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Zinc finger, C2H2 type
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | Zinc finger family protein; TAIR: AT1G34790.1 C2H2 and C2HC zinc fingers superfamily protein; Swiss-Prot: sp|Q8VWG3|TT1_ARATH Protein TRANSPARENT TESTA 1; TrEMBL-Plants: tr|A0A151TZS4|A0A151TZS4_CAJCA Protein TRANSPARENT TESTA 1; Found in the gene: LotjaGi1g1v0143800 | 14 | ||
| – | Zinc finger protein; TAIR: AT2G02070.1 indeterminate(ID)-domain 5; Swiss-Prot: sp|Q8GYC1|IDD4_ARATH Protein indeterminate-domain 4, chloroplastic; TrEMBL-Plants: tr|A9T4T1|A9T4T1_PHYPA Predicted protein; Found in the gene: LotjaGi1g1v0767200_LC | 12 | ||
| – | Zinc finger family protein; TAIR: AT1G13290.1 C2H2-like zinc finger protein; Swiss-Prot: sp|Q9FX68|ZWIP6_ARATH Zinc finger protein WIP6; TrEMBL-Plants: tr|V7C7J4|V7C7J4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0280700 | 11 | ||
| – | Zinc finger family protein; TAIR: AT3G60580.1 C2H2-like zinc finger protein; Swiss-Prot: sp|Q9M202|ZAT9_ARATH Zinc finger protein ZAT9; TrEMBL-Plants: tr|I3SKS1|I3SKS1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0423500 | 13 | ||
| – | Zinc finger protein, putative; TAIR: AT1G72050.2 transcription factor IIIA; Swiss-Prot: sp|Q84MZ4|TF3A_ARATH Transcription factor IIIA; TrEMBL-Plants: tr|A0A0B2RV66|A0A0B2RV66_GLYSO Transcription factor IIIA; Found in the gene: LotjaGi3g1v0109000 | 11 | ||
| – | Zinc finger protein; TAIR: AT5G66730.1 C2H2-like zinc finger protein; Swiss-Prot: sp|Q9LVQ7|IDD1_ARATH Protein indeterminate-domain 1; TrEMBL-Plants: tr|A0A0S3T4U7|A0A0S3T4U7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0115600 | 11 | ||
| – | Zinc finger family protein; TAIR: AT4G06634.2 zinc finger (C2H2 type) family protein; Swiss-Prot: sp|Q2V3L3|Y4634_ARATH Uncharacterized zinc finger protein At4g06634; TrEMBL-Plants: tr|I3T984|I3T984_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0340800 | 18 | ||
| – | Zinc finger family protein; TAIR: AT2G01940.1 C2H2-like zinc finger protein; Swiss-Prot: sp|F4IPE3|IDD15_ARATH Protein SHOOT GRAVITROPISM 5; TrEMBL-Plants: tr|I3SCM2|I3SCM2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0354100 | 14 | ||
| – | Zinc finger protein; TAIR: AT1G55110.1 indeterminate(ID)-domain 7; Swiss-Prot: sp|Q8H1F5|IDD7_ARATH Protein indeterminate-domain 7; TrEMBL-Plants: tr|A0A1J7GRR5|A0A1J7GRR5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0043100 | 11 | ||
| – | Zinc finger family protein; TAIR: AT5G03150.1 C2H2-like zinc finger protein; Swiss-Prot: sp|Q700D2|IDD10_ARATH Zinc finger protein JACKDAW; TrEMBL-Plants: tr|I1JPL1|I1JPL1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0077200 | 12 | ||
| – | Zinc finger (AN1-like) family protein; TAIR: AT2G41835.1 zinc finger (C2H2 type, AN1-like) family protein; Swiss-Prot: sp|Q0D5B9|SAP16_ORYSJ Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16; TrEMBL-Plants: tr|I1JG86|I1JG86_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0139400 | 18 | ||
| – | Zinc finger protein; TAIR: AT3G50700.1 indeterminate(ID)-domain 2; Swiss-Prot: sp|Q9SCQ6|IDD2_ARATH Protein indeterminate-domain 2; TrEMBL-Plants: tr|A0A0L9TYR6|A0A0L9TYR6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0222000 | 11 | ||
| – | Zinc finger protein; TAIR: AT2G02070.1 indeterminate(ID)-domain 5; Swiss-Prot: sp|Q8GYC1|IDD4_ARATH Protein indeterminate-domain 4, chloroplastic; TrEMBL-Plants: tr|A0A103Y7K5|A0A103Y7K5_CYNCS Actin-binding FH2; Found in the gene: LotjaGi5g1v0252400 | 12 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| SSF57667 | SUPERFAMILY | 1 | 7.69 |