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LotjaGi4g1v0425100.1

Overview

Field Value
Gene ID LotjaGi4g1v0425100
Transcript ID LotjaGi4g1v0425100.1
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Glutathione S-transferase family protein; TAIR: AT5G41240.1 glutathione S-transferase THETA 2; Swiss-Prot: sp|Q8L727|GSTT2_ARATH Glutathione S-transferase T2; TrEMBL-Plants: tr|K7L4D5|K7L4D5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0425100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:80000386..80002352) extracted from Lotus japonicus Gifu genome v1.2.

ATGATGGAGAAGGTGAAGGTGTATGCAGATCGTATGTCCCAGCCAGCTCGAGCAGTTCTCATATTCTGCAGGTGATTAAC TAATTCTTCAAATTTGACTTCACACACAAACAAACCCATGATTCATTATATGATATTGAGTCAAATTTTTATCATCTGCT GTTTTATTGAATCCGGGTTTTGACATGAAAAGGGTTAACGGAATTGACTTCGAGGAGATTAAGGTTGACCTTTCCAAACG TCAGCATCTGTCTCCTGAGTTCAGAGGTAGAATAAAAAAACAAGCATCTGCATGTTATAATTTGTATGCACTTGCCATGT GTTTAATTCTGCTTTTGACATTGTTTCTTGATGATTTCAGAAGTAAATCCTCTGCAGAAAGTTCCAGCTATTGCTCATGG AACCTTAAATCTCTCCGAGAGGTAACCATTGACTTAAGGGCCGTGTCCTTTAACCTTCAATTTCAGTTCTATATAGTACA ATTTGTGGAATTCACTTTATAAATTTGTGGTTGATTAAATGAAATGGATCTTTCTTTCCAATGCCTTTGTAAGTGATATA CAGTGATTCCATCATGTATGTGTTTTTATTACATCTTCTTTGTCGCCTATACTTTTCTAATCTCTTCAAATTCTGCTATT TGTAAATTTTGAAATTCCATATCAAAAATATGTTTACTTGTTGGTTTCATTGTATGTTCTTCATTAATCTTGTTTTGATT TGACAGCCATGCGATCCTCGTCTATCTTGCTTCTGCTTTTCCTGGAATTGCTGATCATTGGTTAGTAGAACCACTTCTTT TGCTTCTGGAATTCTGAACTGGTAAAGGGTTTTCAAGATATCCTCATAAATATCAGAACAGGACTTTTTCATTTTGTACT AGTTTAACATGAGTAAAGCAAAGGGCTTAAGCTAACCATGACCTTGGTTCCTTGTGCATTTCCAGTACCCTTTTGACTCG CTTTCAGATTTTTATTTGAAATTAAATATTAGGATGAATTAGAATAGAGTAAATAACTTAAGAAATACAATGATTCTAAA TCCAATTTATGCTGCAGAGATATACAATTTTCACAATCTAAATTAAACCCTAGTTGTCACTTGTCATGCCTTGCAGATTG AAGTGTTGTCATGTACGACTGAAATTTTCTTGTGCCGAGTTGTTCTATATAACACCTTTCCTTCTTGATGTATCAGGTAT CCAACCGATGTTTCCAGGAGAGCCAAAATTAACTCGGTATTGGATTGGCAGCACTCTAATTTACGACACGGAGCAGGTGC TTTACACATCTAAATCCGGTCATCCTTAAAACTCCTTGAAGCTATATTGTAATTTTCTGTGAGCACTTGAGCTTCTACAT TAGAAACTTGTGTGCTAGTTAGGCATTGTAACGTACAACCAAAAAGAAAATTCAATCATATTCAAATGTTTATTACCTTT TGCAGTGAACTATGTGGTAAATACTGTACTAGGACCTGCACTTGGCCGTCCACTGAATCCAAAAGCAGCTGCTGAAGCAG AGAAAGTTTTATCATCTTCTTTATCGAAACTAGAGCATATTTGGCTAAATGGAGATGGACCTTTTCTGCTTGGTGGCTTT CAACCCTCTATAGCAGATCTCAGCCTGGTTTGTGAACTCATGCAACTTGAGGTAACTCAATATGACTTAATAATTGTGTA ACTATTGTGATTTATGATGGATTGCTTTTTACATAAATTTATGAAGTTTCTAATTAAACTGCCAATAAACTTAGGTTTTG GATGAGAAGGATCGCAATCGTATATTATCCCCATACAAGAAAGTTCTGCGGTGGATTGAGGATACAAGAACTGCAACAAA TCCACACTTCGAAGAAATGCATAATGTCCTTTACAGAGCTAAAAAGAAATTCCAACAGGAGCGTTCAAGGGTAGCTAAAA CTGGGACTGAGCCTAGCAACAAGTTAGGGGGGCATTCAAAAATGTGA
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0425100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATGGAGAAGGTGAAGGTGTATGCAGATCGTATGTCCCAGCCAGCTCGAGCAGTTCTCATATTCTGCAGGGTTAACGG AATTGACTTCGAGGAGATTAAGGTTGACCTTTCCAAACGTCAGCATCTGTCTCCTGAGTTCAGAGAAGTAAATCCTCTGC AGAAAGTTCCAGCTATTGCTCATGGAACCTTAAATCTCTCCGAGAGGTATCCAACCGATGTTTCCAGGAGAGCCAAAATT AACTCGGTATTGGATTGGCAGCACTCTAATTTACGACACGGAGCAGTGAACTATGTGGTAAATACTGTACTAGGACCTGC ACTTGGCCGTCCACTGAATCCAAAAGCAGCTGCTGAAGCAGAGAAAGTTTTATCATCTTCTTTATCGAAACTAGAGCATA TTTGGCTAAATGGAGATGGACCTTTTCTGCTTGGTGGCTTTCAACCCTCTATAGCAGATCTCAGCCTGGTTTGTGAACTC ATGCAACTTGAGGTTTTGGATGAGAAGGATCGCAATCGTATATTATCCCCATACAAGAAAGTTCTGCGGTGGATTGAGGA TACAAGAACTGCAACAAATCCACACTTCGAAGAAATGCATAATGTCCTTTACAGAGCTAAAAAGAAATTCCAACAGGAGC GTTCAAGGGTAGCTAAAACTGGGACTGAGCCTAGCAACAAGTTAGGGGGGCATTCAAAAATGTGA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0425100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MMEKVKVYADRMSQPARAVLIFCRVNGIDFEEIKVDLSKRQHLSPEFREVNPLQKVPAIAHGTLNLSERYPTDVSRRAKI NSVLDWQHSNLRHGAVNYVVNTVLGPALGRPLNPKAAAEAEKVLSSSLSKLEHIWLNGDGPFLLGGFQPSIADLSLVCEL MQLEVLDEKDRNRILSPYKKVLRWIEDTRTATNPHFEEMHNVLYRAKKKFQQERSRVAKTGTEPSNKLGGHSKM
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.40.30.10
1 69 69 1.5E-16
IPR036249
PANTHER
PTHR44750
2 234 233 1.1E-140
IPR043377
PANTHER
PTHR44750:SF3
2 234 233 1.1E-140 –
SUPERFAMILY
SSF52833
2 68 67 4.49E-14
IPR036249
ProSiteProfiles
PS50404
3 102 100 12.349
IPR004045
Pfam
PF02798
4 68 65 2.5E-7
IPR004045
SUPERFAMILY
SSF47616
70 199 130 8.07E-19
IPR036282
Gene3D
G3DSA:1.20.1050.10
70 223 154 4.1E-42 –
ProSiteProfiles
PS50405
73 210 138 13.275
IPR010987
CDD
cd03183
76 205 130 1.48417E-42
IPR040077
Pfam
PF13410
116 186 71 7.3E-6 –
MobiDBLite
mobidb-lite
212 234 23 - –
MobiDBLite
mobidb-lite
217 234 18 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0425100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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