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cd02869

Source: CDD

Description

PseudoU_synth_RluCD_like

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0001522
Biological process Pseudouridine synthesis The intramolecular conversion of uridine to pseudouridine within an RNA molecule. This posttranscriptional base modification occurs in tRNA, rRNA, and snRNAs.
Subterm of
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0009451
Biological process RNA modification The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically.
Subterm of
GO:0009982
Molecular function Pseudouridine synthase activity Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5.
Subterm of

Associated Lotus transcripts 21

Transcript Name Description Predicted domains Domain count
Lj0g3v0316659.1
– PREDICTED: RNA pseudourine synthase 3, mitochondrial-like isoform X1 [Cicer arietinum] gi|502172693|ref|XP_004515176.1|
Domains
13
Lj0g3v0316659.2
– PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Glycine max] gi|356562211|ref|XP_003549365.1|
Domains
7
Lj0g3v0316659.3
– PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Glycine max] gi|356562211|ref|XP_003549365.1|
Domains
7
Lj1g3v0037710.1
– PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Glycine max] gi|356495831|ref|XP_003516775.1|
Domains
7
Lj1g3v0047810.1
– PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Glycine max] gi|356495831|ref|XP_003516775.1|
Domains
7
Lj1g3v2251580.1
– PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Cicer arietinum] gi|502131232|ref|XP_004500918.1|
Domains
16
Lj5g3v1839410.1
– PREDICTED: RNA pseudourine synthase 5-like [Glycine max] gi|356576201|ref|XP_003556222.1|
Domains
9
Lj5g3v1839410.3
– PREDICTED: RNA pseudourine synthase 5-like [Cicer arietinum] gi|502118549|ref|XP_004496322.1|
Domains
9
LotjaGi1g1v0431800.1
– Pseudouridine synthase; TAIR: AT1G76050.2 Pseudouridine synthase family protein; Swiss-Prot: sp|Q3ECD0|PUS2_ARATH RNA pseudouridine synthase 2, chloroplastic; TrEMBL-Plants: tr|V7ARA7|V7ARA7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0431800
Domains
19
LotjaGi1g1v0431800.2
– Pseudouridine synthase; TAIR: AT1G76050.2 Pseudouridine synthase family protein; Swiss-Prot: sp|Q3ECD0|PUS2_ARATH RNA pseudouridine synthase 2, chloroplastic; TrEMBL-Plants: tr|V7ARA7|V7ARA7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0431800
Domains
19
LotjaGi2g1v0461400.1
– Pseudouridine synthase family protein; TAIR: AT3G19440.1 Pseudouridine synthase family protein; Swiss-Prot: sp|Q9LT72|PUS4_ARATH RNA pseudouridine synthase 4, mitochondrial; TrEMBL-Plants: tr|A0A0S3T6K0|A0A0S3T6K0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0461400
Domains
7
LotjaGi5g1v0039400.1
– Pseudouridine synthase family protein; TAIR: AT1G78910.2 Pseudouridine synthase family protein; Swiss-Prot: sp|Q5XET6|PUS3_ARATH RNA pseudouridine synthase 3, mitochondrial; TrEMBL-Plants: tr|A0A151T0N6|A0A151T0N6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0039400
Domains
8
LotjaGi5g1v0039400.2
– Pseudouridine synthase family protein; TAIR: AT1G78910.1 Pseudouridine synthase family protein; Swiss-Prot: sp|Q5XET6|PUS3_ARATH RNA pseudouridine synthase 3, mitochondrial; TrEMBL-Plants: tr|K7MNI8|K7MNI8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0039400
Domains
8
LotjaGi5g1v0039400.3
– Pseudouridine synthase family protein; TAIR: AT1G78910.2 Pseudouridine synthase family protein; Swiss-Prot: sp|Q5XET6|PUS3_ARATH RNA pseudouridine synthase 3, mitochondrial; TrEMBL-Plants: tr|A0A151T0N6|A0A151T0N6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0039400
Domains
8
LotjaGi5g1v0039400.4
– Pseudouridine synthase family protein; TAIR: AT1G78910.1 Pseudouridine synthase family protein; Swiss-Prot: sp|Q5XET6|PUS3_ARATH RNA pseudouridine synthase 3, mitochondrial; TrEMBL-Plants: tr|K7MNI8|K7MNI8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0039400
Domains
8
LotjaGi5g1v0229200.1
– Pseudouridine synthase family protein; TAIR: AT1G56345.1 Pseudouridine synthase family protein; Swiss-Prot: sp|Q7XA65|PUS1_ARATH RNA pseudouridine synthase 1; TrEMBL-Plants: tr|A0A072VMN0|A0A072VMN0_MEDTR RNA pseudouridine synthase; Found in the gene: LotjaGi5g1v0229200
Domains
9
LotjaGi5g1v0229200.2
– Pseudouridine synthase family protein; TAIR: AT1G56345.1 Pseudouridine synthase family protein; Swiss-Prot: sp|Q7XA65|PUS1_ARATH RNA pseudouridine synthase 1; TrEMBL-Plants: tr|A0A072VMN0|A0A072VMN0_MEDTR RNA pseudouridine synthase; Found in the gene: LotjaGi5g1v0229200
Domains
9
LotjaGi5g1v0276400.1
– Pseudouridine synthase; TAIR: AT3G52260.2 Pseudouridine synthase family protein; Swiss-Prot: sp|Q5M721|PUS5_ARATH RNA pseudouridine synthase 5; TrEMBL-Plants: tr|I1NHE4|I1NHE4_SOYBN Pseudouridine synthase; Found in the gene: LotjaGi5g1v0276400
Domains
12
LotjaGi6g1v0296200.1
– Pseudouridine synthase family protein; TAIR: AT4G21770.1 Pseudouridine synthase family protein; Swiss-Prot: sp|Q9SVS0|PUS6_ARATH RNA pseudouridine synthase 6, chloroplastic; TrEMBL-Plants: tr|I1M124|I1M124_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0296200
Domains
15
LotjaGi6g1v0296200.2
– Pseudouridine synthase family protein; TAIR: AT4G21770.1 Pseudouridine synthase family protein; Swiss-Prot: sp|Q9SVS0|PUS6_ARATH RNA pseudouridine synthase 6, chloroplastic; TrEMBL-Plants: tr|I1M124|I1M124_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0296200
Domains
15
LotjaGi6g1v0296200.3
– Pseudouridine synthase family protein; TAIR: AT4G21770.1 Pseudouridine synthase family protein; Swiss-Prot: sp|Q9SVS0|PUS6_ARATH RNA pseudouridine synthase 6, chloroplastic; TrEMBL-Plants: tr|I1M124|I1M124_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0296200
Domains
15

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 4.76