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GO:0009982

View this GO term in other databases

Overview

Field Value
Namespace Molecular function
Short description Pseudouridine synthase activity
Full defintion Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5.
Subterm of

Relationships

The relationship of GO:0009982 with other GO terms.

Relationship type GO terms
Is a
Regulates n.a.
Part of n.a.
Positively regulates n.a.
Negatively regulates n.a.

Ancestor tree

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Additional data

This table contains additional metadata associated with the GO entry's definition field.

Field Value
GOCmah

Associated Lotus transcripts 65

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Transcript Name Description GO terms GO count
Lj0g3v0071639.1
– Pseudouridine synthase family protein [Arabidopsis thaliana] gi|186522847|ref|NP_196950.2|
GO terms
4
Lj0g3v0071639.2
– Pseudouridine synthase family protein [Arabidopsis thaliana] gi|186522847|ref|NP_196950.2|
GO terms
4
Lj0g3v0169599.1
– PREDICTED: RNA pseudourine synthase 7-like [Cicer arietinum] gi|502133332|ref|XP_004501725.1|
GO terms
4
Lj0g3v0223199.1
– PREDICTED: RNA pseudourine synthase 6, chloroplastic-like [Glycine max] gi|356546416|ref|XP_003541622.1|
GO terms
4
Lj0g3v0223199.3
– PREDICTED: RNA pseudourine synthase 6, chloroplastic-like [Glycine max] gi|356546416|ref|XP_003541622.1|
GO terms
4
Lj0g3v0246539.1
– Pseudouridylate synthase [Medicago truncatula] gi|357491363|ref|XP_003615969.1|
GO terms
4
Lj0g3v0292429.1
–
GO terms
4
Lj0g3v0302959.1
– PREDICTED: tRNA pseudouridine synthase A-like isoform X2 [Cicer arietinum] gi|502076774|ref|XP_004485454.1|
GO terms
4
Lj0g3v0302969.1
– PREDICTED: tRNA pseudouridine synthase A-like [Glycine max] gi|356543399|ref|XP_003540148.1|
GO terms
4
Lj0g3v0316659.1
– PREDICTED: RNA pseudourine synthase 3, mitochondrial-like isoform X1 [Cicer arietinum] gi|502172693|ref|XP_004515176.1|
GO terms
4
Lj0g3v0316659.2
– PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Glycine max] gi|356562211|ref|XP_003549365.1|
GO terms
4
Lj0g3v0316659.3
– PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Glycine max] gi|356562211|ref|XP_003549365.1|
GO terms
4
Lj0g3v0343009.1
– TRNA pseudouridine synthase [Medicago truncatula] gi|357480149|ref|XP_003610360.1|
GO terms
4
Lj1g3v0037710.1
– PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Glycine max] gi|356495831|ref|XP_003516775.1|
GO terms
4
Lj1g3v0047810.1
– PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Glycine max] gi|356495831|ref|XP_003516775.1|
GO terms
4
Lj1g3v2251580.1
– PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Cicer arietinum] gi|502131232|ref|XP_004500918.1|
GO terms
4
Lj2g3v2379070.1
– Pseudouridylate synthase [Medicago truncatula] gi|357491363|ref|XP_003615969.1|
GO terms
4
Lj2g3v2410320.1
– Pseudouridylate synthase [Medicago truncatula] gi|357491367|ref|XP_003615971.1|
GO terms
4
Lj2g3v2410320.2
– Pseudouridylate synthase [Medicago truncatula] gi|357491367|ref|XP_003615971.1|
GO terms
4
Lj3g3v2214670.1
– PREDICTED: multisubstrate pseudouridine synthase 7-like isoform X2 [Cicer arietinum] gi|502113547|ref|XP_004494685.1|
GO terms
4
Lj4g3v2238990.1
– PREDICTED: tRNA pseudouridine synthase A 1-like [Glycine max] gi|356564676|ref|XP_003550576.1|
GO terms
4
Lj4g3v3014900.1
– PREDICTED: tRNA pseudouridine synthase A-like [Glycine max] gi|356527708|ref|XP_003532450.1|
GO terms
4
Lj5g3v0266900.1
– Pseudouridine synthase family protein [Arabidopsis thaliana] gi|30686818|ref|NP_173466.2|
GO terms
4
Lj5g3v1795760.1
– Pseudouridine synthase family protein isoform 2, partial [Theobroma cacao] gi|508726877|gb|EOY18774.1|
GO terms
4
Lj5g3v1795760.2
– Pseudouridine synthase family protein isoform 3 [Theobroma cacao] gi|508726878|gb|EOY18775.1|
GO terms
4
Lj5g3v1839410.1
– PREDICTED: RNA pseudourine synthase 5-like [Glycine max] gi|356576201|ref|XP_003556222.1|
GO terms
4
Lj5g3v1839410.3
– PREDICTED: RNA pseudourine synthase 5-like [Cicer arietinum] gi|502118549|ref|XP_004496322.1|
GO terms
4
Lj5g3v1889480.1
– PREDICTED: tRNA pseudouridine synthase 3-like [Glycine max] gi|356574565|ref|XP_003555416.1|
GO terms
4
Lj5g3v1889480.2
– PREDICTED: tRNA pseudouridine synthase 3-like [Glycine max] gi|356574565|ref|XP_003555416.1|
GO terms
4
Lj5g3v1889480.3
– PREDICTED: tRNA pseudouridine synthase 3-like [Glycine max] gi|356574565|ref|XP_003555416.1|
GO terms
4
Lj6g3v1879930.1
– PREDICTED: RNA pseudourine synthase 6, chloroplastic-like [Glycine max] gi|356546416|ref|XP_003541622.1|
GO terms
4
Lj6g3v2193660.1
– PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Glycine max] gi|356525850|ref|XP_003531534.1|
GO terms
4
Lj6g3v2193670.1
– PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Glycine max] gi|356525850|ref|XP_003531534.1|
GO terms
4
LotjaGi1g1v0109500.1
– TRNA pseudouridine synthase A, related protein; TAIR: AT2G30320.1 Pseudouridine synthase family protein; Swiss-Prot: sp|O22928|PUSH_ARATH Putative tRNA pseudouridine synthase; TrEMBL-Plants: tr|K7KAB0|K7KAB0_SOYBN tRNA pseudouridine synthase; Found in the gene: LotjaGi1g1v0109500
GO terms
5
LotjaGi1g1v0110600.1
– TRNA pseudouridine synthase A; TAIR: AT2G30320.1 Pseudouridine synthase family protein; Swiss-Prot: sp|O22928|PUSH_ARATH Putative tRNA pseudouridine synthase; TrEMBL-Plants: tr|K7KAA8|K7KAA8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0110600
GO terms
5
LotjaGi1g1v0335700.1
– Pseudouridine synthase; TAIR: AT5G51140.1 Pseudouridine synthase family protein; Swiss-Prot: sp|Q0E0Y3|PUS7_ORYSJ RNA pseudouridine synthase 7; TrEMBL-Plants: tr|V7AZ29|V7AZ29_PHAVU Pseudouridine synthase; Found in the gene: LotjaGi1g1v0335700
GO terms
4
LotjaGi1g1v0335700.2
– Pseudouridine synthase; TAIR: AT5G51140.1 Pseudouridine synthase family protein; Swiss-Prot: sp|Q0E0Y3|PUS7_ORYSJ RNA pseudouridine synthase 7; TrEMBL-Plants: tr|V7AZ29|V7AZ29_PHAVU Pseudouridine synthase; Found in the gene: LotjaGi1g1v0335700
GO terms
4
LotjaGi1g1v0431800.1
– Pseudouridine synthase; TAIR: AT1G76050.2 Pseudouridine synthase family protein; Swiss-Prot: sp|Q3ECD0|PUS2_ARATH RNA pseudouridine synthase 2, chloroplastic; TrEMBL-Plants: tr|V7ARA7|V7ARA7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0431800
GO terms
4
LotjaGi1g1v0431800.2
– Pseudouridine synthase; TAIR: AT1G76050.2 Pseudouridine synthase family protein; Swiss-Prot: sp|Q3ECD0|PUS2_ARATH RNA pseudouridine synthase 2, chloroplastic; TrEMBL-Plants: tr|V7ARA7|V7ARA7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0431800
GO terms
4
LotjaGi1g1v0779800.1
– TRNA pseudouridine synthase d, putative; TAIR: AT3G04820.1 Pseudouridine synthase family protein; Swiss-Prot: sp|O74343|YH2X_SCHPO Putative pseudouridine synthase C1A4.09; TrEMBL-Plants: tr|A0A0B2RGJ2|A0A0B2RGJ2_GLYSO Multisubstrate pseudouridine synthase 7; Found in the gene: LotjaGi1g1v0779800
GO terms
4
LotjaGi1g1v0779800.2
– TRNA pseudouridine synthase d, putative; TAIR: AT3G04820.1 Pseudouridine synthase family protein; Swiss-Prot: sp|Q08647|PUS7_YEAST Multisubstrate pseudouridine synthase 7; TrEMBL-Plants: tr|I1NC79|I1NC79_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0779800
GO terms
4
LotjaGi2g1v0239300.1
– TRNA pseudouridine synthase B; TAIR: AT5G14460.1 Pseudouridine synthase family protein; Swiss-Prot: sp|A0JUU8|TRUB_ARTS2 tRNA pseudouridine synthase B; TrEMBL-Plants: tr|D7M6J7|D7M6J7_ARALL Putative uncharacterized protein; Found in the gene: LotjaGi2g1v0239300
GO terms
4
LotjaGi2g1v0239300.2
– TRNA pseudouridine synthase B; TAIR: AT5G14460.1 Pseudouridine synthase family protein; Swiss-Prot: sp|Q9RB36|TRUB_FLAJ1 tRNA pseudouridine synthase B; TrEMBL-Plants: tr|A0A072U4X6|A0A072U4X6_MEDTR tRNA pseudouridine synthase B; Found in the gene: LotjaGi2g1v0239300
GO terms
4
LotjaGi2g1v0461400.1
– Pseudouridine synthase family protein; TAIR: AT3G19440.1 Pseudouridine synthase family protein; Swiss-Prot: sp|Q9LT72|PUS4_ARATH RNA pseudouridine synthase 4, mitochondrial; TrEMBL-Plants: tr|A0A0S3T6K0|A0A0S3T6K0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0461400
GO terms
4
LotjaGi4g1v0286200.1
– TRNA pseudouridine synthase A, related protein; TAIR: AT1G20370.1 Pseudouridine synthase family protein; Swiss-Prot: sp|Q6CC39|PUS1_YARLI tRNA pseudouridine synthase 1; TrEMBL-Plants: tr|G7JGU0|G7JGU0_MEDTR tRNA pseudouridine synthase A, related protein; Found in the gene: LotjaGi4g1v0286200
GO terms
5
LotjaGi4g1v0286200.2
– TRNA pseudouridine synthase A, related protein; TAIR: AT1G20370.1 Pseudouridine synthase family protein; Swiss-Prot: sp|Q6CC39|PUS1_YARLI tRNA pseudouridine synthase 1; TrEMBL-Plants: tr|G7JGU0|G7JGU0_MEDTR tRNA pseudouridine synthase A, related protein; Found in the gene: LotjaGi4g1v0286200
GO terms
5
LotjaGi4g1v0314200.1
– TRNA pseudouridine synthase A; TAIR: AT3G06950.1 Pseudouridine synthase family protein; Swiss-Prot: sp|Q6MEE7|TRUA1_PARUW tRNA pseudouridine synthase A 1; TrEMBL-Plants: tr|V7CC41|V7CC41_PHAVU tRNA pseudouridine synthase; Found in the gene: LotjaGi4g1v0314200
GO terms
4
LotjaGi4g1v0439300.1
– TRNA pseudouridine synthase A; TAIR: AT5G35400.1 Pseudouridine synthase family protein; Swiss-Prot: sp|B0SC03|TRUA_LEPBA tRNA pseudouridine synthase A; TrEMBL-Plants: tr|I1KPQ1|I1KPQ1_SOYBN tRNA pseudouridine synthase; Found in the gene: LotjaGi4g1v0439300
GO terms
4
LotjaGi5g1v0001600.1
– TRNA pseudouridine synthase Pus10, putative; TAIR: AT1G20410.1 Pseudouridine synthase family protein; Swiss-Prot: sp|Q3MIT2|PUS10_HUMAN Putative tRNA pseudouridine synthase Pus10; TrEMBL-Plants: tr|A0A151TFB1|A0A151TFB1_CAJCA Putative tRNA pseudouridine synthase Pus10; Found in the gene: LotjaGi5g1v0001600
GO terms
4
LotjaGi5g1v0001600.2
– TRNA pseudouridine synthase Pus10, putative; TAIR: AT1G20410.1 Pseudouridine synthase family protein; Swiss-Prot: sp|Q3MIT2|PUS10_HUMAN Putative tRNA pseudouridine synthase Pus10; TrEMBL-Plants: tr|A0A151TFB1|A0A151TFB1_CAJCA Putative tRNA pseudouridine synthase Pus10; Found in the gene: LotjaGi5g1v0001600
GO terms
4
LotjaGi5g1v0001600.3
– TRNA pseudouridine synthase Pus10, putative; TAIR: AT1G20410.1 Pseudouridine synthase family protein; Swiss-Prot: sp|Q3MIT2|PUS10_HUMAN Putative tRNA pseudouridine synthase Pus10; TrEMBL-Plants: tr|A0A151TFB1|A0A151TFB1_CAJCA Putative tRNA pseudouridine synthase Pus10; Found in the gene: LotjaGi5g1v0001600
GO terms
4
LotjaGi5g1v0039400.1
– Pseudouridine synthase family protein; TAIR: AT1G78910.2 Pseudouridine synthase family protein; Swiss-Prot: sp|Q5XET6|PUS3_ARATH RNA pseudouridine synthase 3, mitochondrial; TrEMBL-Plants: tr|A0A151T0N6|A0A151T0N6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0039400
GO terms
4
LotjaGi5g1v0039400.2
– Pseudouridine synthase family protein; TAIR: AT1G78910.1 Pseudouridine synthase family protein; Swiss-Prot: sp|Q5XET6|PUS3_ARATH RNA pseudouridine synthase 3, mitochondrial; TrEMBL-Plants: tr|K7MNI8|K7MNI8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0039400
GO terms
4
LotjaGi5g1v0039400.3
– Pseudouridine synthase family protein; TAIR: AT1G78910.2 Pseudouridine synthase family protein; Swiss-Prot: sp|Q5XET6|PUS3_ARATH RNA pseudouridine synthase 3, mitochondrial; TrEMBL-Plants: tr|A0A151T0N6|A0A151T0N6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0039400
GO terms
4
LotjaGi5g1v0039400.4
– Pseudouridine synthase family protein; TAIR: AT1G78910.1 Pseudouridine synthase family protein; Swiss-Prot: sp|Q5XET6|PUS3_ARATH RNA pseudouridine synthase 3, mitochondrial; TrEMBL-Plants: tr|K7MNI8|K7MNI8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0039400
GO terms
4
LotjaGi5g1v0229200.1
– Pseudouridine synthase family protein; TAIR: AT1G56345.1 Pseudouridine synthase family protein; Swiss-Prot: sp|Q7XA65|PUS1_ARATH RNA pseudouridine synthase 1; TrEMBL-Plants: tr|A0A072VMN0|A0A072VMN0_MEDTR RNA pseudouridine synthase; Found in the gene: LotjaGi5g1v0229200
GO terms
4
LotjaGi5g1v0229200.2
– Pseudouridine synthase family protein; TAIR: AT1G56345.1 Pseudouridine synthase family protein; Swiss-Prot: sp|Q7XA65|PUS1_ARATH RNA pseudouridine synthase 1; TrEMBL-Plants: tr|A0A072VMN0|A0A072VMN0_MEDTR RNA pseudouridine synthase; Found in the gene: LotjaGi5g1v0229200
GO terms
4
LotjaGi5g1v0270600.1
– Ribosomal large subunit pseudouridine synthase B; TAIR: AT2G39140.1 pseudouridine synthase family protein; Swiss-Prot: sp|P35159|RLUB_BACSU Ribosomal large subunit pseudouridine synthase B; TrEMBL-Plants: tr|A0A151SE04|A0A151SE04_CAJCA Ribosomal large subunit pseudouridine synthase B; Found in the gene: LotjaGi5g1v0270600
GO terms
4
LotjaGi5g1v0276400.1
– Pseudouridine synthase; TAIR: AT3G52260.2 Pseudouridine synthase family protein; Swiss-Prot: sp|Q5M721|PUS5_ARATH RNA pseudouridine synthase 5; TrEMBL-Plants: tr|I1NHE4|I1NHE4_SOYBN Pseudouridine synthase; Found in the gene: LotjaGi5g1v0276400
GO terms
4
LotjaGi5g1v0285000.1
– TRNA pseudouridine synthase; TAIR: AT1G34150.1 Pseudouridine synthase family protein; Swiss-Prot: sp|Q3SX07|PUS3_BOVIN tRNA pseudouridine(38/39) synthase; TrEMBL-Plants: tr|K7N408|K7N408_SOYBN tRNA pseudouridine synthase; Found in the gene: LotjaGi5g1v0285000
GO terms
4
LotjaGi6g1v0296200.1
– Pseudouridine synthase family protein; TAIR: AT4G21770.1 Pseudouridine synthase family protein; Swiss-Prot: sp|Q9SVS0|PUS6_ARATH RNA pseudouridine synthase 6, chloroplastic; TrEMBL-Plants: tr|I1M124|I1M124_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0296200
GO terms
4
LotjaGi6g1v0296200.2
– Pseudouridine synthase family protein; TAIR: AT4G21770.1 Pseudouridine synthase family protein; Swiss-Prot: sp|Q9SVS0|PUS6_ARATH RNA pseudouridine synthase 6, chloroplastic; TrEMBL-Plants: tr|I1M124|I1M124_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0296200
GO terms
4
LotjaGi6g1v0296200.3
– Pseudouridine synthase family protein; TAIR: AT4G21770.1 Pseudouridine synthase family protein; Swiss-Prot: sp|Q9SVS0|PUS6_ARATH RNA pseudouridine synthase 6, chloroplastic; TrEMBL-Plants: tr|I1M124|I1M124_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0296200
GO terms
4
LotjaGi6g1v0350500.1
– TRNA pseudouridine synthase B; TAIR: AT3G57150.1 homologue of NAP57; Swiss-Prot: sp|Q9LD90|CBF5_ARATH H/ACA ribonucleoprotein complex subunit 4; TrEMBL-Plants: tr|V7BUX8|V7BUX8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0350500
GO terms
4
LotjaGi6g1v0364100_LC.1
– TRNA pseudouridine synthase A; TAIR: AT1G09800.1 Pseudouridine synthase family protein; Swiss-Prot: sp|A7IKI9|TRUA_XANP2 tRNA pseudouridine synthase A; TrEMBL-Plants: tr|K7LVD0|K7LVD0_SOYBN tRNA pseudouridine synthase; Found in the gene: LotjaGi6g1v0364100_LC
GO terms
4

Co-occuring GO terms 1

A list of co-occurring GO terms within the L. japonicus gene space:

GO term Namespace Name Observations Saturation (%)
GO:0009982
Molecular function Pseudouridine synthase activity 1 1.54