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LotjaGi5g1v0022300.1

Overview

Field Value
Gene ID LotjaGi5g1v0022300
Transcript ID LotjaGi5g1v0022300.1
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Uroporphyrinogen decarboxylase; TAIR: AT3G14930.1 Uroporphyrinogen decarboxylase; Swiss-Prot: sp|Q93ZB6|DCUP1_ARATH Uroporphyrinogen decarboxylase 1, chloroplastic; TrEMBL-Plants: tr|I3SP94|I3SP94_LOTJA Uroporphyrinogen decarboxylase; Found in the gene: LotjaGi5g1v0022300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:3989171..3995265) extracted from Lotus japonicus Gifu genome v1.2.

TATAAACTTAACCCAGTCAGCTGGCCAATTCATCACTCGTCGGAGCTCCGGCGAGGACCTGCTCCACACAAATTGCAAAA GAGAGGACCCAGATTTATAAATTTTCCGGGGAGGGACTGATTTCAGACGGCGAGACAAAGACAGAGGTCAAGTAGACGAT TAACCCTTCTTTTAAATATCAAAAGAAAAAAGAAAAAAATGAATTTATACGCACTTTAGGGGTAAAGGGTATTTGTGGAA AAGTAAAATCATGACAGGGATAATATAGTACTTTCGATAATTTCGGTGAAGGTAGTCCCCACTGTGAGAATGGTCGAAGG GGGAAGAAGAAGACGAAGGTGAGGTTTGAATTGAGGGATAAGGCTAAAATCTGCAGAACCTTCTTCCATCTCTGCACATG GCTACTTCCATTAACAGGTTTCAACTCTCTCTCTCTCTCTCTCTCTCTCTCATTTTCTCTCTTTCACAGATGAGATGAAT TTTGAGTTCAATGTTGTTATGACCTGTTAATTTCATTCTTTTCAGCTGTGGTTTGGGATGGAAATCTTCCTCCTTGTTTG CACACTCAACTTCTACTGGCTTCAATTTGATTTCTCCTTCTTTCAAACCAAAACCCAAGTTTTCTCTCACTTGCTCCGCT GCCTCCTCTTCTTCTGGTACCCTCCTTCTCTCAACATTTTCAACACCACTTGTTTCTTATAAGTTATATGGGTGCTTATA ATTTGTGGGTTTCAATAAAGTTTTAAACTTGCTGTTATTGACTTTGAAGAAACATTGTTCTTATAGCCCACAGCCCACTC ATTCTCATGACAGATTTTGATCATTGCTTTATTGGTTAGAAAACCTATAATAGTCACTCTTTTGGTTCATTAATTTTAAC TTCACAGACTTTGCATTTCATGATGTGCCCACCTCCATGCCCATGGTATTTGTTTGGGAGTCTTTTGGAATCAAAACGTA GGTTTTGTATCTATGACATTATATCAATTGTGGGATTTTGGGGTGTATTGTGATTCATACTTCTTGTTAGCACTGAAGGA ATGAAGGGTCTTTGAAGAGTACATTACCATTTGTGCCTAGAAGCCGTTTAACTTAGTTTCAGTATTTGCAATTGTCTGTT GGTCCATTTGACAAGGAATTTGGTTCTCCTGTATTAAGGTCTTAGCTTTTCATTTAACTTGATTTGTTTTCGTATGCAAG AGAAATTGACTTGGATGTTGTGTTTCATTTTATTCAGATCCGCTCTTGGTTAAGGCTGCTAGGGGAGATCCTGTTAGTCG TCCTCCAGCATGGATGATGCGCCAGGCGGGAAGGTACATGGCTGTTTACAGAAAGCTTGCTGAGAAGCATCCCTCATTTC GAGAGAGATCAGAGACAACTGATCTCATTGTGGAAATTTCTTTGCAGCCTTGGAAAGCTTTCAGGCCTGATGGAGTGATT ATTTTCTCTGACATCCTTACACCTCTACCTGCATTTGGAATTGAATTTGACATAGAAGATGTAAGGGGACCTGTTATACA GTCACCTATTCGCTCTGAGGAGGGATTAAAGGCTTTGCACTCAATCGACTTGGACAGACTTAGATTTGTTGGAGATTCAC TTAAGCTCCTGCGCCAGGAGGTACAATATAGTTACATCAGCTCATCTGCGGTGTGTTTGGATTTCTATTCTGAAAACTTA AATGTACTTTCAATGAAAATCCATGTCTCTGTAATGGATTGGGATGAAAGTTCTTTTATATCAATGTAATGTAAATCCAA ACACGCTTAGCCTGTTCCCATTTCTAATTCATTTTTCTGTAGGTTGGTGGTCATGCTGCCGTTTTGGGTTTTGTGGGAGC ACCTTGGACATTGGCAACATATATAGTGGAAGGGGGTACGACACGCACTTACACAACCATTAAGAGCATGTGCCATACAG CACCAGACATATTGAGGACTCTGCTTTCTCATTTGTCACAGGCGATAGCAGATTACATTGTTTTCCAAGTTGAATCTGGG GCTCACTGCATACAAATATTTGATTCTTGGGGTGGACAATTACCACCTAGTATGTGGGAAAGCTGGTCAAAGCCTTATAT CACCGAGGTAACTAAGGAAAATTCTTTCTTCCCTGATAATTTTGTGTTTTAATGTTTTAAACTTTTCAATGTTAAGCCTA ACATTGGAAATTTTCTTCAGTTGAAGAAAGTAAAAAGACATAGCTTGATGAGCTGTGCAAAAATTATTAGGTTTTATGTC AAGTTAATTTTGTATTGTTCCAAGCATCCATCATTATTCTTGGTTAGTTGACCTGGTAAAGAATATAATAAAAGCTTGTA ATATGTAATTTCTCATGGGTAAAAAACCTTGCTATTTGTGAGCCTTGATTAATAAATGAGCTCATTGGAAGTTAATCATG CTTTTGACTTCAGGAGAGAGAAATCCAAATCAGAGGCGGTATCTTCACATTTTTATAAATATAGTTGAGATAAATACTAC TGTTAGTATCTTTTCTTATTTTACAATTGAATAAAATTAGCAAATTGAAGGTTGCATACTATCATGCCAATCTCCTCTTT TTATCCTTTTCATCACGCACTGCTTTTTGAACTTCCAGATTGTAAAAGTGGTCAAGAAAAAATGCCCCGAGACACCAATC GTTCTTTATATAAATGGAAATGGCGGCCTTCTCGAGCGTATGGTAGACACTGGAGTTGATGTTATTGGACTAGACTGGAC AGTGGATAAGGCAGATGGAAGAAGAAGATTGGGTAGTGGGATAGGTGTGCAGGGAAATGTGGACCCTGCCTCCCTATTCT CCCCTCTTTCTTCCCTTACTGAAGAAATTCAGAGGTTGGTAACAACATATCTATGACCTTTGGTATTTTTTTATGTCATT CTGATAGGTACAGTAAATGAGAAGAAAAATTGTTATTATTCACCAATATCAATGAACTACAATTACTGGTTGTTTGAGAG AACCAGCACACTCCCTAGAATTCCCTTACTACAAACAAGATACCCTAACTATTCTCATATCCCTCTTATTTATAGTCTTG CTTCACTCTCTCTAATCTCTAACCAACTCTCTAACTAACAACATGATTTTCCTAACTAACTAACTAAATAACTAAAGGGT GGTTATCTATCACAATCTATATGGTTGTTGGCATATTTGGTCTAAGGGAGCTACACCACTGAGTGGTGTCTAAGCTTAAG TGATGGGAGGAAGGGGAATCGGAAAGAGATTTTCCATCAGGGGGTGCTGAACCTGATACTGGGATGTTCCAGACAAATGT CCAGGCTGTATTGTTTCTGTCCATGATCCATTATCTAAGCTGTGTCGGTTGAGACCTCCCCCAACATTTGCCTATTAACT GCAGAACTGAAAATAATGATACGAGTCAGGGAAACTGGCCAAGAATCAGGCAATATTCTTTATCTTGTTCACGAAGCTAC AATATGTAACTTTTACTCTCGACATGCATTGGATTCTGTGTCAAACTGGCAGCCATACGTGTAGTATGTGTGTTTGGCTG CACTGCAGGCACAAAACCCAGTGTGTTAAATGTAAAAACTGTGTCATAACTTCATTTTATGTGATTCTAGCATATTATGA AGTGCATCCCAACATTCTATTTGTTTCAAAATTATGAATTGGTTCAATTGGACTATTGTGCATTTGTGCTTTTTGAGAGA AAGACCACTGTTTTGTCTGACTCGGTGGCAGAAGATGATACCAGTGTGTCCAATTGAACCCTCAGAGAGTCATAGTCATA CATGAGAATGGATACATGACTTGTGTTAATTAGTTTTCTTAACTTCTAATATGATAATTATTTTCAGGGTTGTGAAGTGT GCGGGGCCTAGAGGGCACATCCTTAATCTTGGGCACGGTGTTCTTGTTGGCACACCTGAAGAAGCTGTTGCACATTTCTT TGAAGTAGCAAGGAGCTTGAAATTCGACACACACTTTCAGAATACAACTGCAAATGATCCTGAACTTGTAATTTAATGAC AAATGCTGCTAGTGGTGGAGTGCAAGCCCTTCTCTAGAAGAGTGCAAGCTTAGTTGTGATGATCAAAGTTATGAGGATTT GCACATTGTTGTGCCGGCGGCTAACCGATGAAACTAGACAAATATGTGATTTTCCAGTATGCATAAATTAAGTAGAGGAT TCCTTCCTATTGTTTATTTTTGGATTCTTACAACTGGAAACTCATGTTGCAGTTTTCAATTAAGGTATAAGAAGCCATTC TAAGGACAATGACTAGGCTAACAACACATTGATTGTAGACGTGAGCATTTTTCGAGTGGTTGAAGAGTTTATCCCTCTCA CTGCAGTGAATTCTCCGGGGAAGAGGAGGGGTAGGAAGTCAGTAGCCAGTATTGCTTAGACAGAAGTTTAGGAGGGCATT TCTGTTGTGTGAGTAAAGTGTCATTGTTGGAATGCAATATTGTAGAACTGTTTAGGGTCACAGACCAAGTTCCATGGTTT GTTTGTAGAGTCTGGATGTTGTCATGTTGGATTGTTTTAACTTTTCAAATCTTCTAAGAGGGTACTTAATTAACTACGTA CATCTCGACCTTTTATTGTTAAAATTTGAAATGATGGGCTGCATTTCCTCATTTTGCAAAATTGCACTTTAACATAACTT TTTGAAAGATAGAATTCCAGGTAATGGCTTATTGCAAGTTTGGAAATTATTTATAATTGATTCTGAAGGTAAAATTAATT TTAGGGAAAAGCTTATGTTAGTAGCTACTGAGTGCTAGAATCATAAATTTACTCTTCTGAGGAGAAAGAATCTGATTTAA ACATGCTGTTAATGGATTTCATCAAGATATTGTGTTTGTATTTGCTTGTGAAAGTATATAGCTAATGTGCTTAGTTGTTA TCATTTGGCATGATCCAAAATAGTTCCTTACCAAGCCAGCTAATCATGTTCTCTATCTTTAGGTCAACCTTCCCAAATAC AATTTGATCATCTGTGACATCTCTGTTCTCAGGTAAGTTGTATATGAGCCTTTTAGTTTCACTCCAACATTGAACGATGG TTACTAGTTCTTGGTAAATTTGGTATTGAAGATTCAACAGTTTGGATGTTTACTATTATTTGTGGCTTGAACCCCCATTA TTTAGCTGTTGGTGATGAGTAAATTTTGTTTCTTCAGTATTTAATGTGTGAATTTGTGTTATGTTTTTCAGATGTATTAT ATTTCTGTAGTTTCCTTGGATTGTAAGGGTCGTTTAAGAGCTTTGTATTTATTCTTCATTACTACAAAAAATTAAGGCTG CTCAGAAATAAAATGAATTTTTTTTGGGGAAAGTTCTGCATATCAGTATATCATTCAATAACTGCAATTCCAGAGGAATT ACAAAGTCTAGCATCATTTGAGATCAAAAGAGAAATGCTGATGGGAGCACTCTCAACCCGAACTTGATCATGATAATTAA AAGCAAGATGAGCTATAGAAGGTATCAACTACACCATTAGCCGTTCTTTTACCATGCTGTATCCTACATGAACTGAAGGA AGCTCCAAGAGACTTGCATTGCAGTCTTTAATTATCGCATCCACATAAGTTTTATGCACTTCCACTCTCTGCCAAGCATA AACCAGTCTAATGCAATCTGTCTCCAGTTCCAGCCGCTGAAGACCGAGATCCATAGCCAGCTGAAGGCACCAGCGCATCC CCAGTGCCCCTACTACTGTAATCCCATGAGCAACTGGAAGGAATTTTGATGTTGAGGCCATAAGGTTACCATCTTCATCC CTACACCCAGCCCCTAGTCCTGTGCCAATGTTTCCTTTGACTGATGCATCAGCATTTGCCTTGATAAAGCCATTCCTAGG TGCAACCCAATAAAAGATTGCAGAATTTTGCCTCTGAGATTGATGGCTGGGGCTACTGCCTTTGAAGCTGCACCATAAAG GCCGAGATGACTACCTGCAGGTCCTCCATACGTTAACTTGTATACCACGCCAAAGAAGATATCAAGATAAGCTCGCGGCA CCTGGGTTACACCTCAACATCCCAAATATCAGACCAAGGTTGGCTTGCCGAGGTTGTGTTCGATGAAGATAAGGCCTGGT TATCATAGTCCTGGA
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0022300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTACTTCCATTAACAGCTGTGGTTTGGGATGGAAATCTTCCTCCTTGTTTGCACACTCAACTTCTACTGGCTTCAA TTTGATTTCTCCTTCTTTCAAACCAAAACCCAAGTTTTCTCTCACTTGCTCCGCTGCCTCCTCTTCTTCTGATCCGCTCT TGGTTAAGGCTGCTAGGGGAGATCCTGTTAGTCGTCCTCCAGCATGGATGATGCGCCAGGCGGGAAGGTACATGGCTGTT TACAGAAAGCTTGCTGAGAAGCATCCCTCATTTCGAGAGAGATCAGAGACAACTGATCTCATTGTGGAAATTTCTTTGCA GCCTTGGAAAGCTTTCAGGCCTGATGGAGTGATTATTTTCTCTGACATCCTTACACCTCTACCTGCATTTGGAATTGAAT TTGACATAGAAGATGTAAGGGGACCTGTTATACAGTCACCTATTCGCTCTGAGGAGGGATTAAAGGCTTTGCACTCAATC GACTTGGACAGACTTAGATTTGTTGGAGATTCACTTAAGCTCCTGCGCCAGGAGGTTGGTGGTCATGCTGCCGTTTTGGG TTTTGTGGGAGCACCTTGGACATTGGCAACATATATAGTGGAAGGGGGTACGACACGCACTTACACAACCATTAAGAGCA TGTGCCATACAGCACCAGACATATTGAGGACTCTGCTTTCTCATTTGTCACAGGCGATAGCAGATTACATTGTTTTCCAA GTTGAATCTGGGGCTCACTGCATACAAATATTTGATTCTTGGGGTGGACAATTACCACCTAGTATGTGGGAAAGCTGGTC AAAGCCTTATATCACCGAGATTGTAAAAGTGGTCAAGAAAAAATGCCCCGAGACACCAATCGTTCTTTATATAAATGGAA ATGGCGGCCTTCTCGAGCGTATGGTAGACACTGGAGTTGATGTTATTGGACTAGACTGGACAGTGGATAAGGCAGATGGA AGAAGAAGATTGGGTAGTGGGATAGGTGTGCAGGGAAATGTGGACCCTGCCTCCCTATTCTCCCCTCTTTCTTCCCTTAC TGAAGAAATTCAGAGGGTTGTGAAGTGTGCGGGGCCTAGAGGGCACATCCTTAATCTTGGGCACGGTGTTCTTGTTGGCA CACCTGAAGAAGCTGTTGCACATTTCTTTGAAGTAGCAAGGAGCTTGAAATTCGACACACACTTTCAGAATACAACTGCA AATGATCCTGAACTTGTAATTTAA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0022300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MATSINSCGLGWKSSSLFAHSTSTGFNLISPSFKPKPKFSLTCSAASSSSDPLLVKAARGDPVSRPPAWMMRQAGRYMAV YRKLAEKHPSFRERSETTDLIVEISLQPWKAFRPDGVIIFSDILTPLPAFGIEFDIEDVRGPVIQSPIRSEEGLKALHSI DLDRLRFVGDSLKLLRQEVGGHAAVLGFVGAPWTLATYIVEGGTTRTYTTIKSMCHTAPDILRTLLSHLSQAIADYIVFQ VESGAHCIQIFDSWGGQLPPSMWESWSKPYITEIVKVVKKKCPETPIVLYINGNGGLLERMVDTGVDVIGLDWTVDKADG RRRLGSGIGVQGNVDPASLFSPLSSLTEEIQRVVKCAGPRGHILNLGHGVLVGTPEEAVAHFFEVARSLKFDTHFQNTTA NDPELVI
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR21091
34 402 369 1.1E-229 –
PANTHER
PTHR21091:SF167
34 402 369 1.1E-229 –
Gene3D
G3DSA:3.20.20.210
42 391 350 4.5E-129
IPR038071
Hamap
MF_00218
50 390 341 40.396
IPR006361
Pfam
PF01208
52 388 337 8.6E-110
IPR000257
SUPERFAMILY
SSF51726
53 390 338 1.83E-99
IPR038071
TIGRFAM
TIGR01464
54 387 334 1.1E-120
IPR006361
CDD
cd00717
56 388 333 7.77264E-170
IPR006361
ProSitePatterns
PS00906
67 76 10 -
IPR000257
ProSitePatterns
PS00907
186 202 17 -
IPR000257

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004853
Molecular function Uroporphyrinogen decarboxylase activity Catalysis of the reaction: uroporphyrinogen-III = coproporphyrinogen + 4 CO2.
Subterm of
GO:0006779
Biological process Porphyrin-containing compound biosynthetic process The chemical reactions and pathways resulting in the formation of any member of a large group of derivatives or analogs of porphyrin. Porphyrin consists of a ring of four pyrrole nuclei linked each to the next at their alpha positions through a methine group.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0022300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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