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GO:0006779

Overview

Field Value
Namespace Biological process
Short description Porphyrin-containing compound biosynthetic process
Full defintion The chemical reactions and pathways resulting in the formation of any member of a large group of derivatives or analogs of porphyrin. Porphyrin consists of a ring of four pyrrole nuclei linked each to the next at their alpha positions through a methine group.
Subterm of

Relationships

The relationship of GO:0006779 with other GO terms.

Relationship type GO terms
Is a
Regulates n.a.
Part of n.a.
Positively regulates n.a.
Negatively regulates n.a.

Ancestor tree

A force layout showing the ancestor tree for GO:0006779, and its immediate children. If you wish to explore the tree dynamically, please use the GO Explorer.

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Additional data

This table contains additional metadata associated with the GO entry's definition field.

Field Value
GOCjl
ISBN
Oxford Dictionary of Biochemistry and Molecular BiologyOxford Dictionary of Biochemistry and Molecular Biology

Anthony David Smith,Anthony Donald Smith · ISBN: 0198506732

Oxford University Press, USA, 2000 · 760 pages

This book provides a survey of current biochemistry and molecular biology in the form of a dictionary. It contains short but informative entries arranged under more than 17,000 headwords, providing fundamental but up-to-date information that is often difficult to locate in today'soverspecialized world. The book is intended as a handy reference of first resource for those seeking information outside their immediate knowledge area or for those who need to refresh their memory of fundamental knowledge. It gives the meanings of many terms used in molecular biology and describes the essential featuresof over approximately 2,000 enzymes and proteins, describing the reactions they catalyse or functions they perform, and includes filenames that facilitate the location of entires in databases of sequences. Many entries describe chemical compounds of relevance to biochemists, with approximately 950symbols and abbreviations. In addition, many physico-chemical laws, constants, and formulae are detailed. This revised edition has been fully up-dated in order to include the new information that has been discovered since the original edition was published in 1997.

Associated Lotus transcripts 26

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Transcript Name Description GO terms GO count
PREDICTED: coproporphyrinogen-III oxidase, chloroplastic-like [Glycine max] gi|356553641|ref|XP_003545162.1| 3
PREDICTED: oxygen-independent coproporphyrinogen-III oxidase-like protein sll1917-like [Cicer arietinum] gi|502133605|ref|XP_004501826.1| 4
PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic-like [Glycine max] gi|356544092|ref|XP_003540489.1| 2
PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic-like [Glycine max] gi|356544092|ref|XP_003540489.1| 2
PREDICTED: protoporphyrinogen oxidase, chloroplastic-like [Cicer arietinum] gi|502117534|ref|XP_004495854.1| 3
PREDICTED: protoporphyrinogen oxidase, chloroplastic-like [Cicer arietinum] gi|502117534|ref|XP_004495854.1| 3
PREDICTED: uroporphyrinogen decarboxylase, chloroplastic-like [Glycine max] gi|356540042|ref|XP_003538500.1| 2
Uroporphyrinogen decarboxylase [Medicago truncatula] gi|357461511|ref|XP_003601037.1| 2
Protoporphyrinogen IX oxidase [Glycine max] gi|351726950|ref|NP_001236376.1| 3
Protoporphyrinogen IX oxidase [Glycine max] gi|351726950|ref|NP_001236376.1| 3
Coproporphyrinogen III oxidase [Ziziphus jujuba] gi|197725645|gb|ACH73029.1| 3
PREDICTED: coproporphyrinogen-III oxidase, chloroplastic-like [Cicer arietinum] gi|502100078|ref|XP_004491630.1| 3
PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic-like [Glycine max] gi|356544092|ref|XP_003540489.1| 2
Oxygen-dependent coproporphyrinogen-III oxidase; TAIR: AT1G03475.1 Coproporphyrinogen III oxidase; Swiss-Prot: sp|P35055|HEM6_SOYBN Oxygen-dependent coproporphyrinogen-III oxidase, chloroplastic; TrEMBL-Plants: tr|A0A0L9UU22|A0A0L9UU22_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0003900 3
Oxygen-independent coproporphyrinogen III oxidase, putative; TAIR: AT5G63290.1 Radical SAM superfamily protein; Swiss-Prot: sp|P73245|Y1917_SYNY3 Oxygen-independent coproporphyrinogen-III oxidase-like protein sll1917; TrEMBL-Plants: tr|V7AWC4|V7AWC4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0234800 4
Uroporphyrinogen decarboxylase; TAIR: AT3G14930.1 Uroporphyrinogen decarboxylase; Swiss-Prot: sp|Q93ZB6|DCUP1_ARATH Uroporphyrinogen decarboxylase 1, chloroplastic; TrEMBL-Plants: tr|I3SP94|I3SP94_LOTJA Uroporphyrinogen decarboxylase; Found in the gene: LotjaGi2g1v0305200 2
Uroporphyrinogen decarboxylase; TAIR: AT3G14930.1 Uroporphyrinogen decarboxylase; Swiss-Prot: sp|Q93ZB6|DCUP1_ARATH Uroporphyrinogen decarboxylase 1, chloroplastic; TrEMBL-Plants: tr|I3SP94|I3SP94_LOTJA Uroporphyrinogen decarboxylase; Found in the gene: LotjaGi2g1v0305200 2
Uroporphyrinogen decarboxylase; TAIR: AT3G14930.1 Uroporphyrinogen decarboxylase; Swiss-Prot: sp|Q93ZB6|DCUP1_ARATH Uroporphyrinogen decarboxylase 1, chloroplastic; TrEMBL-Plants: tr|I3SP94|I3SP94_LOTJA Uroporphyrinogen decarboxylase; Found in the gene: LotjaGi2g1v0305200 2
Oxygen-dependent coproporphyrinogen-III oxidase; TAIR: AT1G03475.1 Coproporphyrinogen III oxidase; Swiss-Prot: sp|P35055|HEM6_SOYBN Oxygen-dependent coproporphyrinogen-III oxidase, chloroplastic; TrEMBL-Plants: tr|I3SZR7|I3SZR7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0025400 3
Uroporphyrinogen decarboxylase; TAIR: AT3G14930.1 Uroporphyrinogen decarboxylase; Swiss-Prot: sp|Q93ZB6|DCUP1_ARATH Uroporphyrinogen decarboxylase 1, chloroplastic; TrEMBL-Plants: tr|I3SP94|I3SP94_LOTJA Uroporphyrinogen decarboxylase; Found in the gene: LotjaGi5g1v0022300 2
Uroporphyrinogen decarboxylase; TAIR: AT3G14930.1 Uroporphyrinogen decarboxylase; Swiss-Prot: sp|Q93ZB6|DCUP1_ARATH Uroporphyrinogen decarboxylase 1, chloroplastic; TrEMBL-Plants: tr|I3SP94|I3SP94_LOTJA Uroporphyrinogen decarboxylase; Found in the gene: LotjaGi5g1v0022300 2
Uroporphyrinogen decarboxylase; TAIR: AT3G14930.1 Uroporphyrinogen decarboxylase; Swiss-Prot: sp|Q93ZB6|DCUP1_ARATH Uroporphyrinogen decarboxylase 1, chloroplastic; TrEMBL-Plants: tr|I3SP94|I3SP94_LOTJA Uroporphyrinogen decarboxylase; Found in the gene: LotjaGi5g1v0022300 2
Uroporphyrinogen decarboxylase; TAIR: AT3G14930.1 Uroporphyrinogen decarboxylase; Swiss-Prot: sp|Q93ZB6|DCUP1_ARATH Uroporphyrinogen decarboxylase 1, chloroplastic; TrEMBL-Plants: tr|I3SP94|I3SP94_LOTJA Uroporphyrinogen decarboxylase; Found in the gene: LotjaGi5g1v0022300 2
Protoporphyrinogen oxidase; TAIR: AT4G01690.1 Flavin containing amine oxidoreductase family; Swiss-Prot: sp|P55826|PPOC_ARATH Protoporphyrinogen oxidase 1, chloroplastic; TrEMBL-Plants: tr|A0A151SSA5|A0A151SSA5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0237400 3
Uroporphyrinogen decarboxylase; TAIR: AT2G40490.1 Uroporphyrinogen decarboxylase; Swiss-Prot: sp|Q42967|DCUP_TOBAC Uroporphyrinogen decarboxylase, chloroplastic; TrEMBL-Plants: tr|I3TAG7|I3TAG7_LOTJA Uroporphyrinogen decarboxylase; Found in the gene: LotjaGi6g1v0083500 2
Uroporphyrinogen decarboxylase; TAIR: AT2G40490.1 Uroporphyrinogen decarboxylase; Swiss-Prot: sp|Q42967|DCUP_TOBAC Uroporphyrinogen decarboxylase, chloroplastic; TrEMBL-Plants: tr|I3TAG7|I3TAG7_LOTJA Uroporphyrinogen decarboxylase; Found in the gene: LotjaGi6g1v0083500 2

Co-occuring GO terms 1

A list of co-occurring GO terms within the L. japonicus gene space:

GO term Namespace Name Observations Saturation (%)
Biological process Porphyrin-containing compound biosynthetic process 1 3.85