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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0436200 |
| Transcript ID | LotjaGi4g1v0436200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ubiquitin 4; TAIR: AT2G46500.1 phosphoinositide 4-kinase gamma 4; Swiss-Prot: sp|Q9ZPY9|P4KG4_ARATH Phosphatidylinositol 4-kinase gamma 4; TrEMBL-Plants: tr|I1K689|I1K689_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0436200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:80922545..80925549) extracted from Lotus japonicus Gifu genome v1.2.
GCTGATTATGCTTTGAGTTCGGTTTGCAAAGAGACGGTGTGTTGGGAAGGTCAATCAGGGCATTGCTCTGATGAGCCAAT CCTGATTTACCTTACTGTGGGGGGTGCTGTGACACCAATGCGTGTGTTGGAGTCTGATTCCATTGCCTCTGTGAAACTGA GGATTCAGCAATGCAAAGGCTTTGTGGTGAAGAAGCAGAAGCTGGTTTTTAGTGGCAGAGAGCTTGCTCGCAATGGAACA CTCATTAAAGACTATGGTGTCACTGATGGGAATGTTCTTCATCTGGTTCTCCGGCTCTCGGATCTTTTGTCCATCGTTGT GAGGACCGTTTGCGGTAAGGAATTTGAGTTTCACATTGATCGGCATAGAAATGTGGGGTATCTTAAGCAGCGTATTCGAA AAAAAGGGGAAGGTTTTATTGATCTTGAGGATCAAGAGCTTTTCTGCAATGATGAGAAGCTTGATGACCAGAGTCTCTTC CATGACATTTGCAAGGGTGATGATGGTGTGATTCATTTGATTATTAGAAAATCAGCTAAGGTTAGGACCACACCCATTCA CAGGGATTTGAAGCTTTCGGTTGAGGCACCTTGCATACCAGGTGAGAGTGAGAGCACTGATCAAAGAGTGAAACTGGGAG AGAATAGGACCAAACAAATTAAAATAGTTTCAAAGATAGTGATTCCACCTGGTGTAGGTTTCTGGTTGGAACCAATTTTA GTGAATCCCAAGATCAATTTTTTTCCTTTCCTTAGGGACATGATCAACTCCACATATGAGGGTTTGAAGAGAGGAAATCG TCCTATTAGGTCCTCGGAAGGCACAGGAGGGACTTACTTCATGCAGGATTCAACAGGTCAGGAGCATGTTTCAGTTTTTA AGCCCATGGATGAGGAACCAATGGCTGTGAACAACCCGCGAGGCTTGCCAAGTTCAGCTGATGGCGAAGGTTTGAAAAGA GGCACAAGGGTGGGAGAAGGAGCTTTGAGGGAAGTTGCAGCTTATGTGTTAGATCATCCAAGGAATGGGCCACGTTTGGT CTCGGGTGAAGAAATGGGGTTTTCTGGTGTTCCCCCTACTGTTATGGTGCAGTGCTTGCACCAAGAGTTTTACCACCCAA ATGGTTCATCAAAACATGTCAAGATAGGGTCATTGCAGAAGTTCATGAATAATGATGGCAACTGCGAGGACATTGGACCC GGGGCCTTTCCAGTGGAGGAGGTGCATAAGATTACTGTGCTTGATATAAGAATGGCTAATGCTGACAGACATTCTGGAAA TATATTGATTAGAAAGGAAGCAGATGGCAATATTAAGCTCATTCCTATTGATCATGGCTATTGTCTCCCTACTAAAGTGA GCATTTCCATTCTTCTCTCCTTACATCCTTTTTTTCTATGCATTATCTTTTTTTCATTGTTTGGTATCTTTAGAGTAGAG TGAATGTGAGAATGTGTTGTTCTAGTCGGTTGGTTTAGGTTATGTAAGTTATTTTCAATTATATTACGGTCTCTGTAGGA AGAGCTTATTTGAGCTTAAGCGCTTATGGCCCCGTTTGGAAAAGCAGCTTAATTAAGCACTTATGGTCATAAGCGCGAGA ATGTGTTGTTCTAGTCGGTTGGTTTAGGTTATGTAAGTTATTTTCAATTATATTACGGTCTCTGTAGGAAGAGCTTATTT GAGCTTAAGCGCTTATGGCCCCGTTTGGAAAAGCAGCTTAATTAAGCACTTATGGTCATAAGCGCTTATGACATAAGCGC TTATTCATAAGCTATTTTTGAAAATTTATTGAAATAAATTAAAAATAAGCTGTATATAAGCATAAGCTGTTTTTCATAAG CTATCCTAAGTAGCTTATGAAAATAAGCTGAAAATAGCTTATGACGGGTCATAAGCTGTTTGCATAAGCTCTCCCAAACA CTGGCATAAGAGCTTATGCTGTCAGATAAGCTCAAATAAGCTCTTCCAAACTGGGCCTATATCAATGTTTGGATAAGCCT ATAAGTTGTTCTGAGCTTATTTTCTTAAATGAGTCAAATTAACTTATGAATAGGCGTTTATAGCTAACTATAGAGCTTGT TTCAATAAACTTAAATTAATTTATGAGATTAAGCGCTTATGATACCCAAACGCAACCTAAGTCATTTTTAAGCGTAATTA TTTGAGCATTAGGCCTTGTAGTGTGTTTGGGTAAGTTTATGATAATAGCTTATGGTCTACCTATAAGCTATTTTGAGCTT ATTTTCATAAATGACTCATATTAGCTAATTATAAGCGTTATCTACCTATAAGCTATAAAGCTATGTTGAGCTTATTTCAA TGAACTTCTAAATTAGTTTATGAATAAAAACTTATGTGATAAACACTTAAGATACCTGAACGCAACCTAAGTCATTTTAC AGAGAAATTATTTGCATTTCCTGATCTGATCAAATTTGCAAAATGGTAAAGATGGATGAAACTTAATTTTCTTATGCAGA CAATGTATGTGGATAATTGATGTATATTGGCAGATAGACTTCATAGGTACTAGGAATTTGGGTGTTGAATTGATACATAT CAGTTTATATGTCCTGCTCAAAATTAAAAGATTCATCTCATATCAGTATACGTTGTCTTCTCTGCAGTTTGAAGATTGCA CATTTGATTGGCTTTACTGGCCACAAGCATGTGAGCCTTACTCTCCTGAGACGGTTGATTACATCAATTCTCTGGATGCT GAAAAAGACATAGAACTCTTGAAATACTATGGATGGGATATTCCACTTCAGTGTGCACGAACACTCCGTGTTTCCACAAT GTTGCTGAAGAAAGGGGTGGCGAGAGGTCTCAGTCCTTATGCAATTGGAACCATCATGTGCCGCGAAAATTTGAACAAGG AATCTGAAATTGAGGAGATCATTAGTGAAGCTCAAGATTCCTTGCTTCCTGGCATGGAGGAATCAGCATTTCTTGAATCC ATCTCCCAAATCATGGATTCACACCTTGATAAGCTTGCAAAATAG
CDS sequence (LotjaGi4g1v0436200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCGTGTGTTGGAGTCTGATTCCATTGCCTCTGTGAAACTGAGGATTCAGCAATGCAAAGGCTTTGTGGTGAAGAAGCA GAAGCTGGTTTTTAGTGGCAGAGAGCTTGCTCGCAATGGAACACTCATTAAAGACTATGGTGTCACTGATGGGAATGTTC TTCATCTGGTTCTCCGGCTCTCGGATCTTTTGTCCATCGTTGTGAGGACCGTTTGCGGTAAGGAATTTGAGTTTCACATT GATCGGCATAGAAATGTGGGGTATCTTAAGCAGCGTATTCGAAAAAAAGGGGAAGGTTTTATTGATCTTGAGGATCAAGA GCTTTTCTGCAATGATGAGAAGCTTGATGACCAGAGTCTCTTCCATGACATTTGCAAGGGTGATGATGGTGTGATTCATT TGATTATTAGAAAATCAGCTAAGGTTAGGACCACACCCATTCACAGGGATTTGAAGCTTTCGGTTGAGGCACCTTAA
Protein sequence (LotjaGi4g1v0436200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRVLESDSIASVKLRIQQCKGFVVKKQKLVFSGRELARNGTLIKDYGVTDGNVLHLVLRLSDLLSIVVRTVCGKEFEFHI DRHRNVGYLKQRIRKKGEGFIDLEDQELFCNDEKLDDQSLFHDICKGDDGVIHLIIRKSAKVRTTPIHRDLKLSVEAP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 62 | 62 | 3.9E-14 | – | |
| ProSiteProfiles | 1 | 59 | 59 | 14.012 | ||
| CDD | 1 | 60 | 60 | 4.52973E-21 | – | |
| PANTHER | 1 | 157 | 157 | 5.2E-79 | – | |
| PANTHER | 1 | 157 | 157 | 5.2E-79 | – | |
| Pfam | 2 | 60 | 59 | 5.3E-15 | ||
| SUPERFAMILY | 2 | 61 | 60 | 8.75E-15 | ||
| SUPERFAMILY | 60 | 138 | 79 | 4.14E-13 | ||
| Gene3D | 63 | 142 | 80 | 1.3E-10 | – | |
| ProSiteProfiles | 64 | 141 | 78 | 10.789 | ||
| CDD | 66 | 135 | 70 | 1.99055E-8 | – | |
| Pfam | 66 | 138 | 73 | 4.7E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0436200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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