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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR038071
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 23 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.985s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi1g1v0646100.1
n.a. 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; TAIR: AT5G17920.1 Cobalamin-independent synthase family protein; Swiss-Prot: sp|P93263|METE_MESCR 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; TrEMBL-Plants: tr|Q71EW8|Q71EW8_SOYBN Methionine synthase; Found in the gene: LotjaGi1g1v0646100 LjG1.1_chr1 120323982 120329107 -
3 domain predictions
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LotjaGi1g1v0646100.2
n.a. 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; TAIR: AT5G17920.1 Cobalamin-independent synthase family protein; Swiss-Prot: sp|P93263|METE_MESCR 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; TrEMBL-Plants: tr|Q71EW8|Q71EW8_SOYBN Methionine synthase; Found in the gene: LotjaGi1g1v0646100 LjG1.1_chr1 120324657 120328576 -
3 domain predictions
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LotjaGi1g1v0646100.3
n.a. 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; TAIR: AT5G17920.1 Cobalamin-independent synthase family protein; Swiss-Prot: sp|P93263|METE_MESCR 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; TrEMBL-Plants: tr|Q71EW8|Q71EW8_SOYBN Methionine synthase; Found in the gene: LotjaGi1g1v0646100 LjG1.1_chr1 120324667 120328699 -
3 domain predictions
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LotjaGi1g1v0646100.4
n.a. 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; TAIR: AT5G17920.1 Cobalamin-independent synthase family protein; Swiss-Prot: sp|P93263|METE_MESCR 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; TrEMBL-Plants: tr|Q71EW8|Q71EW8_SOYBN Methionine synthase; Found in the gene: LotjaGi1g1v0646100 LjG1.1_chr1 120324667 120328875 -
3 domain predictions
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LotjaGi1g1v0646100.5
n.a. 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; TAIR: AT5G17920.1 Cobalamin-independent synthase family protein; Swiss-Prot: sp|P93263|METE_MESCR 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; TrEMBL-Plants: tr|Q71EW8|Q71EW8_SOYBN Methionine synthase; Found in the gene: LotjaGi1g1v0646100 LjG1.1_chr1 120324667 120328881 -
3 domain predictions
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LotjaGi2g1v0109800.1
n.a. 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; TAIR: AT5G17920.1 Cobalamin-independent synthase family protein; Swiss-Prot: sp|O50008|METE1_ARATH 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 1; TrEMBL-Plants: tr|A0A151RFH6|A0A151RFH6_CAJCA 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Found in the gene: LotjaGi2g1v0109800 LjG1.1_chr2 38446649 38454627 -
3 domain predictions
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LotjaGi2g1v0109800.2
n.a. 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; TAIR: AT5G17920.1 Cobalamin-independent synthase family protein; Swiss-Prot: sp|O50008|METE1_ARATH 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 1; TrEMBL-Plants: tr|A0A151RFH6|A0A151RFH6_CAJCA 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Found in the gene: LotjaGi2g1v0109800 LjG1.1_chr2 38446710 38454748 -
3 domain predictions
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LotjaGi2g1v0109800.3
n.a. 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; TAIR: AT5G17920.1 Cobalamin-independent synthase family protein; Swiss-Prot: sp|O50008|METE1_ARATH 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 1; TrEMBL-Plants: tr|A0A151RFH6|A0A151RFH6_CAJCA 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Found in the gene: LotjaGi2g1v0109800 LjG1.1_chr2 38447466 38452647 -
3 domain predictions
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LotjaGi2g1v0109800.4
n.a. 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; TAIR: AT5G17920.1 Cobalamin-independent synthase family protein; Swiss-Prot: sp|O50008|METE1_ARATH 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 1; TrEMBL-Plants: tr|A0A151RFH6|A0A151RFH6_CAJCA 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Found in the gene: LotjaGi2g1v0109800 LjG1.1_chr2 38447466 38452830 -
3 domain predictions
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LotjaGi2g1v0305200.1
n.a. Uroporphyrinogen decarboxylase; TAIR: AT3G14930.1 Uroporphyrinogen decarboxylase; Swiss-Prot: sp|Q93ZB6|DCUP1_ARATH Uroporphyrinogen decarboxylase 1, chloroplastic; TrEMBL-Plants: tr|I3SP94|I3SP94_LOTJA Uroporphyrinogen decarboxylase; Found in the gene: LotjaGi2g1v0305200 LjG1.1_chr2 77853737 77858298 -
3 domain predictions
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LotjaGi2g1v0305200.2
n.a. Uroporphyrinogen decarboxylase; TAIR: AT3G14930.1 Uroporphyrinogen decarboxylase; Swiss-Prot: sp|Q93ZB6|DCUP1_ARATH Uroporphyrinogen decarboxylase 1, chloroplastic; TrEMBL-Plants: tr|I3SP94|I3SP94_LOTJA Uroporphyrinogen decarboxylase; Found in the gene: LotjaGi2g1v0305200 LjG1.1_chr2 77854224 77857136 -
3 domain predictions
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LotjaGi2g1v0305200.3
n.a. Uroporphyrinogen decarboxylase; TAIR: AT3G14930.1 Uroporphyrinogen decarboxylase; Swiss-Prot: sp|Q93ZB6|DCUP1_ARATH Uroporphyrinogen decarboxylase 1, chloroplastic; TrEMBL-Plants: tr|I3SP94|I3SP94_LOTJA Uroporphyrinogen decarboxylase; Found in the gene: LotjaGi2g1v0305200 LjG1.1_chr2 77854224 77857146 -
3 domain predictions
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LotjaGi5g1v0022300.1
n.a. Uroporphyrinogen decarboxylase; TAIR: AT3G14930.1 Uroporphyrinogen decarboxylase; Swiss-Prot: sp|Q93ZB6|DCUP1_ARATH Uroporphyrinogen decarboxylase 1, chloroplastic; TrEMBL-Plants: tr|I3SP94|I3SP94_LOTJA Uroporphyrinogen decarboxylase; Found in the gene: LotjaGi5g1v0022300 LjG1.1_chr5 3989171 3995265 -
3 domain predictions
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LotjaGi5g1v0022300.2
n.a. Uroporphyrinogen decarboxylase; TAIR: AT3G14930.1 Uroporphyrinogen decarboxylase; Swiss-Prot: sp|Q93ZB6|DCUP1_ARATH Uroporphyrinogen decarboxylase 1, chloroplastic; TrEMBL-Plants: tr|I3SP94|I3SP94_LOTJA Uroporphyrinogen decarboxylase; Found in the gene: LotjaGi5g1v0022300 LjG1.1_chr5 3990619 3995016 -
3 domain predictions
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LotjaGi5g1v0022300.3
n.a. Uroporphyrinogen decarboxylase; TAIR: AT3G14930.1 Uroporphyrinogen decarboxylase; Swiss-Prot: sp|Q93ZB6|DCUP1_ARATH Uroporphyrinogen decarboxylase 1, chloroplastic; TrEMBL-Plants: tr|I3SP94|I3SP94_LOTJA Uroporphyrinogen decarboxylase; Found in the gene: LotjaGi5g1v0022300 LjG1.1_chr5 3991270 3994330 -
3 domain predictions
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LotjaGi5g1v0022300.4
n.a. Uroporphyrinogen decarboxylase; TAIR: AT3G14930.1 Uroporphyrinogen decarboxylase; Swiss-Prot: sp|Q93ZB6|DCUP1_ARATH Uroporphyrinogen decarboxylase 1, chloroplastic; TrEMBL-Plants: tr|I3SP94|I3SP94_LOTJA Uroporphyrinogen decarboxylase; Found in the gene: LotjaGi5g1v0022300 LjG1.1_chr5 3991270 3994330 -
3 domain predictions
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LotjaGi5g1v0184900_LC.1
n.a. 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; TAIR: AT3G03780.1 methionine synthase 2; Swiss-Prot: sp|P93263|METE_MESCR 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; TrEMBL-Plants: tr|I1LXY1|I1LXY1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0184900_LC LjG1.1_chr5 47107704 47115013 -
3 domain predictions
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LotjaGi6g1v0083500.1
n.a. Uroporphyrinogen decarboxylase; TAIR: AT2G40490.1 Uroporphyrinogen decarboxylase; Swiss-Prot: sp|Q42967|DCUP_TOBAC Uroporphyrinogen decarboxylase, chloroplastic; TrEMBL-Plants: tr|I3TAG7|I3TAG7_LOTJA Uroporphyrinogen decarboxylase; Found in the gene: LotjaGi6g1v0083500 LjG1.1_chr6 16373563 16377555 -
3 domain predictions
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LotjaGi6g1v0083500.2
n.a. Uroporphyrinogen decarboxylase; TAIR: AT2G40490.1 Uroporphyrinogen decarboxylase; Swiss-Prot: sp|Q42967|DCUP_TOBAC Uroporphyrinogen decarboxylase, chloroplastic; TrEMBL-Plants: tr|I3TAG7|I3TAG7_LOTJA Uroporphyrinogen decarboxylase; Found in the gene: LotjaGi6g1v0083500 LjG1.1_chr6 16373936 16376884 -
3 domain predictions
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LotjaGi6g1v0193300.1
n.a. 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; TAIR: AT5G17920.1 Cobalamin-independent synthase family protein; Swiss-Prot: sp|Q42699|METE_CATRO 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; TrEMBL-Plants: tr|I1LXY1|I1LXY1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0193300 LjG1.1_chr6 48965281 48970357 -
3 domain predictions
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LotjaGi6g1v0193300.2
n.a. 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; TAIR: AT5G17920.1 Cobalamin-independent synthase family protein; Swiss-Prot: sp|Q42699|METE_CATRO 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; TrEMBL-Plants: tr|I1LXY1|I1LXY1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0193300 LjG1.1_chr6 48965764 48969477 -
3 domain predictions
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LotjaGi6g1v0193300.3
n.a. 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; TAIR: AT5G17920.1 Cobalamin-independent synthase family protein; Swiss-Prot: sp|Q42699|METE_CATRO 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; TrEMBL-Plants: tr|I1LXY1|I1LXY1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0193300 LjG1.1_chr6 48965764 48969662 -
3 domain predictions
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LotjaGi6g1v0193300.4
n.a. 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; TAIR: AT5G17920.1 Cobalamin-independent synthase family protein; Swiss-Prot: sp|Q42699|METE_CATRO 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; TrEMBL-Plants: tr|I1LXY1|I1LXY1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0193300 LjG1.1_chr6 48965764 48969674 -
3 domain predictions
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