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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0012600 |
| Transcript ID | LotjaGi5g1v0012600.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Bifunctional nuclease 1; TAIR: AT1G75380.1 bifunctional nuclease in basal defense response 1; Swiss-Prot: sp|Q9FWS6|BBD1_ARATH Bifunctional nuclease 1; TrEMBL-Plants: tr|I3T9N9|I3T9N9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0012600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:2731442..2735783) extracted from Lotus japonicus Gifu genome v1.2.
GAAGCTCACGCACGCATGCTCGCTCTCAGTACTCTTGTATTCTTTTTCCACCCGTCACTCTCTCCCTCTGTTTCTTTCTT TGCTTTGACATTTTTCTTAAGGAATCTCTTATCTCCTTCTTCATCTTCTTTCCTAATCCTTACTTCAACGTTGTGTTTTC TCCTAATCACTCCTTAATCAAATTCAAATATTATCAATCCATTCTCCAATTCAGATTTTGTTGCTGCGGTGATCGCTCCC GCGTGATTGTCTTAACCCTTTAAGGAAGGCTCAGAGCAGAAAAAAAGGTAATTCCGATTATCATAATCACTCATTAGTGT TTAATTGCAATCCACGAAAATAAGGCATAAAGTAAAATGATTTTTCCTTAAAAATTCTGAACTTATATCAGTTAATAATT ATTTTAACACTTCAAATTCAATAATTTCTCTGTTTGTTTGTTGTGTACACGTTTGATCATGATCGCAACTATTAAGGTTT CATCGGGTCATGATTTTGCATTTATAGTTTTTTTATTTCTTCCTAATTTAGGATTATATTAATCTAATTACTGGGTGTAG GTAATATTAAGCTAATTAGTGGGTGACGTTCAAAAAAAAAGGTTAATTAGTGGGTGGTTGGGGAGGGGAAGGTCAATAGA TCAATCATTCGTTGACGGGCGTAATTTATCTTTCTAATGTTAAAAAAAAAAATTAATTAGTGAGTCCTGGTGGCATGCTG TGATGATAACCGGAGCCGAACCCACCGAAACTTCTATTCATGGGAAAAAAGCTAGTAATTAGTGTTTTCAGTTTTGTGAC AATGATGATTGATGCAGGTTTTTGTTTTCTTGTGGGTAGGTTTTGAAAATGGGTTCTGTGCAAGGACCAGCTGTGTGTCC ATCTAAACTTGCTGGGTTCTGCAGTCTTCCAATGATGGGGCCAATGAATGTGAGATGTATTAGAAGTGAATTTTTGGGAC TCAATGGCGGCGGTTCCAAGGCTAAGCAGCGGGGTTTCCTTTCTTGCGATGTAAACACACGAAAGTGCTGGACGGTAGTT CGTTGTAGTTTCAATCCATCATCCTCAAATGACAGTGAGAATTTCATTGAAAAAGATGAAGAGTATGTTAACTCTAGTGT GATTGAAGCTGGTATGTTTTAGCTACTACGATAAGTCCGGTTAAAAACGTTGAATTGTTTACTTGATTGTAAGTTAGTTA GCATGATCAGTATCCTAGACAGTGTGCTGATACCACAATGTTATGATTATAAATTGTTTCTAGACTAGATTGCATTTACA AGTAGCTTGCCTTTGGAGATTTCTGTCTGTGATAAAAATATGTGTTTTAATGAAATTGTCGACTTGCGCTAACTGATTGT GTACAATTGCTTGTGCAAGAAGCTTTGGCAAAAAGTGTCTCCTCCCCCCATTTGGCTCTTATGAAATTGCCTTGTTCTGT GATTTTGTTGAATAGTTGAGGTGAAGAGTGGAGCAGATGGTTTCATAATCAAAATGAGGGATGGAAGACACTTGAGATGC GTTCACAACAATCCTCAGGGAGGACATCTTCCAGATTATGCACCACATCCTGCTATTGTATTGAAGATGGAAGATGGGAC TGGTCTACTTCTTCCTATAATTGTTTGTATGTCTTTCTCATACCCTCATATGAATCCAGTTCTTGGATTTGGTTTTGATA GATTCATATACATAGCTCTGTGAATTCCTGGAATGTCTTTATTTGCAGTGGAGATGCCAAGCGTCTTGCTAATGGCAGCA ATACGCGATGTTCCTATAGTATGTCTTCTTTGTCTGATGAATTTCACTATGTTACCCTCACATATATCTGAATATCTCTT TTCCTTCTTCCAGTATGTATAATTAATTAAATGTTTGATCCAGAAAGATTCTGGTTTCATGTAATATAGCCACATGGATA TTAACTATATGTTTGCTGTATCAGGCCAGACCTACTTTGTATCAAGTAGTGAAGGAAATGATTGACAAGATGGGTTATGA AGTATGATTCTGTTTATCTTTATACTCTCACTCCTTATCCTTATTGTATGCTGGTCATTCCATCAGATTGCGTGATGATA TTAATTATTGAATCACGCCATTTCCTGATTTTGTAGGTGAGACTTGTCAGAGTGACTAGGAGAGTCCATGAGGCATATTT TGCCCAGTTGTATCTTACCAAGGCATTTACTTCATCCTCTTCCTCTTCTTTCTCCCCTCCCCTGTCCCTCCCAAATGGGA AAAAAACATACACATTTACATCCAGTGATTGTATGAATATAACAGTACACTTATATTTGATATAGGTTGGGAATGAGGCA GAATGTCGGACTTTCGACCTTCGACCTTCAGATGCTATCAATATTGCAGTAAGATGCAAGGTAATCTTTGTAATTCATGC ATATGAACACATCATCACATACAGGATATTGAATTCCCTGATTGCTTTGCTTGGCAGTTATTCATTTATGCACTGATTGA TGTTTGAAAAAATCAAGTGGTGACATTTTTTTACACTTATCTTTCTAAAAAAGGTTCACTTTGTAGGCAAGTTTTCATAG CCCTGAATGCACTCATGGATTGTTTTGACTAAATGCCAAATCCTAGAGTTGTACTTGTTCACAATGGAACTTGTTTATCA AACGTTTCACCATTTTATCAATGATTTAGGTGCCAATACAAGTCAACAAGTACTTGGCATACAGTGATGGAATGAGAGTA ATTGAATCAGGCAAACTGTCAACACAGTTCCCTGGTTTCGATGGCCGATTATTTACTGAAATGGACCGGTATGTGTGAAA AATACCTTATAGTTAGTAACAATGCAATATGACTTGTCTGTAGTATGTGTAATTTTTCTTTTTTTATTTAAAAATAATAA TAAAATCTTAGTATCTTTTTCATGATTAGTCATTTTTCCATCGTGAAAGACGTCCTTTAGCTAAAGGTGACATAATTGCA GGCCAAATGGTCAGCCATGTGTTGAAACTGAGGAATTCAATCTTTTGCACAACATGTTGAAAGCTGTTGGTGAAGAACGC TATAAAGATGCTGGTAATTATTGTTTTCTTATTAATTCTATAATTTATTGACTTTTTTATGCTCTGGGGCCATTTTTAAT ATATGATTATGATGTATAACAAAAGTGGTTTAGATGTCATATGTGATTGATGATAATGGCTGCCAATCAACAAAGTTATT TGGTCCATAGGCTACAGCCCTGGTTTGACATTTTTTACCTTGTTAGTTGGAGAAGTATCAATTTGTTAACTTTTCTCTTG GATCAGGATTCTCTCTTGTTACCAACATGAGGGGGTCTTGTTATGTGAAAGATACCAAAATAATAAGAGCCACTGTTATT CGAAGGCCCTTAATTTTTTGTGTCCTCTCTCTTATTACATGACCTTTTTATAAGTTACATGAGAGCATCCTAGTCCTTTC CTCTTTCACTACCTTTCTAGTCTATAGGCATTTGCTAGTGTCAGTTTTGATCAAAATAAATTGCTATGCCGCATGCCCCA AGAATTAAGAAGAAAACCTTTGATATTGACTTAATGAAATTCAGTTGTCTAGATAAGTGACTTTTTTCAGTACATGCATT TAATTAAATTGCAAATAACGATTGCATGTCATATGGACTGGAGTTTAAATTGTACATCTCTGATGTTATTACTTTTACAT GTCATGATTCTGATGCAACTTCAGCTTTGTGGAGGGACAGACTTAATCAACTTAGGGCTGGAAAAAATGTGAATAACAGG TATGGAGTTTAGTTTATATGACAAATTTACATTATGCACCGCCGTGAGAATTCTCTAGCCGAGTCATTTCACCCTAACCC ATAACCTTCTTCTGGCCTTCATTTCGTTCTGTGAGACAGCTTTGAGAATGTTGACATATTTTGTTGCAGATCCTGGACAC TTTAGTTGTACATACAATACAATATTAGAATACCAATGGAATTCGATGCAGAAATAGTAGCCACGTCTCTCCCTTCCTTG GTCTATATTATGCTTAAAATGTGAATAATTGTATATATTTCTGAACATTAATGTTAATGTATCATCATGTGGAACTTTTC AGTACTTTTCTGAAACTTCTGAGAAGCTGTTAATATGTAATGTGGTTTCACTCATGGGTCCCGGCATGTCGCTGATGGTT ATGTTTCGCTGTGTAATTAACATATTTGGGATGGTTGGATAAAATCATGTAAATCAATTACCTAGTTCTATGTTTTTTTG TGCATTCCTTGCTTAGAGAAACTCTTAAAGGCATGGTTACAATGAGGGATCAAATAACCTTTCACAATGTAAATTCAATT AAACTCTTTATCTTAATTACAG
CDS sequence (LotjaGi5g1v0012600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTTCTGTGCAAGGACCAGCTGTGTGTCCATCTAAACTTGCTGGGTTCTGCAGTCTTCCAATGATGGGGCCAATGAA TGTGAGATGTATTAGAAGTGAATTTTTGGGACTCAATGGCGGCGGTTCCAAGGCTAAGCAGCGGGGTTTCCTTTCTTGCG ATGTAAACACACGAAAGTGCTGGACGGTAGTTCGTTGTAGTTTCAATCCATCATCCTCAAATGACAGTGAGAATTTCATT GAAAAAGATGAAGAGTATGTTAACTCTAGTGTGATTGAAGCTGTTGAGGTGAAGAGTGGAGCAGATGGTTTCATAATCAA AATGAGGGATGGAAGACACTTGAGATGCGTTCACAACAATCCTCAGGGAGGACATCTTCCAGATTATGCACCACATCCTG CTATTGTATTGAAGATGGAAGATGGGACTGGTCTACTTCTTCCTATAATTGTTTTGGAGATGCCAAGCGTCTTGCTAATG GCAGCAATACGCGATGTTCCTATAGCCAGACCTACTTTGTATCAAGTAGTGAAGGAAATGATTGACAAGATGGGTTATGA AGTGAGACTTGTCAGAGTGACTAGGAGAGTCCATGAGGCATATTTTGCCCAGTTGTATCTTACCAAGGTTGGGAATGAGG CAGAATGTCGGACTTTCGACCTTCGACCTTCAGATGCTATCAATATTGCAGTAAGATGCAAGGTGCCAATACAAGTCAAC AAGTACTTGGCATACAGTGATGGAATGAGAGTAATTGAATCAGGCAAACTGTCAACACAGTTCCCTGGTTTCGATGGCCG ATTATTTACTGAAATGGACCGGCCAAATGGTCAGCCATGTGTTGAAACTGAGGAATTCAATCTTTTGCACAACATGTTGA AAGCTGTTGGTGAAGAACGCTATAAAGATGCTGCTTTGTGGAGGGACAGACTTAATCAACTTAGGGCTGGAAAAAATGTG AATAACAGATCCTGGACACTTTAG
Protein sequence (LotjaGi5g1v0012600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSVQGPAVCPSKLAGFCSLPMMGPMNVRCIRSEFLGLNGGGSKAKQRGFLSCDVNTRKCWTVVRCSFNPSSSNDSENFI EKDEEYVNSSVIEAVEVKSGADGFIIKMRDGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLM AAIRDVPIARPTLYQVVKEMIDKMGYEVRLVRVTRRVHEAYFAQLYLTKVGNEAECRTFDLRPSDAINIAVRCKVPIQVN KYLAYSDGMRVIESGKLSTQFPGFDGRLFTEMDRPNGQPCVETEEFNLLHNMLKAVGEERYKDAALWRDRLNQLRAGKNV NNRSWTL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 319 | 319 | 4.1E-160 | – | |
| PANTHER | 1 | 319 | 319 | 4.1E-160 | – | |
| ProSiteProfiles | 116 | 251 | 136 | 37.223 | ||
| SUPERFAMILY | 116 | 254 | 139 | 2.22E-37 | ||
| Gene3D | 123 | 256 | 134 | 1.1E-22 | ||
| Pfam | 132 | 246 | 115 | 6.4E-21 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nuclease activity | Catalysis of the hydrolysis of ester linkages within nucleic acids. |
Expression pattern of LotjaGi5g1v0012600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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