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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0039400 |
| Transcript ID | LotjaGi5g1v0039400.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pseudouridine synthase family protein; TAIR: AT1G78910.2 Pseudouridine synthase family protein; Swiss-Prot: sp|Q5XET6|PUS3_ARATH RNA pseudouridine synthase 3, mitochondrial; TrEMBL-Plants: tr|A0A151T0N6|A0A151T0N6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0039400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:6656905..6663987) extracted from Lotus japonicus Gifu genome v1.2.
GAAAAAAAAATCCCCAAATTCAGAATAGGAACCCTAATTTCCCCCGGCCAATATCTCTCAAGTCTCACCTTCCCATAGCT GCTGCCCAAACCACCTCCGACCACCGCTCCGCCCATTCCCGACCACCGGCGACCACTCCGGTCTCCGGCCACCGTGTTTC TGGTAATGGACTAGTGTTGTTTATCTTTGTTGGGGACAGATGCTGAATCACGTGAGCAGAAACAATAGCTGGTCATGGCT ATCATCAGCAGTGAGGCACTACTCTAGAATTCAGCCCCCAAGGCCTGTTTGTGTTGAACCAGTAATCAGAGTATCTAACA ACATTGCCCGCTTGGATGTGCCCAAAGAAGGCCCAAAACCCAGACAGATACTATCATTGCCTCCTTTTCCTGGTCACCCC TTGCCTGGTGCTTCTGGGCAGCAGCGTGATCATGTCACAGCAGTCAATTGGATTAAGTATTACTTCAAGGGCACATGGGG TTCCGTTATCGAGTCTCATTTTAGGAAGGGGCTTGTAAGTATCCACTATTTAAATTTGCCAATGAGCTTGTAATCATAGT TATCTTGTTCTTTTTGATACATACTTTATGATATTAAGTAGATAAATTCTTGTCAAGATGAATATTGCATGATTCAATCT TGTTGATTGATATTGGGTTGGTATTGCTTATAAGTAAGATTATATCTATAATCCATTGATTTGATAGATAGGTACCTTTT TTTCTATTGCGGAGGATAAATAACCTACTTAACTCAGCGGTTAGAGTATCGCTTTAAAGTAAAAAAAAAAAACGGAATAA AACTGAAATAGAAGAGTGGTTAAATATAGAAAATTGTAGAGTAAACAGCCATTTTGGTCCCTGAATGTGTTCACTTATGA CGGACTGGTCCTTATATTTTGGAAATGGTTGTTTTTCATCCCTGAATGTGTTGCCGTCGGTCAAGTTCATCCTTGGTTGA GTTTTCCGTTAGTCCCTGAGACGGAAAAGTCCAAGTGTCACAATTTTTGCCACTTTGGCTTGACAACTCAGATCTTGTTA TGTCACTTTAGTCAATTTAGTCCCCCTAAGAAAAAACAAAAACTCTGAGTTCATAAAAAATAAATATAAAAAAAGAAACT CAACATATCCATCATGTTCATCAATCTTCATCTTCTTCATCATCTTACCCAGAAAAAAGAAAACATATTCATATCCCAAA CATCATCTTTTTCATGTTAATCTCTTTTCCAAACAAAACCCCAAATCTTAAAAAAACCCAACTGGTCAAGATACATGTGC AACAAACAAAGGTTTTAATTGCAGTGCTGACAACATGAGATCGAACCAGTAAACCCGCCTGCCCCATTTGATCACTACCA ATTTCTAAGCAAATTGAGAAATGTAATAATGACTGAAAGAAAACAACATACTGAGATAAAACAACATGCTGAATTCAATT ACAGTAGTAACGACACTTGTTGATCAAAGAGGATCCATTAGACCATAAGAACAATAGAGTAGTCACTAGTCAGTGCAAGT ATCACTAGGTGGCAGATCAAAGTGAGGAGGTGGTATTCAAGCAATTCAAACAAATTAATATGAAAAACACAGGAAGAATA AGCACACAAGGTGAACAACACAGGAATGCAGAAAATAATTGAAACCGAAAAAGGACTCAAAAACCAAAGACCCATTTTGA AGTTAAAATTATGGAAATGAAGAATAAGAAACGATAGAGCAAGAAATGGAACAGAAAATTAGGGGAACAGAAAACCAGTA CCTATGCACTTCCCAATCGATTTCCTCAACAAGCGTGGAATCAACAACAACCACCACCAAACACTCCTCAAAACCCCAAT TTTCAACAACACATTCCTCAAAACCCCAATTTTCCATCACCCATTTCTCAAAACCCCAACTTCCAACGACCCAGTTCTCA AAACCCAACTTTCAGCCACCCCCGAGTCCCAATCGATGGAACAATCAAAACCAGTGGAACCCTCGGACTCAGGGGTTCCT AATCCGCAAAATGGAAACCCTAACCAAGCTCCGGTTCAAGTGCAAGCTCCTATTTGATTTGTATGGCCAAACGAAAGAAG AAAGAAGCATGGTGATAGTGGTGGTACTTCATAGAGGAAGAAAAAAGCATGGTGATGGTGTGGTGAAGATGATGAAGAGG AGGAAGATAAAGAAGATGAAGAAGAGGAAGAAGAAGCATAAGTGAGGGACGAGTTTGACCGTGTTTTTAGGAGGAAAAAA GAAAATGTGCCAAGTAGGATGCTAGCATGGAAAAAAATGTGCCAGTTGGACTTTTCCGTCTCAGGGACTAACGGAAAACT CAACCAAGGATGAACTTGACCGACGGCAACACATTCAGGGATGAAAAACAACCATTTCCAAAATATAAGGACCAGTCCGT CATAAGTGAACACATTCAAGGACCAAAATGGCTGTTTACTCGAAAATTGTAGTATAGGTTGAACTTATTCGATACCAGAA TCAATGGTATCGAATAAGTTCAACCTATACCTTAACGCGCCTTCGCCTAGCGTAGAGGACCCTTGCCGCGACAGGCGAAA TCCTGCTATTCGCGGCCTTCCCTTTATGGGATTTTATTTTTGGGAGTCATTCGCGACAGGCCGCGATTCGCGATTGACTA CTATGCTTGTAATTCAATTAAACTAAATTAAACATTTGTGGTTCGCAACTTGCTTTTCATATTAAATTATGCTTTAATTT TAACCTTTAACATTAGGGTGGTTGTTTCCAAAATATTAGTTAATATAGTTCCTTTTACATATCTTGTGGTGTCCTGAAAG TACATAGAAGAATTGATTTAGGAAGGAAGTGCATGTCTGATATAGATGATGGTCTACTTAGTTTGCAAGTTGGAAGACAA TAGTAGGATCTACATTTTCCGTGTCACATAAGATTTATATCATTTTAAAGGGTCAGATATGAATGTGGTGATTGAAAAAT GTACTTACAGACTGTTGATAATTTCTTATTTTAGGTGCAAATGGAGGACCTGATTGCTGCCGACTCTTTCACTCAGAAGG ATGAGCGGATGAAACCTATGCGAAAGGTATTTCATGTTTACATGTACCATTTTATTGGACCAGTTTCTATTACAAGCTGT GCTTTGGATGCGTTACTATTCGTCTTTGTGTTTTTCTTCTTCTTAAGAAAAAGTGAATTACTTATAATATGTTTTAGGTG TAATAATACTACAACTATGCAGCTTAACTGCAGATGAGACCTAATGACGTAATGAAGCCTGGAGCCAGACTTCACGTCCC TGTATCAATGGCTGAGACTAGGATTTCGAAAAGATATGATGCAATACCAAGTGGAACACTGTATCCAAATGCTGATGAAA TTAAGTATCTGCAAAGGCTTGTGATATACAAGGCATGCCTTTCTTCTAAAGCTATATTTATTTTATTTTCTAGTTTGCTG TTACTTATTTTTCAGATGCACTGCAATATATTTATTTATTGCATATTGTGTTAAAATGTATTGCTTTCAGGACTCTGCTA TTATTGTGCTGAATAAACCTCCAAAATTGCCTGTCAAGGTTTGAATGCCTATTCTTTCACATTTACACAAATTCACTTTG AGTTTGAGTTTGTTCTGGGATTTGATTTCCTGCCTGTTGTCTTGTAGGGTAATCTTCCAGTTCATAATAGCATGGATGCA TTGGCTGCTGCAGCACTGTCCTATGATTATGATGAGGGTCCTAAACTGGTAAACTACTCTTATACATCATTACAATGAAA TAATTTGGTTTATACATAAAAGTAAATGAATCATCATCATGCAGCAAACAGATATATCTGTTTATTTAGATAGGCGGGCC CCACTTTTTTTACAAAATCTTAAAAGATTAAAATAATTGGTCACTCTGAAGGTTTTGGTCAGTTTCATTGCTTCTTGTCC TGGTCTCTCGTCAGACGAAAGACCTTGAGGTCTGTACATTCTAATATCTTGTAGGAATCTGGATGGCTTACCTTTCCTGA CAATTGAATCATCTGTTAAGATTTTTTCTCTCAATGTTTTGCTTTAATTATCCTTACATACCATAAGATTTGTCTAAGAG CATGGAGATAGGTAAAGCAATTAGGCTATATAATATTCCCATTGAAGTTTGGAAGTGCCTCAGAGAGAATGGTATAACCT GGCTCTTAAATTTGTTCATTGAGATAATCAGATCTAAAATGATGGGTGGAGAAGCACTTTGATTATCATTTATAAGAACA AGGAAGATACCATAAGTTGTTGAAACATAGGGCTTAAGCTCATTACTCATCTCTAAACTAGAACTGTTGATATTAACAAA ATGAACCTGTCTGAAACCTTTTTGTTAGAGGGTTTCTTTAATCATGGTCTGTTTTCATAATAAATACCAAAAAATGCTAT TTTGTTTTCATTTTTTTTTCACTCTCTTCTGATGTTCTCTATCCTAATTTCATTTGTGAATCGGAAGCTGTTATAGAAAT GGTTGATGCTTATTGATCATACATGACAGCTTAATTCATTTGCTGGATTTTCCAGGTTCACCGTCTTGACAAAGAGAGTA GTGGCATCCTATTATTTGGGAGAACAAAAGATAGCGTATCTCATCTTCAATGGTTATTCAGTAACATTAACAGCGCAAAA TCTTCTTGTAAGGTGCCTTATCTGCATGAAGTAGTGAACTTCTATTTTCTGTAAATAGTGTTTTACTTGGTGAAACACAT ACAGTCTTTTAAAACACTCAACCAAAAGTTTTGTATTTCACTGTTGACTTACATTCATTGGGCTACTTTAGGCTTGGAAT GATGCATGTGAAGCTACATATCAGAGGTATTGGGCATTGGTCATAGGGACTCCCAATGAGAAGGAAGGCATAATTCACGC TCCTCTTTCTAAGGTTTTCATTCTTTCTCATTTTAGTTTCATCTCTGTGCGTACATCCAGTGATAACTGATAACAAGTCT AATTTGATTGCTATCTTCTAGTGTGTTAATTGATTATGTTTGCATGCCGTCTTATTTCAGGTACTTCTGAATGATGGGAA GACTGAGAGGGTCATGCTAGCTCATCATTCAACTATAGAACCTCGCCAAGAGGCTGTGACTGAGTATCGAGTGCTTGGTC CAAAGATAAATGGGTGCTCATGGGTTGAGCTGCGTCCACTTACTTCCCGGAAGCATCAGGTATCTTGGATGCTGCTTTTA TTCTACATTCAACTGAAATGTGTTGGTAAAAAGAGAGTAGACATAATTTATCTTTTTATATCTTTTGAAGTCTAATTAGG ATCTTCTTTTTTAATTATTGTAGAATATCTTTAGAATATGTTGGGTAATCTAATCAGAATTTGGGTTAGGCATAACTCTA CACCAAAAGCTTGCTCTACCCTTTATACGGGTTGTCTCCAATTAATGGATTTAGTATAGGCTCTGATATCATATTAGAAT TTGCATTACGCCTAACTCTACTCCAAAAACTAGCTTAGAAGTGAGGGTTGTTCTACCCTATATGAACACTTATTTGACCA TATCTCATTATCTCTAGTGAATGTGAGACTTATCAATAAATCCCTGACAGGGGGTGGCTGACTGGGTTGACCTTCCGCAC CTACAAAGCTAGAACTTGGCTTTGATTATAGGAAACCCGTTGGTAGCTAAAATAAATACAATCTCACTCTAAAATCTCAT TGAGGTTGAGTGCCTTCCATGTGGCCTTAACCTTGCCTGAGGACAAGACTTACCCTTATCTAAACTTTAATCCACGTAGA AAATGGAATATGTTGACTTGTTGAGTAATTATTTAGCTATTGTTAAGGTCCCACGTTGACTAGACATATGTACAAAATAG TCTTTATATAGGATAGAACCTTCACTCCTAAGTTGGTTTTTGGAATAGAGTTAGCCTAATCCAAATTTTAAGTTGGCATC AGAGCCTTTCATAGGTCGTTTATATAATATATTACTGTTCTCGACCTTTTTTTCTCTTTCCCATTTCATCCGCAACCTAT AATTCTTATCATTAACAATATCTAAAAGATGCCTCCTGTATCCTTTTCTTGCTGTCTTTCATTGAAGATGAACTGATTCC AGTTCCTACTGTCTGATAAAATAATGAAATCGTCATCTGATTGCTTTGATATAATTGTAGTTTTGCTGAGTAAAAGCAAC TTACTTATTCCTTGCTTCATGTGATTTCTGCTCCCCTTTTCCAGTTGCGTGTCCATTGTGCTGAAGCACTCGGCACACCA ATAGTAGGTGACTATAAGTATGGCTGGTTTGTGCATAACCGATGGAAACAAATGCCGAGAGTCGATATTGAGCCAACAAC TGGAAAACCATACAGGATGAGGAGGCCAGAAGGCCTAGAAGTTCAGAAGGGAAGCGTTTTGTCCAAGGTCCCTCTACTGC ATCTTCACTGCAGAGAACTTGCGCTCCCCAACATTTCTAAGTTTCTGCATGTTTTTGAAAAGAGCCCTGAAGAACTGCAC CCTTCACTTAGGGAGCAGCCTGATGTTCTTCGCTTTGTTGCAACAATGCCTTCACATATGAGGATTAGTTGGAATCTTAT GTCTTCGTATTTAGTTTGAGAAAAAGTGCAATATTGAATTGGTTGATTAACTATGGGAAAAGAAATAGATGTCATTAAGT TTAGGGAGGTCTGTTATTTTTTGGCATTTAAGATTTCCATTACTACAGCATAAGAGGTTTAGGTCTAATTAAATTTTAGT ATTGGCATATGATTGAAAAAATCAAGAACCTGTTTCCTTTGTATTCTCATTTTCTATCCCGCTAATTAAAATAATTAACA TTTCAGTTACCTTAGGAAAGTTTTTTTTGGAAGCACTAGCAAAGTTATTATTTGAGAGATTTATGTTTTTCATAATGTAT TGTTTTTAAGCTGGAAGGATAGAGAAACGAGACGTACAATTAAATTCATGATGGAAACTGGTTGTCAAAATTCTCGCCTT CAAATATGGATTGAGGATATCTGCTTAGAAATTTCCTTTATACACAATGTATTTATTTGTTCATATAATAGTATTAATGG TGGCATACCACGTCTAGTAAAGGTTATGAATCAAATAAGCCAA
CDS sequence (LotjaGi5g1v0039400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATTGCTTTCAGGACTCTGCTATTATTGTGCTGAATAAACCTCCAAAATTGCCTGTCAAGGGTAATCTTCCAGTTCA TAATAGCATGGATGCATTGGCTGCTGCAGCACTGTCCTATGATTATGATGAGGGTCCTAAACTGGTTCACCGTCTTGACA AAGAGAGTAGTGGCATCCTATTATTTGGGAGAACAAAAGATAGCGTATCTCATCTTCAATGGTTATTCAGTAACATTAAC AGCGCAAAATCTTCTTGTAAGGCTTGGAATGATGCATGTGAAGCTACATATCAGAGGTATTGGGCATTGGTCATAGGGAC TCCCAATGAGAAGGAAGGCATAATTCACGCTCCTCTTTCTAAGGTACTTCTGAATGATGGGAAGACTGAGAGGGTCATGC TAGCTCATCATTCAACTATAGAACCTCGCCAAGAGGCTGTGACTGAGTATCGAGTGCTTGGTCCAAAGATAAATGGGTGC TCATGGGTTGAGCTGCGTCCACTTACTTCCCGGAAGCATCAGTTGCGTGTCCATTGTGCTGAAGCACTCGGCACACCAAT AGTAGGTGACTATAAGTATGGCTGGTTTGTGCATAACCGATGGAAACAAATGCCGAGAGTCGATATTGAGCCAACAACTG GAAAACCATACAGGATGAGGAGGCCAGAAGGCCTAGAAGTTCAGAAGGGAAGCGTTTTGTCCAAGGTCCCTCTACTGCAT CTTCACTGCAGAGAACTTGCGCTCCCCAACATTTCTAAGTTTCTGCATGTTTTTGAAAAGAGCCCTGAAGAACTGCACCC TTCACTTAGGGAGCAGCCTGATGTTCTTCGCTTTGTTGCAACAATGCCTTCACATATGAGGATTAGTTGGAATCTTATGT CTTCGTATTTAGTTTGA
Protein sequence (LotjaGi5g1v0039400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYCFQDSAIIVLNKPPKLPVKGNLPVHNSMDALAAAALSYDYDEGPKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNIN SAKSSCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGC SWVELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVHNRWKQMPRVDIEPTTGKPYRMRRPEGLEVQKGSVLSKVPLLH LHCRELALPNISKFLHVFEKSPEELHPSLREQPDVLRFVATMPSHMRISWNLMSSYLV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 259 | 258 | 2.9E-47 | – | |
| PANTHER | 3 | 298 | 296 | 2.1E-171 | – | |
| PANTHER | 3 | 298 | 296 | 2.1E-171 | – | |
| SUPERFAMILY | 3 | 256 | 254 | 4.73E-41 | ||
| CDD | 9 | 205 | 197 | 2.2941E-48 | ||
| Pfam | 9 | 180 | 172 | 1.0E-24 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Pseudouridine synthesis | The intramolecular conversion of uridine to pseudouridine within an RNA molecule. This posttranscriptional base modification occurs in tRNA, rRNA, and snRNAs. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Biological process | RNA modification | The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically. | ||
| Molecular function | Pseudouridine synthase activity | Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5. |
Expression pattern of LotjaGi5g1v0039400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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