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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR029071
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 320 results. Now displaying 1 of 7 with 50 rows per page. This search has taken 5.866s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0013789.1
n.a. n.a. chr0 5219527 5221594 +
2 domain predictions
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Lj0g3v0068289.1
n.a. ubiquitin-like protein 5 [Wolffia australiana] gi|374434002|gb|AEZ52393.1| chr0 24442264 24442485 +
2 domain predictions
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Lj0g3v0084689.1
n.a. PREDICTED: FAS-associated factor 2-B-like [Glycine max] gi|356564976|ref|XP_003550721.1| chr0 33737994 33740326 -
2 domain predictions
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Lj0g3v0087339.1
n.a. PREDICTED: FAS-associated factor 2-B-like [Glycine max] gi|356576614|ref|XP_003556425.1| chr0 35487962 35489523 +
2 domain predictions
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Lj0g3v0098329.2
n.a. UBX domain-containing protein [Arabidopsis lyrata subsp]. lyrata] gi|297799700|ref|XP_002867734.1| chr0 41612926 41615812 -
2 domain predictions
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Lj0g3v0111459.1
n.a. PREDICTED: E3 ubiquitin-protein ligase UPL5-like [Glycine max] gi|356562613|ref|XP_003549564.1| chr0 48419514 48422238 +
2 domain predictions
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Lj0g3v0119929.1
n.a. PREDICTED: ubiquitin-NEDD8-like protein RUB2-like [Glycine max] gi|356525758|ref|XP_003531490.1| chr0 53212482 53215346 +
2 domain predictions
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Lj0g3v0175819.1
n.a. Polyubiquitin-A [Triticum urartu] gi|474093556|gb|EMS54972.1| chr0 84897532 84899697 +
2 domain predictions
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Lj0g3v0178099.1
n.a. polyubiquitin 10 [Arabidopsis thaliana] gi|240255756|ref|NP_849300.4| chr0 86267534 86269597 -
2 domain predictions
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Lj0g3v0187539.1
n.a. PREDICTED: ubiquitin-like protein ATG12-like [Cicer arietinum] gi|502156412|ref|XP_004510461.1| chr0 91464053 91466599 -
2 domain predictions
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Lj0g3v0194529.1
n.a. Unknown protein [Arabidopsis thaliana] gi|14596001|gb|AAK68728.1| chr0 94903795 94904414 -
2 domain predictions
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Lj0g3v0201989.1
n.a. PREDICTED: probable phosphatidylinositol 4-kinase type 2-beta At1g26270-like [Glycine max] gi|356495721|ref|XP_003516722.1| chr0 99944694 99948327 -
2 domain predictions
 –
Lj0g3v0253199.1
n.a. PREDICTED: UBX domain-containing protein 7-like [Cicer arietinum] gi|502154165|ref|XP_004509607.1| chr0 131476062 131483209 +
2 domain predictions
 –
Lj0g3v0253199.2
n.a. PREDICTED: UBX domain-containing protein 7-like [Cicer arietinum] gi|502154165|ref|XP_004509607.1| chr0 131479192 131483209 +
2 domain predictions
 –
Lj0g3v0266149.1
n.a. Ubiquitin-like domain-containing CTD phosphatase [Medicago truncatula] gi|357519321|ref|XP_003629949.1| chr0 137819490 137820187 -
2 domain predictions
 –
Lj0g3v0266149.2
n.a. Ubiquitin-like domain-containing CTD phosphatase [Medicago truncatula] gi|357519321|ref|XP_003629949.1| chr0 137819490 137820410 -
2 domain predictions
 –
Lj0g3v0279589.1
n.a. PREDICTED: probable splicing factor 3A subunit 1-like isoform 1 [Glycine max] gi|356575640|ref|XP_003555946.1| chr0 145125579 145128149 +
2 domain predictions
 –
Lj0g3v0305739.1
n.a. PREDICTED: tether containing UBX domain for GLUT4-like isoform X1 [Cicer arietinum] gi|502091544|ref|XP_004489577.1| chr0 159385441 159391897 -
2 domain predictions
 –
Lj0g3v0305739.2
n.a. PREDICTED: tether containing UBX domain for GLUT4-like isoform X2 [Cicer arietinum] gi|502091548|ref|XP_004489578.1| chr0 159385441 159391897 -
2 domain predictions
 –
Lj0g3v0307289.1
n.a. PREDICTED: probable phosphatidylinositol 4-kinase type 2-beta At1g26270-like [Glycine max] gi|356495721|ref|XP_003516722.1| chr0 160407531 160409807 -
2 domain predictions
 –
Lj0g3v0310259.1
n.a. PREDICTED: BAG family molecular chaperone regulator 1-like isoform X1 [Cicer arietinum] gi|502178049|ref|XP_004516168.1| chr0 162008281 162011205 +
2 domain predictions
 –
Lj0g3v0316729.1
n.a. Ubiquitin [Medicago truncatula] gi|358349317|ref|XP_003638685.1| chr0 165460767 165463414 +
2 domain predictions
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Lj0g3v0317029.1
n.a. Autophagy-related protein 8f [Medicago truncatula] gi|357476885|ref|XP_003608728.1| chr0 165595914 165599760 +
2 domain predictions
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Lj0g3v0318879.1
n.a. PREDICTED: ubiquitin-fold modifier 1-like [Glycine max] gi|356552829|ref|XP_003544765.1| chr0 166525064 166529506 -
2 domain predictions
 –
Lj0g3v0319629.1
n.a. PREDICTED: small ubiquitin-related modifier 2-like [Glycine max] gi|356567836|ref|XP_003552121.1| chr0 166855156 166858608 -
2 domain predictions
 –
Lj0g3v0328939.1
n.a. polyubiquitin, partial [Wolffia australiana] gi|374412404|gb|AEZ49160.1| chr0 171964218 171965972 -
2 domain predictions
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Lj0g3v0329879.1
n.a. PREDICTED: telomere repeat-binding protein 5-like [Glycine max] gi|356547261|ref|XP_003542034.1| chr0 172437085 172440220 -
2 domain predictions
 –
Lj0g3v0336129.1
n.a. PREDICTED: BAG family molecular chaperone regulator 4-like [Cicer arietinum] gi|502146919|ref|XP_004506660.1| chr0 176072396 176078856 -
2 domain predictions
 –
Lj0g3v0338459.1
n.a. Membrane-anchored ubiquitin-fold protein [Medicago truncatula] gi|357496673|ref|XP_003618625.1| chr0 177204013 177207071 +
2 domain predictions
 –
Lj0g3v0338459.2
n.a. Membrane-anchored ubiquitin-fold protein [Medicago truncatula] gi|357496673|ref|XP_003618625.1| chr0 177204151 177207071 +
2 domain predictions
 –
Lj0g3v0338909.1
n.a. PREDICTED: ubiquilin-1-like [Glycine max] gi|356501749|ref|XP_003519686.1| chr0 177477416 177484896 -
2 domain predictions
 –
Lj0g3v0345729.1
n.a. Nucleic acid binding,ATP-dependent helicases,ATP binding,helicases,ATP-dependent helicases isoform 1 [Theobroma cacao] gi|508774890|gb|EOY22146.1| chr0 181352044 181359837 -
2 domain predictions
 –
Lj0g3v0358289.1
n.a. PREDICTED: E3 ubiquitin-protein ligase UPL5-like [Glycine max] gi|356520102|ref|XP_003528704.1| chr0 188599547 188601878 -
2 domain predictions
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Lj1g3v0052520.1
n.a. PREDICTED: polyubiquitin 3-like [Cicer arietinum] gi|502134206|ref|XP_004502037.1| chr1 498773 499090 +
2 domain predictions
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Lj1g3v0052530.1
n.a. PREDICTED: polyubiquitin-like [Fragaria vesca subsp]. vesca] gi|470114108|ref|XP_004293259.1| chr1 511089 511580 +
2 domain predictions
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Lj1g3v0683910.1
n.a. Ubiquitin supergroup,Ribosomal protein L40e [Theobroma cacao] gi|508776404|gb|EOY23660.1| chr1 8934391 8935359 +
2 domain predictions
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Lj1g3v0984190.1
n.a. Phosphatidylinositol 4-kinase type 2-beta [Medicago truncatula] gi|357463917|ref|XP_003602240.1| chr1 12435629 12438829 -
2 domain predictions
 –
Lj1g3v1035300.1
n.a. Ubiquitin supergroup,Ribosomal protein L40e [Theobroma cacao] gi|508776404|gb|EOY23660.1| chr1 13002759 13005163 +
2 domain predictions
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Lj1g3v2372370.1
n.a. PREDICTED: BAG family molecular chaperone regulator 4-like isoform X1 [Cicer arietinum] gi|502104236|ref|XP_004492474.1| chr1 27856882 27860483 +
2 domain predictions
 –
Lj1g3v2996670.2
n.a. PREDICTED: membrane-anchored ubiquitin-fold protein 2-like [Glycine max] gi|356526475|ref|XP_003531843.1| chr1 34139589 34144231 -
2 domain predictions
 –
Lj1g3v3076170.1
n.a. n.a. chr1 35001922 35008328 +
2 domain predictions
 –
Lj1g3v3328650.1
n.a. RAD23-like [Solanum tuberosum] gi|77745475|gb|ABB02636.1| chr1 37256074 37261582 +
2 domain predictions
 –
Lj1g3v3444280.1
n.a. PREDICTED: telomere repeat-binding protein 4-like [Glycine max] gi|356566517|ref|XP_003551477.1| chr1 39966902 39972403 +
2 domain predictions
 –
Lj1g3v3729250.1
n.a. PREDICTED: BAG family molecular chaperone regulator 2-like [Cicer arietinum] gi|502091460|ref|XP_004489556.1| chr1 42935652 42936858 -
2 domain predictions
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Lj1g3v3754960.1
n.a. PREDICTED: tether containing UBX domain for GLUT4-like [Glycine max] gi|356571465|ref|XP_003553897.1| chr1 43134417 43139960 -
2 domain predictions
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Lj1g3v3891780.1
n.a. PREDICTED: membrane-anchored ubiquitin-fold protein 4 [Vitis vinifera] gi|225451517|ref|XP_002272710.1| chr1 44620282 44626563 -
2 domain predictions
 –
Lj1g3v4764200.1
n.a. PREDICTED: NPL4-like protein 1-like [Cicer arietinum] gi|502112372|ref|XP_004494310.1| chr1 57287489 57291737 -
2 domain predictions
 –
Lj1g3v4764210.1
n.a. PREDICTED: NPL4-like protein 1-like [Cicer arietinum] gi|502112372|ref|XP_004494310.1| chr1 57287775 57291737 -
2 domain predictions
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Lj1g3v4917510.1
n.a. PREDICTED: membrane-anchored ubiquitin-fold protein 3 [Vitis vinifera] gi|225436779|ref|XP_002268145.1| chr1 59625672 59629462 +
2 domain predictions
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Lj1g3v5034840.1
n.a. Ubiquitin [Medicago truncatula] gi|358349317|ref|XP_003638685.1| chr1 61553415 61556597 +
2 domain predictions
 –