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GO:0006779

View this GO term in other databases

Overview

Field Value
Namespace Biological process
Short description Porphyrin-containing compound biosynthetic process
Full defintion The chemical reactions and pathways resulting in the formation of any member of a large group of derivatives or analogs of porphyrin. Porphyrin consists of a ring of four pyrrole nuclei linked each to the next at their alpha positions through a methine group.
Subterm of

Relationships

The relationship of GO:0006779 with other GO terms.

Relationship type GO terms
Is a
Regulates n.a.
Part of n.a.
Positively regulates n.a.
Negatively regulates n.a.

Ancestor tree

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Additional data

This table contains additional metadata associated with the GO entry's definition field.

Field Value
GOCjl
ISBN

· ISBN: 0198506732

, · pages

Associated Lotus transcripts 26

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Transcript Name Description GO terms GO count
Lj0g3v0060729.1
– PREDICTED: coproporphyrinogen-III oxidase, chloroplastic-like [Glycine max] gi|356553641|ref|XP_003545162.1|
GO terms
3
Lj0g3v0131529.1
– PREDICTED: oxygen-independent coproporphyrinogen-III oxidase-like protein sll1917-like [Cicer arietinum] gi|502133605|ref|XP_004501826.1|
GO terms
4
Lj0g3v0271849.1
– PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic-like [Glycine max] gi|356544092|ref|XP_003540489.1|
GO terms
2
Lj0g3v0271849.3
– PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic-like [Glycine max] gi|356544092|ref|XP_003540489.1|
GO terms
2
Lj0g3v0276659.1
– PREDICTED: protoporphyrinogen oxidase, chloroplastic-like [Cicer arietinum] gi|502117534|ref|XP_004495854.1|
GO terms
3
Lj0g3v0276659.2
– PREDICTED: protoporphyrinogen oxidase, chloroplastic-like [Cicer arietinum] gi|502117534|ref|XP_004495854.1|
GO terms
3
Lj0g3v0326149.1
– PREDICTED: uroporphyrinogen decarboxylase, chloroplastic-like [Glycine max] gi|356540042|ref|XP_003538500.1|
GO terms
2
Lj0g3v0326149.2
– Uroporphyrinogen decarboxylase [Medicago truncatula] gi|357461511|ref|XP_003601037.1|
GO terms
2
Lj1g3v3834100.1
– Protoporphyrinogen IX oxidase [Glycine max] gi|351726950|ref|NP_001236376.1|
GO terms
3
Lj1g3v3834100.2
– Protoporphyrinogen IX oxidase [Glycine max] gi|351726950|ref|NP_001236376.1|
GO terms
3
Lj3g3v0306950.1
– Coproporphyrinogen III oxidase [Ziziphus jujuba] gi|197725645|gb|ACH73029.1|
GO terms
3
Lj3g3v0306960.1
– PREDICTED: coproporphyrinogen-III oxidase, chloroplastic-like [Cicer arietinum] gi|502100078|ref|XP_004491630.1|
GO terms
3
Lj3g3v2986080.1
– PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic-like [Glycine max] gi|356544092|ref|XP_003540489.1|
GO terms
2
LotjaGi1g1v0003900.1
– Oxygen-dependent coproporphyrinogen-III oxidase; TAIR: AT1G03475.1 Coproporphyrinogen III oxidase; Swiss-Prot: sp|P35055|HEM6_SOYBN Oxygen-dependent coproporphyrinogen-III oxidase, chloroplastic; TrEMBL-Plants: tr|A0A0L9UU22|A0A0L9UU22_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0003900
GO terms
3
LotjaGi1g1v0234800.1
– Oxygen-independent coproporphyrinogen III oxidase, putative; TAIR: AT5G63290.1 Radical SAM superfamily protein; Swiss-Prot: sp|P73245|Y1917_SYNY3 Oxygen-independent coproporphyrinogen-III oxidase-like protein sll1917; TrEMBL-Plants: tr|V7AWC4|V7AWC4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0234800
GO terms
4
LotjaGi2g1v0305200.1
– Uroporphyrinogen decarboxylase; TAIR: AT3G14930.1 Uroporphyrinogen decarboxylase; Swiss-Prot: sp|Q93ZB6|DCUP1_ARATH Uroporphyrinogen decarboxylase 1, chloroplastic; TrEMBL-Plants: tr|I3SP94|I3SP94_LOTJA Uroporphyrinogen decarboxylase; Found in the gene: LotjaGi2g1v0305200
GO terms
2
LotjaGi2g1v0305200.2
– Uroporphyrinogen decarboxylase; TAIR: AT3G14930.1 Uroporphyrinogen decarboxylase; Swiss-Prot: sp|Q93ZB6|DCUP1_ARATH Uroporphyrinogen decarboxylase 1, chloroplastic; TrEMBL-Plants: tr|I3SP94|I3SP94_LOTJA Uroporphyrinogen decarboxylase; Found in the gene: LotjaGi2g1v0305200
GO terms
2
LotjaGi2g1v0305200.3
– Uroporphyrinogen decarboxylase; TAIR: AT3G14930.1 Uroporphyrinogen decarboxylase; Swiss-Prot: sp|Q93ZB6|DCUP1_ARATH Uroporphyrinogen decarboxylase 1, chloroplastic; TrEMBL-Plants: tr|I3SP94|I3SP94_LOTJA Uroporphyrinogen decarboxylase; Found in the gene: LotjaGi2g1v0305200
GO terms
2
LotjaGi3g1v0025400.1
– Oxygen-dependent coproporphyrinogen-III oxidase; TAIR: AT1G03475.1 Coproporphyrinogen III oxidase; Swiss-Prot: sp|P35055|HEM6_SOYBN Oxygen-dependent coproporphyrinogen-III oxidase, chloroplastic; TrEMBL-Plants: tr|I3SZR7|I3SZR7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0025400
GO terms
3
LotjaGi5g1v0022300.1
– Uroporphyrinogen decarboxylase; TAIR: AT3G14930.1 Uroporphyrinogen decarboxylase; Swiss-Prot: sp|Q93ZB6|DCUP1_ARATH Uroporphyrinogen decarboxylase 1, chloroplastic; TrEMBL-Plants: tr|I3SP94|I3SP94_LOTJA Uroporphyrinogen decarboxylase; Found in the gene: LotjaGi5g1v0022300
GO terms
2
LotjaGi5g1v0022300.2
– Uroporphyrinogen decarboxylase; TAIR: AT3G14930.1 Uroporphyrinogen decarboxylase; Swiss-Prot: sp|Q93ZB6|DCUP1_ARATH Uroporphyrinogen decarboxylase 1, chloroplastic; TrEMBL-Plants: tr|I3SP94|I3SP94_LOTJA Uroporphyrinogen decarboxylase; Found in the gene: LotjaGi5g1v0022300
GO terms
2
LotjaGi5g1v0022300.3
– Uroporphyrinogen decarboxylase; TAIR: AT3G14930.1 Uroporphyrinogen decarboxylase; Swiss-Prot: sp|Q93ZB6|DCUP1_ARATH Uroporphyrinogen decarboxylase 1, chloroplastic; TrEMBL-Plants: tr|I3SP94|I3SP94_LOTJA Uroporphyrinogen decarboxylase; Found in the gene: LotjaGi5g1v0022300
GO terms
2
LotjaGi5g1v0022300.4
– Uroporphyrinogen decarboxylase; TAIR: AT3G14930.1 Uroporphyrinogen decarboxylase; Swiss-Prot: sp|Q93ZB6|DCUP1_ARATH Uroporphyrinogen decarboxylase 1, chloroplastic; TrEMBL-Plants: tr|I3SP94|I3SP94_LOTJA Uroporphyrinogen decarboxylase; Found in the gene: LotjaGi5g1v0022300
GO terms
2
LotjaGi5g1v0237400.1
– Protoporphyrinogen oxidase; TAIR: AT4G01690.1 Flavin containing amine oxidoreductase family; Swiss-Prot: sp|P55826|PPOC_ARATH Protoporphyrinogen oxidase 1, chloroplastic; TrEMBL-Plants: tr|A0A151SSA5|A0A151SSA5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0237400
GO terms
3
LotjaGi6g1v0083500.1
– Uroporphyrinogen decarboxylase; TAIR: AT2G40490.1 Uroporphyrinogen decarboxylase; Swiss-Prot: sp|Q42967|DCUP_TOBAC Uroporphyrinogen decarboxylase, chloroplastic; TrEMBL-Plants: tr|I3TAG7|I3TAG7_LOTJA Uroporphyrinogen decarboxylase; Found in the gene: LotjaGi6g1v0083500
GO terms
2
LotjaGi6g1v0083500.2
– Uroporphyrinogen decarboxylase; TAIR: AT2G40490.1 Uroporphyrinogen decarboxylase; Swiss-Prot: sp|Q42967|DCUP_TOBAC Uroporphyrinogen decarboxylase, chloroplastic; TrEMBL-Plants: tr|I3TAG7|I3TAG7_LOTJA Uroporphyrinogen decarboxylase; Found in the gene: LotjaGi6g1v0083500
GO terms
2

Co-occuring GO terms 1

A list of co-occurring GO terms within the L. japonicus gene space:

GO term Namespace Name Observations Saturation (%)
GO:0006779
Biological process Porphyrin-containing compound biosynthetic process 1 3.85