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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0077200 |
| Transcript ID | LotjaGi5g1v0077200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger family protein; TAIR: AT5G03150.1 C2H2-like zinc finger protein; Swiss-Prot: sp|Q700D2|IDD10_ARATH Zinc finger protein JACKDAW; TrEMBL-Plants: tr|I1JPL1|I1JPL1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0077200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:12624507..12627083) extracted from Lotus japonicus Gifu genome v1.2.
AGAGAGAGAAACGAGGTCATGAAATATTATAGCTATCCTATTCCTACATGTTTATATAGTAGGCTTTTGGTTTTATCTCC TCAGAAATGAAACCAAACAAACAAGAAACCGGATCACAAGTTGGAAGCTCTTGCATTAGTATTATATAGTTTTTCTCTTT TCAGTCTCTTTAAATATTTTTGGTTCGACTCAACTCAAGTTTCGTTTATGGCTTTTTCTTGTCTTTTGGCAGAACGATAC GCATAGCAAAAGAATTTGGGGTACCCTCCAAAAGAATTTATGTTCGTTTCTTGGCTTTTGCTACTCCAAAACCATTGTTT TCTTCCTTGTACTCTCTGAAAACCTTTCAAACTTTCCTGTTTTCTTCTGCAACCTGCCTTTTCTATAGCCACCACTACAC CTCCCTTTGCTATATAGCTTTCTCAAACATGCAAATGATCCCAGGTGACCCCTTTTCATTATCCACTCCACTCGGAGGGT TTAGCACTCAAGAGCAAAACACAAACCCTAACCCTAAACCTAATGCTCCGACCACCACCAAGAAGAAGAGAAACCTGCCC GGAACACCAGGTTAGACATCATCATTATTGACAAAATTAAAACTTTAATCTTTTCTACTACTATGAGCTCCCTTTAGATA CAAAAATAAATATAAAATAGTTATCAGAGTTTTTATGCTAGAAAAAGTACTAAATAAGCTTCGATAATTGCTTTTTAGTC TGCATCTGAACGAACTGATTTTTCTTCCTCTAATGAACTTTGCATTGTGATTTCTTGATTGCAGATCCAGATGCCGAGGT CATTGCTCTCTCCCCAAAGACCCTCATGGCGACGAACCGCTTCGTCTGTGAAATATGCAACAAAGGCTTCCAGAGAGACC AGAATCTCCAGCTCCACAGAAGAGGCCACAACCTCCCATGGAAGCTCCGGCAGAGATCCAACAAGGAGGTTCGTAAAAAG GTCTACATCTGCCCGGAGAAGACCTGCGTCCACCACGACGCGTCGCGAGCACTCGGCGACCTCACCGGCATCAAGAAGCA CTTCAGCAGAAAGCACGGTGAGAAGAAGTGGAAGTGTGAGAAGTGCTCCAAGAAATACGCAGTCCAATCAGATTGGAAAG CTCACACCAAAACATGCGGCACCAGGGAGTACAAGTGTGACTGTGGCACCCTCTTCTCCAGGCACGTAATTAATACACAC AAACACAATCTCCTTAGTTTTCAGCAAATCTTTGCTTTCTTCTATTGCAAAAGAATAAAAATTAAATGCTTCTTTACATT TCATATTTATGTAACATGTCCGAGGTTTTCTCATTCGTTGTTAGGTTTGTGAATTTAATGCTGCTTCCTTAATTATTAAT GGCGATTGAATTTTTTTGCTTTTTGTTTGGTTTTCATTGAATGATGAACAGAAAGGATAGCTTCATAACACATAGAGCTT TCTGTGATGCGTTGGCGGAAGAGAGTGCTAGGCTAACCTCAGTTACTTCTTCTACAAATCTGAATTTCAAGGATGAAGAT TGTATTTCTTTGATTCCAAAAAATTTTGATGGCAGCATTCCGCAGTTTGGCCCACACGGGTTTCGCCTGGATTTCAACCA CAACAATAACTCTTTGATGGGTGCTGGTGACCAACACCAACATATTAGGCCGAGTTTGTCGCTGTGGTTGAACCAGGCAA ACCCTCCTCCTCATCATCCTCACGATGTGGGAGGGATTTTCGTGTCGTCGTCATTGGGTTTGCCTGAGATTGTGCAAATG CAACAACCACAGGTTCACAATAATGGCATGATTGGGTCTTCATCAATGTTGCCTAATTTTGTTCCTGGTTCGAATTCAAA CACTGCAAGCCTTTCACTTTCTGAGGGTCAAAATAAGCAATCAAATTCATCAAAACCTGCTTCTCCTATGTCAGCAACTG CCCTTCTTCAGAAGGCAGCTCAAATGGGATCCACTAGAAGCTCCAACAACCCTTCCATTTTCAGTGGTAGTTTTGGGGTG ATGACCTCATCACCTAACTCCTCTCAAACTACCACTACTCTCAACAATAATAGCCATAATGGTAATGAGATTAACCAGGT TTTTCAGGCCATGAAGCAACCACAGGATTTTACTTCAAATGGAGGTGAAGCCATAATGGGGAATAGTGCCAGTTTCAGCT CAATGGCGCATTCATCAAACGCTTATGATCAACTTGTGATGCAAAACAATGGGAAAATGAAGCTCCACCTTTCAAACGCT GCGGATCATAATTTGACAAGAGATTTTCTTGGCGTGAGTGGAGGAGGAGCTGGTCCTCAATTCCTACCTCAAGAGCTAGC AAAGTTTTTGCATCCATAGGTTCAACAATGGGGTTGAATCAATTCACAGTCAATCAATCAGTGAATTTTTGTTTTTCTGA GAAAAGTTCGTTCATGTCAAGTGTTTGTAAGATATAAATTTGAAATGGAGGCTTAATGGGATGTTCAATTGGCTCTTGTT GTTGCTTTTAGATCTTCTCATGTAATGTTAAAAGATTTATGTTTTCTTCATAAATATTTCCACTTATTTAATATTGAATA AACACAAAATTTTACTC
CDS sequence (LotjaGi5g1v0077200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAAATGATCCCAGGTGACCCCTTTTCATTATCCACTCCACTCGGAGGGTTTAGCACTCAAGAGCAAAACACAAACCC TAACCCTAAACCTAATGCTCCGACCACCACCAAGAAGAAGAGAAACCTGCCCGGAACACCAGATCCAGATGCCGAGGTCA TTGCTCTCTCCCCAAAGACCCTCATGGCGACGAACCGCTTCGTCTGTGAAATATGCAACAAAGGCTTCCAGAGAGACCAG AATCTCCAGCTCCACAGAAGAGGCCACAACCTCCCATGGAAGCTCCGGCAGAGATCCAACAAGGAGGTTCGTAAAAAGGT CTACATCTGCCCGGAGAAGACCTGCGTCCACCACGACGCGTCGCGAGCACTCGGCGACCTCACCGGCATCAAGAAGCACT TCAGCAGAAAGCACGGTGAGAAGAAGTGGAAGTGTGAGAAGTGCTCCAAGAAATACGCAGTCCAATCAGATTGGAAAGCT CACACCAAAACATGCGGCACCAGGGAGTACAAGTGTGACTGTGGCACCCTCTTCTCCAGAAAGGATAGCTTCATAACACA TAGAGCTTTCTGTGATGCGTTGGCGGAAGAGAGTGCTAGGCTAACCTCAGTTACTTCTTCTACAAATCTGAATTTCAAGG ATGAAGATTGTATTTCTTTGATTCCAAAAAATTTTGATGGCAGCATTCCGCAGTTTGGCCCACACGGGTTTCGCCTGGAT TTCAACCACAACAATAACTCTTTGATGGGTGCTGGTGACCAACACCAACATATTAGGCCGAGTTTGTCGCTGTGGTTGAA CCAGGCAAACCCTCCTCCTCATCATCCTCACGATGTGGGAGGGATTTTCGTGTCGTCGTCATTGGGTTTGCCTGAGATTG TGCAAATGCAACAACCACAGGTTCACAATAATGGCATGATTGGGTCTTCATCAATGTTGCCTAATTTTGTTCCTGGTTCG AATTCAAACACTGCAAGCCTTTCACTTTCTGAGGGTCAAAATAAGCAATCAAATTCATCAAAACCTGCTTCTCCTATGTC AGCAACTGCCCTTCTTCAGAAGGCAGCTCAAATGGGATCCACTAGAAGCTCCAACAACCCTTCCATTTTCAGTGGTAGTT TTGGGGTGATGACCTCATCACCTAACTCCTCTCAAACTACCACTACTCTCAACAATAATAGCCATAATGGTAATGAGATT AACCAGGTTTTTCAGGCCATGAAGCAACCACAGGATTTTACTTCAAATGGAGGTGAAGCCATAATGGGGAATAGTGCCAG TTTCAGCTCAATGGCGCATTCATCAAACGCTTATGATCAACTTGTGATGCAAAACAATGGGAAAATGAAGCTCCACCTTT CAAACGCTGCGGATCATAATTTGACAAGAGATTTTCTTGGCGTGAGTGGAGGAGGAGCTGGTCCTCAATTCCTACCTCAA GAGCTAGCAAAGTTTTTGCATCCATAG
Protein sequence (LotjaGi5g1v0077200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQMIPGDPFSLSTPLGGFSTQEQNTNPNPKPNAPTTTKKKRNLPGTPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQ NLQLHRRGHNLPWKLRQRSNKEVRKKVYICPEKTCVHHDASRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKA HTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARLTSVTSSTNLNFKDEDCISLIPKNFDGSIPQFGPHGFRLD FNHNNNSLMGAGDQHQHIRPSLSLWLNQANPPPHHPHDVGGIFVSSSLGLPEIVQMQQPQVHNNGMIGSSSMLPNFVPGS NSNTASLSLSEGQNKQSNSSKPASPMSATALLQKAAQMGSTRSSNNPSIFSGSFGVMTSSPNSSQTTTTLNNNSHNGNEI NQVFQAMKQPQDFTSNGGEAIMGNSASFSSMAHSSNAYDQLVMQNNGKMKLHLSNAADHNLTRDFLGVSGGGAGPQFLPQ ELAKFLHP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 50 | 50 | - | – | |
| MobiDBLite | 13 | 42 | 30 | - | – | |
| PANTHER | 19 | 486 | 468 | 1.9E-186 | – | |
| PANTHER | 19 | 486 | 468 | 1.9E-186 | ||
| Gene3D | 63 | 90 | 28 | 1.3E-5 | – | |
| SUPERFAMILY | 66 | 163 | 98 | 2.48E-7 | ||
| Pfam | 67 | 89 | 23 | 0.0048 | ||
| SMART | 67 | 89 | 23 | 0.017 | ||
| ProSiteProfiles | 67 | 89 | 23 | 10.949 | ||
| ProSitePatterns | 69 | 89 | 21 | - | ||
| Gene3D | 100 | 191 | 92 | 2.5E-7 | – | |
| SMART | 108 | 138 | 31 | 120.0 | ||
| SMART | 143 | 163 | 21 | 130.0 | ||
| MobiDBLite | 306 | 348 | 43 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. |
Expression pattern of LotjaGi5g1v0077200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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