLCPGLCYSGNLGIIEIWIMKEYKLQSSWTKIVFSTHDILSTP RFFPICFTKCGHVFGSDEAGRFFRVNDKGKLLAVWPLDWKSNYRLLHSRMYTPSLLSLPS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 13 | 105 | 93 | 1.2E-7 | – | |
| ProSiteProfiles | 16 | 62 | 47 | 9.921 | ||
| PANTHER | 20 | 359 | 340 | 3.2E-65 | – | |
| PANTHER | 20 | 359 | 340 | 3.2E-65 | – | |
| SUPERFAMILY | 21 | 74 | 54 | 4.45E-13 | ||
| SMART | 22 | 62 | 41 | 4.8E-5 | ||
| Pfam | 22 | 55 | 34 | 6.5E-7 | ||
| TIGRFAM | 127 | 314 | 188 | 2.4E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0411100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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