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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR000626
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 247 results. Now displaying 1 of 5 with 50 rows per page. This search has taken 5.669s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0013789.1
n.a. n.a. chr0 5219527 5221594 +
2 domain predictions
1 GO term
Lj0g3v0068289.1
n.a. ubiquitin-like protein 5 [Wolffia australiana] gi|374434002|gb|AEZ52393.1| chr0 24442264 24442485 +
3 domain predictions
1 GO term
Lj0g3v0111459.1
n.a. PREDICTED: E3 ubiquitin-protein ligase UPL5-like [Glycine max] gi|356562613|ref|XP_003549564.1| chr0 48419514 48422238 +
4 domain predictions
1 GO term
Lj0g3v0119929.1
n.a. PREDICTED: ubiquitin-NEDD8-like protein RUB2-like [Glycine max] gi|356525758|ref|XP_003531490.1| chr0 53212482 53215346 +
4 domain predictions
1 GO term
Lj0g3v0175819.1
n.a. Polyubiquitin-A [Triticum urartu] gi|474093556|gb|EMS54972.1| chr0 84897532 84899697 +
4 domain predictions
1 GO term
Lj0g3v0178099.1
n.a. polyubiquitin 10 [Arabidopsis thaliana] gi|240255756|ref|NP_849300.4| chr0 86267534 86269597 -
4 domain predictions
1 GO term
Lj0g3v0201989.1
n.a. PREDICTED: probable phosphatidylinositol 4-kinase type 2-beta At1g26270-like [Glycine max] gi|356495721|ref|XP_003516722.1| chr0 99944694 99948327 -
4 domain predictions
1 GO term
Lj0g3v0266149.1
n.a. Ubiquitin-like domain-containing CTD phosphatase [Medicago truncatula] gi|357519321|ref|XP_003629949.1| chr0 137819490 137820187 -
4 domain predictions
1 GO term
Lj0g3v0266149.2
n.a. Ubiquitin-like domain-containing CTD phosphatase [Medicago truncatula] gi|357519321|ref|XP_003629949.1| chr0 137819490 137820410 -
4 domain predictions
1 GO term
Lj0g3v0279589.1
n.a. PREDICTED: probable splicing factor 3A subunit 1-like isoform 1 [Glycine max] gi|356575640|ref|XP_003555946.1| chr0 145125579 145128149 +
4 domain predictions
1 GO term
Lj0g3v0307289.1
n.a. PREDICTED: probable phosphatidylinositol 4-kinase type 2-beta At1g26270-like [Glycine max] gi|356495721|ref|XP_003516722.1| chr0 160407531 160409807 -
4 domain predictions
1 GO term
Lj0g3v0310259.1
n.a. PREDICTED: BAG family molecular chaperone regulator 1-like isoform X1 [Cicer arietinum] gi|502178049|ref|XP_004516168.1| chr0 162008281 162011205 +
2 domain predictions
1 GO term
Lj0g3v0316729.1
n.a. Ubiquitin [Medicago truncatula] gi|358349317|ref|XP_003638685.1| chr0 165460767 165463414 +
4 domain predictions
1 GO term
Lj0g3v0319629.1
n.a. PREDICTED: small ubiquitin-related modifier 2-like [Glycine max] gi|356567836|ref|XP_003552121.1| chr0 166855156 166858608 -
2 domain predictions
1 GO term
Lj0g3v0328939.1
n.a. polyubiquitin, partial [Wolffia australiana] gi|374412404|gb|AEZ49160.1| chr0 171964218 171965972 -
4 domain predictions
1 GO term
Lj0g3v0336129.1
n.a. PREDICTED: BAG family molecular chaperone regulator 4-like [Cicer arietinum] gi|502146919|ref|XP_004506660.1| chr0 176072396 176078856 -
3 domain predictions
1 GO term
Lj0g3v0338909.1
n.a. PREDICTED: ubiquilin-1-like [Glycine max] gi|356501749|ref|XP_003519686.1| chr0 177477416 177484896 -
4 domain predictions
1 GO term
Lj0g3v0345729.1
n.a. Nucleic acid binding,ATP-dependent helicases,ATP binding,helicases,ATP-dependent helicases isoform 1 [Theobroma cacao] gi|508774890|gb|EOY22146.1| chr0 181352044 181359837 -
3 domain predictions
1 GO term
Lj0g3v0358289.1
n.a. PREDICTED: E3 ubiquitin-protein ligase UPL5-like [Glycine max] gi|356520102|ref|XP_003528704.1| chr0 188599547 188601878 -
4 domain predictions
1 GO term
Lj1g3v0052520.1
n.a. PREDICTED: polyubiquitin 3-like [Cicer arietinum] gi|502134206|ref|XP_004502037.1| chr1 498773 499090 +
4 domain predictions
1 GO term
Lj1g3v0052530.1
n.a. PREDICTED: polyubiquitin-like [Fragaria vesca subsp]. vesca] gi|470114108|ref|XP_004293259.1| chr1 511089 511580 +
3 domain predictions
1 GO term
Lj1g3v0683910.1
n.a. Ubiquitin supergroup,Ribosomal protein L40e [Theobroma cacao] gi|508776404|gb|EOY23660.1| chr1 8934391 8935359 +
4 domain predictions
1 GO term
Lj1g3v0984190.1
n.a. Phosphatidylinositol 4-kinase type 2-beta [Medicago truncatula] gi|357463917|ref|XP_003602240.1| chr1 12435629 12438829 -
4 domain predictions
1 GO term
Lj1g3v1035300.1
n.a. Ubiquitin supergroup,Ribosomal protein L40e [Theobroma cacao] gi|508776404|gb|EOY23660.1| chr1 13002759 13005163 +
4 domain predictions
1 GO term
Lj1g3v2372370.1
n.a. PREDICTED: BAG family molecular chaperone regulator 4-like isoform X1 [Cicer arietinum] gi|502104236|ref|XP_004492474.1| chr1 27856882 27860483 +
2 domain predictions
1 GO term
Lj1g3v2996670.2
n.a. PREDICTED: membrane-anchored ubiquitin-fold protein 2-like [Glycine max] gi|356526475|ref|XP_003531843.1| chr1 34139589 34144231 -
2 domain predictions
1 GO term
Lj1g3v3328650.1
n.a. RAD23-like [Solanum tuberosum] gi|77745475|gb|ABB02636.1| chr1 37256074 37261582 +
4 domain predictions
1 GO term
Lj1g3v3729250.1
n.a. PREDICTED: BAG family molecular chaperone regulator 2-like [Cicer arietinum] gi|502091460|ref|XP_004489556.1| chr1 42935652 42936858 -
3 domain predictions
1 GO term
Lj1g3v3891780.1
n.a. PREDICTED: membrane-anchored ubiquitin-fold protein 4 [Vitis vinifera] gi|225451517|ref|XP_002272710.1| chr1 44620282 44626563 -
2 domain predictions
1 GO term
Lj1g3v4764200.1
n.a. PREDICTED: NPL4-like protein 1-like [Cicer arietinum] gi|502112372|ref|XP_004494310.1| chr1 57287489 57291737 -
2 domain predictions
1 GO term
Lj1g3v4764210.1
n.a. PREDICTED: NPL4-like protein 1-like [Cicer arietinum] gi|502112372|ref|XP_004494310.1| chr1 57287775 57291737 -
2 domain predictions
1 GO term
Lj1g3v4917510.1
n.a. PREDICTED: membrane-anchored ubiquitin-fold protein 3 [Vitis vinifera] gi|225436779|ref|XP_002268145.1| chr1 59625672 59629462 +
2 domain predictions
1 GO term
Lj1g3v5034840.1
n.a. Ubiquitin [Medicago truncatula] gi|358349317|ref|XP_003638685.1| chr1 61553415 61556597 +
4 domain predictions
1 GO term
Lj2g3v0435460.1
n.a. PREDICTED: BAG family molecular chaperone regulator 1-like [Cicer arietinum] gi|502119390|ref|XP_004496603.1| chr2 6323493 6326157 -
2 domain predictions
1 GO term
Lj2g3v1155470.1
n.a. Rad23 UV excision repair protein family isoform 1 [Theobroma cacao] gi|508710184|gb|EOY02081.1| chr2 18260546 18268422 +
4 domain predictions
1 GO term
Lj2g3v1415010.1
n.a. Ubiquitin [Medicago truncatula] gi|357519213|ref|XP_003629895.1| chr2 22244732 22245790 -
4 domain predictions
1 GO term
Lj2g3v1549760.1
n.a. PREDICTED: transcription initiation factor TFIID subunit 1-A-like [Glycine max] gi|356529777|ref|XP_003533464.1| chr2 24400353 24418825 +
4 domain predictions
1 GO term
Lj2g3v1549760.2
n.a. PREDICTED: transcription initiation factor TFIID subunit 1-A-like [Glycine max] gi|356529777|ref|XP_003533464.1| chr2 24400353 24418825 +
4 domain predictions
1 GO term
Lj2g3v1644370.2
n.a. PREDICTED: ubiquilin-like [Cicer arietinum] gi|502161708|ref|XP_004512257.1| chr2 25537249 25542791 -
4 domain predictions
1 GO term
Lj2g3v1829920.1
n.a. PREDICTED: polyubiquitin-like [Fragaria vesca subsp]. vesca] gi|470114108|ref|XP_004293259.1| chr2 27648784 27649422 +
4 domain predictions
1 GO term
Lj2g3v2197670.1
n.a. ubiquitin [Laccaria bicolor S238N]-H82] gi|170098594|ref|XP_001880516.1| chr2 32868264 32868815 -
3 domain predictions
1 GO term
Lj2g3v2197670.2
n.a. ubiquitin [Laccaria bicolor S238N]-H82] gi|170098594|ref|XP_001880516.1| chr2 32868264 32868970 -
4 domain predictions
1 GO term
Lj2g3v2197680.1
n.a. ubiquitin [Laccaria bicolor S238N]-H82] gi|170098594|ref|XP_001880516.1| chr2 32868264 32868706 -
4 domain predictions
1 GO term
Lj2g3v2688020.1
n.a. Ubiquitin family protein [Theobroma cacao] gi|508706220|gb|EOX98116.1| chr2 36109614 36110247 +
2 domain predictions
1 GO term
Lj2g3v2879520.1
n.a. PREDICTED: small ubiquitin-related modifier 2-like [Fragaria vesca subsp]. vesca] gi|470136628|ref|XP_004304088.1| chr2 37534649 37537320 +
3 domain predictions
1 GO term
Lj2g3v2879520.2
n.a. PREDICTED: small ubiquitin-related modifier 2-like [Fragaria vesca subsp]. vesca] gi|470136628|ref|XP_004304088.1| chr2 37536575 37537320 +
2 domain predictions
1 GO term
Lj3g3v0707070.1
n.a. Rad23 UV excision repair protein family isoform 1 [Theobroma cacao] gi|508710184|gb|EOY02081.1| chr3 7617384 7624966 +
4 domain predictions
1 GO term
Lj3g3v0950900.1
n.a. n.a. chr3 12357900 12359259 +
4 domain predictions
1 GO term
Lj3g3v0950910.1
n.a. polyubiquitin 14 [Arabidopsis thaliana] gi|30679302|ref|NP_849292.1| chr3 12358086 12360111 -
4 domain predictions
1 GO term
Lj3g3v1340140.1
n.a. PREDICTED: polyubiquitin-like [Glycine max] gi|356547071|ref|XP_003541941.1| chr3 17287739 17288500 -
4 domain predictions
1 GO term