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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0457000 |
Transcript ID | LotjaGi4g1v0457000.5 |
Related isoforms 6 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Protein VAC14 like; TAIR: AT2G01690.1 ARM repeat superfamily protein; Swiss-Prot: sp|Q9ZU97|VAC14_ARATH Protein VAC14 homolog; TrEMBL-Plants: tr|A0A1J7GNE8|A0A1J7GNE8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0457000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:82837738..82838792) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCTGAAATACTGGTACAGAGGGCAGGCTCTCCAGATGAATTTACTAGGCTAACAGCTATCACATGGGTAAGTGGTAT TATAATTCTGACTTAATAGCCCAGTATTTACTGATATAATACCCCTATACTTTAGTTTTGGCATTTTCTCAAAGCTATAC TTGTTTTTTTTATATCAAAGAAATATTATTGGTTACTGATTTGTGATTCACTTACATTTTATATAATTTATGTATGCGCT TTCTTATTTGTACAGATAAATGAGTTTGTCAAACTTGGTGGAGACCAGCTTGTTCCATATTATGCTGACATTCTTGGAGC CATTTTGCCTTGTATATCAGATAAAGAAGAGAAAATTAGAGTTGTAGGTTCACTTGAGCTTTCCTTGTTTTCCTTCCTCT TTCTTCAACCTTTTTTTGTTCTCTGTTTTGCCCCTTTTTCAATTACATTGCTCCCTGCCATGTATACCAACAAGTTTAAA GTTATCTTTGGCATATGTTCAAGGTTGCTCGTGAAACAAATGAAGAGCTACGCACCATCAAGGCTGATCCAGCTGAAGGG TTTGATGTAGGAGCAATTCTCTCCATTGCTAGGAGGTGTGGTTTTTATAGCCTGATTAAAGAGGCTAGGAGTAGGTTTTA ATTTTGTAAGACATGCAATTGAAATATTATGGATTTGTGTAGTGGCTACTTCACCACTTTAGAAACTTTTGGTAAATGAT TGTCAAGGTCTTTTTTGTTTAGCCAAATCTATTTTGCACTGATTATTCTGTGAAATGATTTTGAGTGGTTTTCACTGATC AGGCAATTATCTAGTGACTGGGAGGCTACTCGAATTGAAGCTCTGCACTGGATATCAACCCTTTTAAACAAACATCGTAC TGAGGTGAATTGGTTTCAGCTATTATTTTGTCATTTTTTGAGACCCCTGTAGATCTGTAGAGTTTAGTCTATCTGCTTTC TTAGTATAGCCAATGGAGTTACTTGTGGAAACTAGCTGTTGTTCATGCTCGGAATCATACTAGGTTTTTGGTTAAGGTAC GCTAGGAGTTGGAGC
CDS sequence (LotjaGi4g1v0457000.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGAAATACTGGTACAGAGGGCAGGCTCTCCAGATGAATTTACTAGGCTAACAGCTATCACATGGATAAATGAGTT TGTCAAACTTGGTGGAGACCAGCTTGTTCCATATTATGCTGACATTCTTGGAGCCATTTTGCCTTGTATATCAGATAAAG AAGAGAAAATTAGAGTTGTTGCTCGTGAAACAAATGAAGAGCTACGCACCATCAAGGCTGATCCAGCTGAAGGGTTTGAT GTAGGAGCAATTCTCTCCATTGCTAGGAGGCAATTATCTAGTGACTGGGAGGCTACTCGAATTGAAGCTCTGCACTGGAT ATCAACCCTTTTAAACAAACATCGTACTGAGGTACGCTAG
Protein sequence (LotjaGi4g1v0457000.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEILVQRAGSPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRTIKADPAEGFD VGAILSIARRQLSSDWEATRIEALHWISTLLNKHRTEVR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 118 | 118 | 1.2E-76 | – | |
PANTHER | 1 | 118 | 118 | 1.2E-76 | ||
SUPERFAMILY | 3 | 115 | 113 | 5.28E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Phosphatidylinositol biosynthetic process | The chemical reactions and pathways resulting in the formation of phosphatidylinositol, any glycophospholipid in which the sn-glycerol 3-phosphate residue is esterified to the 1-hydroxyl group of 1D-myo-inositol. | ||
Cellular component | PAS complex | A class III phosphatidylinositol 3-kinase complex that contains a phosphatidylinositol-3-phosphate 5-kinase subunit (Fab1p in yeast; PIKfyve in mammals), a kinase activator, and a phosphatase, and may also contain additional proteins; it is involved in regulating the synthesis and turnover of phosphatidylinositol 3,5-bisphosphate. In mammals the complex is composed of PIKFYVE, FIG4 and VAC14. In yeast it is composed of Atg18p, Fig4p, Fab1p, Vac14p and Vac7p. |
Expression pattern of LotjaGi4g1v0457000.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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