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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0041800 |
| Transcript ID | LotjaGi5g1v0041800.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein REVERSION-TO-ETHYLENE SENSITIVITY1; TAIR: AT2G26070.1 protein REVERSION-TO-ETHYLENE SENSITIVITY-like protein (DUF778); Swiss-Prot: sp|F4ITL6|RTE1_ARATH Protein REVERSION-TO-ETHYLENE SENSITIVITY1; TrEMBL-Plants: tr|I3S7V1|I3S7V1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0041800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:6983634..6987017) extracted from Lotus japonicus Gifu genome v1.2.
AAAACATGGCTAGGGACCCACCATGAAAGAGAATCATGAAAGTCGGCAAAGGGTTCATGCACCTTTCCCACTTCCCATCC TTTGCTTCTGTTTCAAAACAATCAGAGATTTCCCCCAATGAAGCAATAATTAAAAGAATGAAATAATCTATGACATTAAA TATTTATTCTTTAGAGGCTAGATGTTGTGGAATTTGTGTAGGACTTTTTTATGATTTTTATTTTATCTAAGTGGTTTTAA ATCTTACAAGTCTTGGATATTTTAGCCTCTGAGCAATGACCAAAAACAACAACAGCTTCTTCTTTTCTGCTTCTTGGCCA TCATCCTCTTCAATCTTGAGATCTTATTCAGTGTGTGCTGTGCTTGTGTCATCTTTTTTTTCAGGTAAGGACTCAGGATA ACTCAGTTATGTTAAGACAATGGTTTCTTTGGTTTTTCCTACATGATGTTATCCACATTGATGAAGTTTTACATATGCTA TTTGATATCTCTAATGTGTAAGTACAAGTTTGAAAATCCTTCTACAATTGATTCTAAAATCATAATCAATTATGAGGAGA AGCTTATGTGAGTATCTTCTGGTTTTCAGAATAGATTGAGAAAGGAAAAGCTAATCCAAATATGCTATAAGACATCTGGG GTATTCATCTGATTCCCTTTCTATTCAAAACAAAATGGGGAACATAGAACACCCCCTTTAACTACAAGTATAATTTTTTC TTCTGTGGCTCATTCTTCTTGTATTTTGTTAGGGACTGGAGTTAATTGATTGCATAGTTAAAGAACTTGATTCATTACCA TATCAAAAGGCTTTTGTAACCATGTAGCCAACTTATGGTTTAGACTTTATTTGTCATGAATCATGTATACTTGAGTGGAT ATTCTCTCTTTGGTATTCTCTATTGATGTTGTAACTTGTAACTGGCTGTGCTGAAATTGTGATTTGAAATTGGACTTAGT GATGTTTTAGGTTTGTCAATTTCATTTTGGGTGGGAGGGGAACTATCAGTCAATTAAAATTGTTGTGTTGATTGGGTAGT TGAATATAAACCTTATCATTTTGAATAAGGAATAACATTCTCACTTGATCTTTACTGTGAACAGAGTTGGGATGTTTGAG GGAGTAGTTTGATATGGTGATGCATCTACTCAAAAAATTGAGCAGAGCTATATGTTATGCTGTGGACTTCTACTATGGAG TTAAATTCAAGCTATGACATTGAGCATTCGCATTCTACACAAAGAATACAGCATGAGCTGTGGCCACTAGATCCCATCGA TCCGAAAAAGGCAAAGTTTCCATGTTGTTTGGTTTGGAATCCGCTTCCCGTTGTGTCGTGGTTGGCACCCTTCATTGGTC ATATTGGCATTTGCAAGGAGGATGGAGTTGTTTTGGATTTTTCAGGATCATATATTTTGAGTGTGGATGATTTTGCATTT GGTCCAGTGGCAAGGTACCTGCAACTCGACCGTAGTCAGGTGATGTTTCTCAAGTTTGCTGTCTCTGTCTCTTGTTTCAC TTTATCTGTTCAAATTGTTCACATTCATATATATGTGCATGTTCTGTGATACAGTGTTGTAACTAATTCAACTTTTCTTT TTGGCTGATGATGGGATTCTGGGGAACTAAAGGACATTTATGGTCATTGTAGTTATATGTGAAACTGTTGAAGCCAAACA TTGATGTATTAGGAAAACACCAACATATTTGACTGTAGTATTGATAATCATGTCATTGCTGGAAATGGGTTGCATTGGCA GCGTAGAGGGCTCTGTGAAATCAAAATCTACAAGTTATTCAAATGGGAATAACTTGTAGGTTTACACTTATATTTGAAAT CTCCATTTCCGAATACCTATAGATATCACAAGATGCTAATTTGAATTGACACATTAAGTTTGCAATTGATTTTGATTACT GGTGCTTGATTCCTAATTTTAAACCTTCATGGTGCTTATTGTTTTGGTTTTTAATCCCAGCTGCATGATACTGGGGCAAA CATGCTCAAAATTGTAAGATGTGTTTGTTATGCTCATAAGCTGAGATTATTGCCACTCAGTTTAAGCCATTGTTTGATGT TATGATTTTACCTTGCTTATTGTAAATGTAGTTTGTTTGTACTTTATACTTGTGTTGGAATATTTTTCAACTGGGGGGAG GGACAAACATAGGCGTCAAGGTTTTAATCTCAATGGATCTTGGCACCTGTTCTTCCATAGAATCACCTGGACCTGTATCA CACCTATGTATCCCCAATCAGTGAGAGTTACGAAATCGTAACTTATACTCCGGAAATAGACTTAGATGTTTACAATTTGG GTTTACAAATCTCTCCCCTTTGATCTATCTGTTAAAATTTTGGTTGGAGTCAAGTTTAATTGTTTGCGAGTGTTAACTCT ATTTGACATTTTGTGGAACTTGAAATGTTGCAGTGTTGCTTCCCTCCTAACCTATCAGCACACACATGCAAGCATGGCTA CCAGCATTCTGAGTATGGCACTGCAATCACATGGGATGATGCATTGCAGTCGAGCTCGCGGTATTTTGAGAACAAAACTC ACAACCTTTTCACCTGCAACTGCCACTCATTTGTTGCTAACTGTCTGAACCGGCTCTGTTATGGAGGATCAATGAGCTGG AACATGGTAAGTGTAGGAGCTCTAATACTATTCAAGGGGAGCTGGGTTGACTTCAGGTCTGTTATAAGGGCTTTCTTGCC TTTTGTTGTGGTTGTGTGCATTGGAGTTCTCATGGTTGGGTGGCCCTTCTTACTTGGGTTGTTATCCTTCTCTCTACTCT TGATGGGGTGGTTTCTAGTGGGTACTTATCTTGTTAAAAACTTACTAGAGTGCTAGATGCTCTTTTGAGTTGAAACATGG CATGCTTTTTCTTCACCAAATAATGTATTATTAGTTTTGTTTTGCTTCAACTTAAGTAGCATGTTTGGATCAACTTCTAT TTCCTTTGAATCAATTGTGAAACCTAAAAGCAATTGATTCTGACTTTAGAATCAATTGTTGAAAGATTTTCAAACATGCA TGAAATAGCTTTTTCAGTTTCCCGAAACCTCTCAAGTGTATTTGGTGCTCATTACAATATGGTGTTGGTGAAAGTGATTT TCAACCTTAATCCCATGGTGAAGGGGGTTATAATAAAATCATGATATAAACTTAATTTTAAGTTAATCTTCGGAAGTTGA ATAAATAAATTATTGGCTTAAATACTCTGGAGGTCCCTGAAATTGTCTGCCGTACGAAAATAAGTCCTTGAATTTTTTTT TCTCGATTTCGAATCCCTAGAAATTGTTTTTTAATCAGAATAAGTCCCTACTCGTGTTTCCAGCCTATGTGGCACAATTT TTGCTGAGTCATTTATTCTACGTG
CDS sequence (LotjaGi5g1v0041800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTGTGGACTTCTACTATGGAGTTAAATTCAAGCTATGACATTGAGCATTCGCATTCTACACAAAGAATACAGCATGA GCTGTGGCCACTAGATCCCATCGATCCGAAAAAGGCAAAGTTTCCATGTTGTTTGGTTTGGAATCCGCTTCCCGTTGTGT CGTGGTTGGCACCCTTCATTGGTCATATTGGCATTTGCAAGGAGGATGGAGTTGTTTTGGATTTTTCAGGATCATATATT TTGAGTGTGGATGATTTTGCATTTGGTCCAGTGGCAAGGTACCTGCAACTCGACCGTAGTCAGTGTTGCTTCCCTCCTAA CCTATCAGCACACACATGCAAGCATGGCTACCAGCATTCTGAGTATGGCACTGCAATCACATGGGATGATGCATTGCAGT CGAGCTCGCGGTATTTTGAGAACAAAACTCACAACCTTTTCACCTGCAACTGCCACTCATTTGTTGCTAACTGTCTGAAC CGGCTCTGTTATGGAGGATCAATGAGCTGGAACATGGTAAGTGTAGGAGCTCTAATACTATTCAAGGGGAGCTGGGTTGA CTTCAGGTCTGTTATAAGGGCTTTCTTGCCTTTTGTTGTGGTTGTGTGCATTGGAGTTCTCATGGTTGGGTGGCCCTTCT TACTTGGGTTGTTATCCTTCTCTCTACTCTTGATGGGGTGGTTTCTAGTGGGTACTTATCTTGTTAAAAACTTACTAGAG TGCTAG
Protein sequence (LotjaGi5g1v0041800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLWTSTMELNSSYDIEHSHSTQRIQHELWPLDPIDPKKAKFPCCLVWNPLPVVSWLAPFIGHIGICKEDGVVLDFSGSYI LSVDDFAFGPVARYLQLDRSQCCFPPNLSAHTCKHGYQHSEYGTAITWDDALQSSSRYFENKTHNLFTCNCHSFVANCLN RLCYGGSMSWNMVSVGALILFKGSWVDFRSVIRAFLPFVVVVCIGVLMVGWPFLLGLLSFSLLLMGWFLVGTYLVKNLLE C
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 190 | 190 | - | – | |
| PANTHER | 5 | 240 | 236 | 3.2E-113 | ||
| PANTHER | 5 | 240 | 236 | 3.2E-113 | – | |
| Pfam | 50 | 99 | 50 | 3.3E-20 | ||
| Pfam | 100 | 185 | 86 | 1.9E-22 | ||
| Phobius | 191 | 211 | 21 | - | – | |
| TMHMM | 191 | 213 | 23 | - | – | |
| Phobius | 212 | 216 | 5 | - | – | |
| Phobius | 217 | 235 | 19 | - | – | |
| TMHMM | 217 | 239 | 23 | - | – | |
| Phobius | 236 | 241 | 6 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0041800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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